Wall clock time and date at job start Tue Mar 31 2020 14:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47210 * 2 1 4 4 C 1.53004 * 109.47402 * 239.99912 * 2 1 3 5 5 C 1.50707 * 109.46724 * 59.99656 * 4 2 1 6 6 H 1.08001 * 119.99756 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99648 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00025 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99560 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47243 * 60.00285 * 9 7 5 11 11 H 1.48505 * 109.46698 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47435 * 299.99790 * 9 7 5 13 13 C 1.53004 * 109.47366 * 119.99923 * 2 1 3 14 14 N 1.46502 * 109.47015 * 300.00026 * 13 2 1 15 15 S 1.65596 * 119.99857 * 164.99725 * 14 13 2 16 16 O 1.42105 * 104.27813 * 308.93179 * 15 14 13 17 17 O 1.42099 * 104.27785 * 181.07232 * 15 14 13 18 18 C 1.81399 * 104.44900 * 64.99983 * 15 14 13 19 19 H 1.08997 * 112.85064 * 53.80467 * 18 15 14 20 20 C 1.53789 * 113.61368 * 184.99862 * 18 15 14 21 21 C 1.53778 * 87.07796 * 139.98282 * 20 18 15 22 22 H 1.09001 * 113.61738 * 89.20102 * 21 20 18 23 23 C 1.50706 * 113.61408 * 220.01916 * 21 20 18 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 21 20 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 21 20 26 26 C 1.53781 * 87.08523 * 334.56531 * 21 20 18 27 27 H 1.09001 * 109.47220 * 299.99840 * 1 2 3 28 28 H 1.08996 * 109.47189 * 60.00345 * 1 2 3 29 29 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47092 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46762 * 299.99916 * 3 2 1 32 32 H 1.09001 * 109.46898 * 59.99963 * 3 2 1 33 33 H 1.08997 * 109.47700 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47155 * 300.00257 * 4 2 1 35 35 H 0.97001 * 119.99833 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47187 * 179.97438 * 13 2 1 37 37 H 1.09000 * 109.46783 * 59.99993 * 13 2 1 38 38 H 0.96996 * 119.99910 * 344.99896 * 14 13 2 39 39 H 1.09001 * 113.61463 * 25.43342 * 20 18 15 40 40 H 1.08997 * 113.68843 * 254.54352 * 20 18 15 41 41 H 0.96700 * 117.00196 * 179.97438 * 25 23 21 42 42 H 1.09005 * 113.61410 * 139.97833 * 26 21 20 43 43 H 1.08991 * 113.61824 * 270.88770 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8674 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6256 -1.5520 -3.8526 9 14 1.2481 0.3988 -5.2571 10 1 1.7441 1.7984 -5.2573 11 1 1.7420 -0.3021 -6.4697 12 1 -0.2369 0.3998 -5.2571 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 16 1.6256 -0.7781 3.9212 16 8 1.0211 -2.0455 3.7029 17 8 1.0524 0.1621 4.8194 18 6 3.4006 -0.9669 4.2446 19 1 3.9472 -0.0270 4.1672 20 6 3.7126 -1.7572 5.5264 21 6 4.8536 -2.4263 4.7420 22 1 5.7990 -1.8869 4.8011 23 6 5.0010 -3.8985 5.0286 24 8 4.2577 -4.4385 5.8133 25 8 5.9586 -4.6095 4.4129 26 6 4.0487 -2.1245 3.4670 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -1.7489 -1.2493 35 1 2.8593 -1.8838 -4.7336 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -1.7489 1.2492 38 1 1.1850 0.8645 2.3729 39 1 2.9203 -2.4467 5.8180 40 1 4.0568 -1.1344 6.3520 41 1 6.0144 -5.5504 4.6292 42 1 4.6644 -1.7970 2.6292 43 1 3.3483 -2.9143 3.1956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590656643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:41 Heat of formation + Delta-G solvation = -159.229165 kcal Electronic energy + Delta-G solvation = -25744.557529 eV Core-core repulsion = 21917.199398 eV Total energy + Delta-G solvation = -3827.358131 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98257 -38.56069 -37.73883 -37.02648 -36.32862 -35.93956 -33.58663 -31.92314 -28.17761 -27.06481 -26.48510 -26.39383 -25.84340 -23.03740 -22.75743 -20.13673 -19.37949 -18.54828 -18.43294 -17.85291 -17.14175 -16.51499 -16.35220 -16.01733 -15.70719 -15.30713 -14.58928 -14.49824 -14.21978 -13.69576 -13.39753 -13.14151 -13.01267 -12.82079 -12.62439 -12.42371 -12.10830 -12.08767 -12.02624 -11.92867 -11.86651 -11.81416 -11.24752 -11.18098 -11.00522 -10.87780 -10.84960 -10.63223 -10.49293 -10.39028 -10.27339 -9.89980 -9.26541 -9.16168 -8.92975 -8.37719 -6.02561 -4.03280 0.22778 1.83880 2.68837 2.73515 3.31007 3.36328 3.38167 3.46214 3.66668 3.89374 3.95292 4.34095 4.43315 4.47871 4.93734 4.98061 5.13106 5.16255 5.24563 5.32066 5.33357 5.40952 5.54550 5.67787 5.73841 5.82868 6.09160 6.18174 6.22011 6.31608 6.38910 6.64761 6.67808 7.04088 7.07613 7.12602 7.18503 7.57206 7.59537 7.72998 7.96126 8.38955 9.01093 9.60033 11.08844 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003432 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.557588 B = 8157.724193 C = 9363.864375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.122 3.878 14 N -1.110 6.110 15 S 2.617 3.383 16 O -0.948 6.948 17 O -0.964 6.964 18 C -0.629 4.629 19 H 0.160 0.840 20 C -0.091 4.091 21 C -0.097 4.097 22 H 0.134 0.866 23 C 0.487 3.513 24 O -0.511 6.511 25 O -0.512 6.512 26 C -0.094 4.094 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.416 0.584 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.411 0.589 42 H 0.106 0.894 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 0.047 17.381 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.185 4.185 4 C -0.003 4.003 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.004 4.004 14 N -0.872 5.872 15 S 2.708 3.292 16 O -0.938 6.938 17 O -0.954 6.954 18 C -0.736 4.736 19 H 0.178 0.822 20 C -0.130 4.130 21 C -0.117 4.117 22 H 0.152 0.848 23 C 0.329 3.671 24 O -0.399 6.399 25 O -0.324 6.324 26 C -0.132 4.132 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.253 0.747 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.908 -0.243 17.914 18.865 hybrid contribution 0.408 0.328 -1.046 1.170 sum 6.316 0.085 16.868 18.012 Atomic orbital electron populations 1.21751 0.95108 1.01345 1.00366 1.20811 0.95742 0.95672 0.94495 1.21767 1.00311 0.96043 1.00418 1.19127 0.96211 0.95338 0.89645 1.21163 1.31202 1.12094 0.90536 0.92295 1.24992 0.95295 0.95061 0.99041 1.69941 1.37026 1.22984 1.23547 0.86719 0.79222 0.79744 0.82659 1.20354 1.21419 1.20320 1.21627 0.97822 0.96473 0.84452 1.55508 1.78320 1.30514 1.22866 1.04772 0.76690 0.74419 0.73350 1.93620 1.72016 1.43640 1.84512 1.93581 1.75059 1.62515 1.64259 1.32060 1.28137 1.07255 1.06194 0.82234 1.22630 0.98442 0.97487 0.94449 1.22429 1.01339 0.88475 0.99490 0.84782 1.23267 0.76758 0.90249 0.76835 1.90740 1.43076 1.72107 1.33950 1.84547 1.53354 1.28143 1.66348 1.22697 0.99022 0.95485 0.96004 0.94851 0.91639 0.93292 0.93387 0.91443 0.95018 0.96374 0.96251 0.93007 0.92127 0.90591 0.74721 0.87524 0.88264 0.72969 0.87528 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.05 37.15 0.30 -2.00 16 2 C -0.07 -1.17 0.55 -154.51 -0.08 -1.26 16 3 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 4 C 0.03 0.80 4.04 -27.88 -0.11 0.68 16 5 C -0.51 -13.19 7.65 -34.44 -0.26 -13.45 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.62 13.29 55.43 0.74 -24.88 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.12 1.79 4.59 -4.04 -0.02 1.77 16 14 N -1.11 -14.06 5.22 -10.61 -0.06 -14.11 16 15 S 2.62 32.65 5.39 -107.50 -0.58 32.07 16 16 O -0.95 -15.11 16.81 -57.54 -0.97 -16.07 16 17 O -0.96 -14.44 18.08 -57.54 -1.04 -15.48 16 18 C -0.63 -5.35 4.41 -25.91 -0.11 -5.46 16 19 H 0.16 0.93 8.14 -51.93 -0.42 0.50 16 20 C -0.09 -0.77 6.99 -25.92 -0.18 -0.95 16 21 C -0.10 -0.77 4.26 -90.96 -0.39 -1.15 16 22 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 23 C 0.49 4.74 7.85 36.01 0.28 5.03 16 24 O -0.51 -6.58 16.66 -18.75 -0.31 -6.90 16 25 O -0.51 -3.93 13.42 -39.24 -0.53 -4.46 16 26 C -0.09 -0.82 6.32 -25.92 -0.16 -0.99 16 27 H 0.03 0.51 7.20 -51.93 -0.37 0.14 16 28 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 32 H 0.03 0.42 6.60 -51.93 -0.34 0.08 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 37 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 38 H 0.42 4.95 6.44 -34.47 -0.22 4.73 16 39 H 0.11 1.05 7.39 -51.93 -0.38 0.67 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.41 1.53 9.10 45.56 0.41 1.94 16 42 H 0.11 0.78 7.92 -51.93 -0.41 0.37 16 43 H 0.11 1.11 7.48 -51.93 -0.39 0.72 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -35.28 359.46 -8.47 -43.74 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.57 Total: 2.99 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -0.54 Total: -18.12 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.68 Total: -39.00 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -2.85 Total: -42.91 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 32.65 SS G_CDS: -0.58 Total: 32.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.28 -8.47 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.488 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds