Wall clock time and date at job start Tue Mar 31 2020 13:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 S 1.81399 * 109.47162 * 60.00198 * 4 2 1 6 6 O 1.42097 * 110.54031 * 291.62403 * 5 4 2 7 7 O 1.42096 * 110.54122 * 68.37573 * 5 4 2 8 8 N 1.65601 * 104.44938 * 179.97438 * 5 4 2 9 9 C 1.46927 * 120.62977 * 269.71959 * 8 5 4 10 10 C 1.53625 * 108.54162 * 126.36920 * 9 8 5 11 11 C 1.53036 * 109.24312 * 54.85488 * 10 9 8 12 12 C 1.50701 * 109.45051 * 178.49742 * 11 10 9 13 13 H 1.08001 * 120.00017 * 120.06583 * 12 11 10 14 14 C 1.37881 * 119.99890 * 300.06327 * 12 11 10 15 15 N 1.31515 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99836 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47351 * 89.99746 * 16 14 12 18 18 H 1.48500 * 109.46995 * 209.99647 * 16 14 12 19 19 H 1.48502 * 109.47193 * 329.99390 * 16 14 12 20 20 C 1.53039 * 109.53951 * 298.50976 * 11 10 9 21 21 C 1.46924 * 120.62980 * 89.99822 * 8 5 4 22 22 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 23 23 O 1.20822 * 120.00226 * 120.00217 * 22 2 1 24 24 O 1.34230 * 119.99763 * 300.00083 * 22 2 1 25 25 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 30 30 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 31 31 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 33 33 H 1.08999 * 109.58644 * 246.20197 * 9 8 5 34 34 H 1.08993 * 109.58633 * 6.63005 * 9 8 5 35 35 H 1.09004 * 109.63857 * 294.86573 * 10 9 8 36 36 H 1.09000 * 109.43566 * 174.72218 * 10 9 8 37 37 H 1.09000 * 109.46275 * 58.53514 * 11 10 9 38 38 H 0.96994 * 120.00227 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.49570 * 301.41188 * 20 11 10 40 40 H 1.09003 * 109.50105 * 181.31270 * 20 11 10 41 41 H 1.08999 * 109.58679 * 353.37556 * 21 8 5 42 42 H 1.09002 * 109.58765 * 113.65564 * 21 8 5 43 43 H 0.96692 * 116.99954 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 1.4354 0.1339 -2.7304 6 8 0.0280 -0.0183 -2.8544 7 8 2.0480 1.4099 -2.8544 8 7 2.0541 -0.7400 -3.9936 9 6 3.3632 -0.4010 -4.5683 10 6 4.2391 -1.6630 -4.5667 11 6 3.5041 -2.7881 -5.2987 12 6 4.3747 -4.0177 -5.3321 13 1 4.0312 -4.9351 -4.8771 14 6 5.6096 -3.9717 -5.9436 15 7 6.0276 -2.8548 -6.4981 16 14 6.6884 -5.4961 -5.9856 17 1 6.3880 -6.2816 -7.2094 18 1 8.1171 -5.0913 -5.9955 19 1 6.4178 -6.3272 -4.7850 20 6 2.1985 -3.1075 -4.5670 21 6 1.3019 -1.8654 -4.5649 22 6 2.0323 -0.7105 1.2305 23 8 2.7270 -1.6928 1.1196 24 8 1.7080 -0.2519 2.4496 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 3.2324 -0.0449 -5.5902 34 1 3.8365 0.3748 -3.9665 35 1 4.4403 -1.9680 -3.5397 36 1 5.1800 -1.4521 -5.0750 37 1 3.2813 -2.4732 -6.3182 38 1 6.8962 -2.8225 -6.9286 39 1 2.4190 -3.3988 -3.5400 40 1 1.6868 -3.9246 -5.0755 41 1 0.4147 -2.0560 -3.9610 42 1 1.0043 -1.6253 -5.5857 43 1 2.0534 -0.7410 3.2088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590788996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:41 Heat of formation + Delta-G solvation = -172.944543 kcal Electronic energy + Delta-G solvation = -26702.504286 eV Core-core repulsion = 22874.551412 eV Total energy + Delta-G solvation = -3827.952874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79830 -37.77443 -37.10255 -36.85916 -36.25616 -35.71891 -33.44832 -30.89807 -30.09378 -28.08285 -27.73078 -25.76612 -24.67417 -22.54549 -22.34611 -20.51693 -19.40286 -18.47500 -18.10387 -17.69366 -16.66574 -16.27060 -16.16528 -15.78762 -15.76341 -14.66030 -14.47401 -14.32036 -13.92537 -13.91148 -13.42893 -13.19868 -13.13032 -12.94887 -12.80733 -12.49438 -12.20348 -12.10001 -11.86627 -11.80587 -11.66510 -11.62427 -11.48265 -11.32026 -11.06697 -10.95714 -10.86335 -10.65344 -10.43488 -10.37620 -10.07903 -9.61985 -9.23317 -9.01063 -8.43133 -8.26975 -6.02680 -4.09038 0.31883 1.94584 2.65090 2.85470 3.28174 3.35497 3.38623 3.75299 4.07886 4.13746 4.39824 4.40852 4.42414 4.92125 5.07378 5.09752 5.27062 5.29539 5.33443 5.42911 5.43952 5.66777 5.71596 5.86592 5.88231 5.89703 6.06491 6.13065 6.21468 6.30281 6.39119 6.41083 6.69285 6.86902 7.04191 7.14336 7.38732 7.62923 7.69125 7.92724 8.05806 8.40237 8.94656 9.56205 11.02732 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.004138 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.194747 B = 6765.050656 C = 7583.228299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.033 4.033 3 C -0.176 4.176 4 C -0.626 4.626 5 S 2.614 3.386 6 O -0.957 6.957 7 O -0.954 6.954 8 N -0.989 5.989 9 C 0.117 3.883 10 C -0.126 4.126 11 C 0.050 3.950 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.127 4.127 21 C 0.121 3.879 22 C 0.493 3.507 23 O -0.502 6.502 24 O -0.513 6.513 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.104 0.896 37 H 0.029 0.971 38 H 0.260 0.740 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.722 7.730 13.552 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.036 4.036 3 C -0.233 4.233 4 C -0.753 4.753 5 S 2.706 3.294 6 O -0.947 6.947 7 O -0.944 6.944 8 N -0.828 5.828 9 C -0.007 4.007 10 C -0.165 4.165 11 C 0.032 3.968 12 C -0.551 4.551 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.166 4.166 21 C -0.004 4.004 22 C 0.334 3.666 23 O -0.388 6.388 24 O -0.325 6.325 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -10.056 8.502 13.008 18.509 hybrid contribution 1.484 -1.935 0.850 2.582 sum -8.572 6.566 13.858 17.568 Atomic orbital electron populations 1.22392 0.90413 1.04875 1.05569 1.20096 0.98276 0.96447 0.88765 1.22398 1.03349 0.91998 1.05558 1.30910 1.14220 1.14570 1.15551 1.04881 0.74514 0.74909 0.75069 1.93557 1.29099 1.86784 1.85270 1.93567 1.78226 1.37430 1.85171 1.57543 1.31070 1.47152 1.47025 1.21841 0.81236 0.99064 0.98560 1.22132 1.00820 0.93475 1.00117 1.18590 0.89923 0.93944 0.94380 1.21217 1.01531 0.96570 1.35827 0.92729 1.24956 0.97837 0.95908 0.95238 1.69836 1.20199 1.25554 1.37367 0.86634 0.79785 0.83430 0.78372 1.20736 1.21282 1.20027 1.22051 0.98369 0.95020 1.01122 1.21555 0.93453 0.86339 0.99025 1.23049 0.76944 0.82224 0.84421 1.90762 1.35180 1.25747 1.87098 1.84497 1.72325 1.58988 1.16644 0.89686 0.89187 0.90615 0.90530 0.89171 0.89693 0.83884 0.84057 0.91356 0.90870 0.94283 0.87784 0.95300 0.92963 0.92957 0.92043 0.90688 0.91286 0.73065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 7.93 37.16 0.29 -1.47 16 2 C -0.03 -0.38 0.73 -155.66 -0.11 -0.49 16 3 C -0.18 -1.82 7.93 37.16 0.29 -1.52 16 4 C -0.63 -8.10 4.47 37.16 0.17 -7.94 16 5 S 2.61 38.63 4.45 -107.50 -0.48 38.15 16 6 O -0.96 -15.11 14.35 -57.54 -0.83 -15.94 16 7 O -0.95 -15.57 14.33 -57.54 -0.82 -16.39 16 8 N -0.99 -16.43 3.21 -113.27 -0.36 -16.80 16 9 C 0.12 2.13 6.34 -3.48 -0.02 2.11 16 10 C -0.13 -2.74 5.17 -26.39 -0.14 -2.88 16 11 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 12 C -0.51 -13.47 8.56 -34.44 -0.29 -13.77 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.38 11.31 55.43 0.63 -23.75 16 16 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 20 C -0.13 -2.41 5.30 -26.61 -0.14 -2.55 16 21 C 0.12 2.00 6.31 -3.71 -0.02 1.97 16 22 C 0.49 5.74 6.92 36.01 0.25 5.99 16 23 O -0.50 -7.54 16.74 -18.75 -0.31 -7.86 16 24 O -0.51 -4.21 13.23 -39.26 -0.52 -4.72 16 25 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 26 H 0.09 0.97 5.46 -51.93 -0.28 0.69 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.00 5.46 -51.93 -0.28 0.72 16 30 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 31 H 0.14 1.86 8.10 -51.92 -0.42 1.44 16 32 H 0.14 1.77 8.10 -51.92 -0.42 1.34 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.21 7.09 -51.93 -0.37 0.85 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 2.55 6.03 -51.93 -0.31 2.23 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.07 1.08 7.10 -51.93 -0.37 0.71 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.41 1.67 9.10 45.56 0.41 2.09 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -32.19 349.37 -8.28 -40.46 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.81 Total: 3.80 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.01 Total: -18.01 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.26 Total: -40.55 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -2.48 Total: -44.91 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 38.63 SS G_CDS: -0.48 Total: 38.15 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.19 -8.28 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590788996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.480 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds