Wall clock time and date at job start Tue Mar 31 2020 14:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47210 * 2 1 4 4 C 1.53004 * 109.47402 * 239.99912 * 2 1 3 5 5 C 1.50707 * 109.46724 * 59.99656 * 4 2 1 6 6 H 1.08001 * 119.99756 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99648 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00025 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99560 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47243 * 60.00285 * 9 7 5 11 11 H 1.48505 * 109.46698 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47435 * 299.99790 * 9 7 5 13 13 C 1.53004 * 109.47366 * 119.99923 * 2 1 3 14 14 N 1.46502 * 109.47015 * 300.00026 * 13 2 1 15 15 S 1.65596 * 119.99857 * 164.99725 * 14 13 2 16 16 O 1.42105 * 104.27813 * 308.93179 * 15 14 13 17 17 O 1.42099 * 104.27785 * 181.07232 * 15 14 13 18 18 C 1.81399 * 104.44900 * 64.99983 * 15 14 13 19 19 H 1.08997 * 112.85064 * 53.80467 * 18 15 14 20 20 C 1.53789 * 113.61368 * 184.99862 * 18 15 14 21 21 C 1.53778 * 87.07796 * 139.98282 * 20 18 15 22 22 H 1.09001 * 113.61738 * 89.20102 * 21 20 18 23 23 C 1.50706 * 113.61408 * 220.01916 * 21 20 18 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 21 20 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 21 20 26 26 C 1.53781 * 87.08523 * 334.56531 * 21 20 18 27 27 H 1.09001 * 109.47220 * 299.99840 * 1 2 3 28 28 H 1.08996 * 109.47189 * 60.00345 * 1 2 3 29 29 H 1.09000 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47092 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.46762 * 299.99916 * 3 2 1 32 32 H 1.09001 * 109.46898 * 59.99963 * 3 2 1 33 33 H 1.08997 * 109.47700 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47155 * 300.00257 * 4 2 1 35 35 H 0.97001 * 119.99833 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47187 * 179.97438 * 13 2 1 37 37 H 1.09000 * 109.46783 * 59.99993 * 13 2 1 38 38 H 0.96996 * 119.99910 * 344.99896 * 14 13 2 39 39 H 1.09001 * 113.61463 * 25.43342 * 20 18 15 40 40 H 1.08997 * 113.68843 * 254.54352 * 20 18 15 41 41 H 0.96700 * 117.00196 * 179.97438 * 25 23 21 42 42 H 1.09005 * 113.61410 * 139.97833 * 26 21 20 43 43 H 1.08991 * 113.61824 * 270.88770 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8674 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6256 -1.5520 -3.8526 9 14 1.2481 0.3988 -5.2571 10 1 1.7441 1.7984 -5.2573 11 1 1.7420 -0.3021 -6.4697 12 1 -0.2369 0.3998 -5.2571 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 16 1.6256 -0.7781 3.9212 16 8 1.0211 -2.0455 3.7029 17 8 1.0524 0.1621 4.8194 18 6 3.4006 -0.9669 4.2446 19 1 3.9472 -0.0270 4.1672 20 6 3.7126 -1.7572 5.5264 21 6 4.8536 -2.4263 4.7420 22 1 5.7990 -1.8869 4.8011 23 6 5.0010 -3.8985 5.0286 24 8 4.2577 -4.4385 5.8133 25 8 5.9586 -4.6095 4.4129 26 6 4.0487 -2.1245 3.4670 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -1.7489 -1.2493 35 1 2.8593 -1.8838 -4.7336 36 1 3.1300 -0.7216 1.2490 37 1 1.6766 -1.7489 1.2492 38 1 1.1850 0.8645 2.3729 39 1 2.9203 -2.4467 5.8180 40 1 4.0568 -1.1344 6.3520 41 1 6.0144 -5.5504 4.6292 42 1 4.6644 -1.7970 2.6292 43 1 3.3483 -2.9143 3.1956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590656643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:40 Heat of formation + Delta-G solvation = -186.160438 kcal Electronic energy + Delta-G solvation = -25745.725357 eV Core-core repulsion = 21917.199398 eV Total energy + Delta-G solvation = -3828.525959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69607 -39.31703 -39.06532 -38.11908 -37.06198 -37.03834 -35.17856 -33.60212 -28.95746 -28.83936 -27.88091 -27.24584 -26.96620 -24.59993 -23.76518 -20.85072 -20.30124 -19.82480 -19.30247 -18.73300 -18.29514 -18.18264 -17.24985 -16.96736 -16.56438 -16.46493 -16.13127 -15.64570 -15.50356 -14.90485 -14.44974 -14.38898 -14.01970 -13.87196 -13.78479 -13.63514 -13.35775 -13.20434 -13.13865 -13.07127 -12.85818 -12.69904 -12.65874 -12.56886 -12.54512 -12.24230 -12.13810 -11.94934 -11.78090 -11.58403 -11.49460 -11.25836 -10.89640 -10.79347 -10.44690 -10.22457 -8.09744 -6.15273 -0.73301 1.11291 1.44613 1.45684 1.52532 1.73728 2.11442 2.47386 2.63995 2.93310 3.08804 3.25205 3.31031 3.49022 3.81514 3.98778 4.20173 4.28554 4.37083 4.41497 4.45222 4.55178 4.57442 4.74174 4.78631 4.84835 4.87286 4.97503 5.06114 5.08042 5.20524 5.27427 5.54370 5.56292 5.59053 5.62609 5.64997 5.90280 5.97201 6.16555 6.39827 6.95713 6.99405 7.51611 9.01872 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003432 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.557588 B = 8157.724193 C = 9363.864375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.064 4.064 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.515 4.515 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.274 1.274 13 C 0.129 3.871 14 N -1.107 6.107 15 S 2.615 3.385 16 O -0.994 6.994 17 O -0.991 6.991 18 C -0.597 4.597 19 H 0.203 0.797 20 C -0.102 4.102 21 C -0.089 4.089 22 H 0.173 0.827 23 C 0.486 3.514 24 O -0.552 6.552 25 O -0.509 6.509 26 C -0.105 4.105 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.003 0.997 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.421 0.579 39 H 0.084 0.916 40 H 0.129 0.871 41 H 0.427 0.573 42 H 0.128 0.872 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 2.014 18.291 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.554 4.554 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.199 1.199 13 C 0.003 3.997 14 N -0.868 5.868 15 S 2.712 3.288 16 O -0.984 6.984 17 O -0.981 6.981 18 C -0.709 4.709 19 H 0.220 0.780 20 C -0.141 4.141 21 C -0.109 4.109 22 H 0.190 0.810 23 C 0.330 3.670 24 O -0.443 6.443 25 O -0.322 6.322 26 C -0.144 4.144 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.021 0.979 34 H 0.006 0.994 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.258 0.742 39 H 0.102 0.898 40 H 0.147 0.853 41 H 0.288 0.712 42 H 0.146 0.854 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.468 1.742 18.808 20.312 hybrid contribution -0.045 -0.361 -1.283 1.333 sum 7.423 1.381 17.526 19.083 Atomic orbital electron populations 1.21728 0.95353 1.00513 1.00872 1.20669 0.95561 0.96678 0.93610 1.21708 1.00781 0.94525 1.01103 1.19005 0.95094 0.94039 0.91748 1.21602 1.30277 1.11977 0.91510 0.91696 1.25799 0.95773 0.95846 1.02201 1.70071 1.38770 1.24662 1.23986 0.85743 0.78697 0.78981 0.79054 1.19219 1.21602 1.19917 1.21411 0.99263 0.95336 0.83673 1.55292 1.78907 1.30377 1.22222 1.04578 0.78561 0.72975 0.72680 1.93567 1.74703 1.45269 1.84861 1.93543 1.77075 1.62959 1.64555 1.31867 1.23338 1.09301 1.06394 0.78014 1.22782 0.98309 0.97652 0.95393 1.22567 1.02586 0.87516 0.98193 0.80986 1.23690 0.76169 0.91125 0.76000 1.90733 1.44570 1.73056 1.35895 1.84516 1.52436 1.29525 1.65749 1.22815 0.99168 0.95024 0.97363 0.92160 0.93226 0.94836 0.92649 0.93533 0.91549 0.97858 0.99435 0.93234 0.89431 0.92136 0.74154 0.89752 0.85262 0.71152 0.85351 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.05 71.98 0.58 -3.94 16 2 C -0.06 -2.23 0.55 -52.18 -0.03 -2.26 16 3 C -0.12 -3.77 8.05 71.98 0.58 -3.19 16 4 C 0.04 1.83 4.04 29.85 0.12 1.95 16 5 C -0.52 -26.78 7.65 25.60 0.20 -26.59 16 6 H 0.06 3.23 5.68 -2.91 -0.02 3.22 16 7 C 0.00 0.05 5.46 84.66 0.46 0.52 16 8 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 9 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.13 3.64 4.59 86.38 0.40 4.03 16 14 N -1.11 -25.90 5.22 -187.48 -0.98 -26.88 16 15 S 2.62 62.27 5.39 -56.49 -0.30 61.97 16 16 O -0.99 -32.38 16.81 -127.65 -2.15 -34.53 16 17 O -0.99 -28.52 18.08 -127.65 -2.31 -30.83 16 18 C -0.60 -8.19 4.41 31.12 0.14 -8.05 16 19 H 0.20 1.16 8.14 -2.39 -0.02 1.14 16 20 C -0.10 -1.45 6.99 31.12 0.22 -1.24 16 21 C -0.09 -1.11 4.26 -11.01 -0.05 -1.16 16 22 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 23 C 0.49 8.73 7.85 71.24 0.56 9.28 16 24 O -0.55 -14.10 16.66 21.97 0.37 -13.74 16 25 O -0.51 -6.86 13.42 -51.35 -0.69 -7.55 16 26 C -0.11 -1.57 6.32 31.12 0.20 -1.37 16 27 H 0.06 1.78 7.20 -2.39 -0.02 1.77 16 28 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.61 6.62 -2.39 -0.02 1.59 16 32 H 0.07 1.55 6.60 -2.39 -0.02 1.54 16 33 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 35 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.09 1.99 7.48 -2.39 -0.02 1.97 16 37 H 0.06 1.90 7.69 -2.39 -0.02 1.88 16 38 H 0.42 8.92 6.44 -96.75 -0.62 8.30 16 39 H 0.08 1.63 7.39 -2.39 -0.02 1.61 16 40 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.43 2.60 9.10 -74.06 -0.67 1.92 16 42 H 0.13 1.37 7.92 -2.38 -0.02 1.36 16 43 H 0.09 1.74 7.48 -2.39 -0.02 1.72 16 Total: -1.00 -79.08 359.46 -0.63 -79.72 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -0.25 Total: 13.15 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 3.37 Total: -32.01 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -0.69 Total: -81.06 kcal Atomic # 8 Polarization: -81.87 SS G_CDS: -4.78 Total: -86.65 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 62.27 SS G_CDS: -0.30 Total: 61.97 kcal Total: -79.08 -0.63 -79.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.444 kcal (2) G-P(sol) polarization free energy of solvation -79.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds