Wall clock time and date at job start Tue Mar 31 2020 13:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47092 * 239.99925 * 2 1 3 5 5 S 1.81399 * 109.47162 * 60.00198 * 4 2 1 6 6 O 1.42097 * 110.54031 * 291.62403 * 5 4 2 7 7 O 1.42096 * 110.54122 * 68.37573 * 5 4 2 8 8 N 1.65601 * 104.44938 * 179.97438 * 5 4 2 9 9 C 1.46927 * 120.62977 * 269.71959 * 8 5 4 10 10 C 1.53625 * 108.54162 * 126.36920 * 9 8 5 11 11 C 1.53036 * 109.24312 * 54.85488 * 10 9 8 12 12 C 1.50701 * 109.45051 * 178.49742 * 11 10 9 13 13 H 1.08001 * 120.00017 * 120.06583 * 12 11 10 14 14 C 1.37881 * 119.99890 * 300.06327 * 12 11 10 15 15 N 1.31515 * 120.00118 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99836 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47351 * 89.99746 * 16 14 12 18 18 H 1.48500 * 109.46995 * 209.99647 * 16 14 12 19 19 H 1.48502 * 109.47193 * 329.99390 * 16 14 12 20 20 C 1.53039 * 109.53951 * 298.50976 * 11 10 9 21 21 C 1.46924 * 120.62980 * 89.99822 * 8 5 4 22 22 C 1.50706 * 109.47103 * 120.00197 * 2 1 3 23 23 O 1.20822 * 120.00226 * 120.00217 * 22 2 1 24 24 O 1.34230 * 119.99763 * 300.00083 * 22 2 1 25 25 H 1.08992 * 109.47280 * 299.99702 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 30 30 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 31 31 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47059 * 299.99666 * 4 2 1 33 33 H 1.08999 * 109.58644 * 246.20197 * 9 8 5 34 34 H 1.08993 * 109.58633 * 6.63005 * 9 8 5 35 35 H 1.09004 * 109.63857 * 294.86573 * 10 9 8 36 36 H 1.09000 * 109.43566 * 174.72218 * 10 9 8 37 37 H 1.09000 * 109.46275 * 58.53514 * 11 10 9 38 38 H 0.96994 * 120.00227 * 180.02562 * 15 14 12 39 39 H 1.09002 * 109.49570 * 301.41188 * 20 11 10 40 40 H 1.09003 * 109.50105 * 181.31270 * 20 11 10 41 41 H 1.08999 * 109.58679 * 353.37556 * 21 8 5 42 42 H 1.09002 * 109.58765 * 113.65564 * 21 8 5 43 43 H 0.96692 * 116.99954 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 16 1.4354 0.1339 -2.7304 6 8 0.0280 -0.0183 -2.8544 7 8 2.0480 1.4099 -2.8544 8 7 2.0541 -0.7400 -3.9936 9 6 3.3632 -0.4010 -4.5683 10 6 4.2391 -1.6630 -4.5667 11 6 3.5041 -2.7881 -5.2987 12 6 4.3747 -4.0177 -5.3321 13 1 4.0312 -4.9351 -4.8771 14 6 5.6096 -3.9717 -5.9436 15 7 6.0276 -2.8548 -6.4981 16 14 6.6884 -5.4961 -5.9856 17 1 6.3880 -6.2816 -7.2094 18 1 8.1171 -5.0913 -5.9955 19 1 6.4178 -6.3272 -4.7850 20 6 2.1985 -3.1075 -4.5670 21 6 1.3019 -1.8654 -4.5649 22 6 2.0323 -0.7105 1.2305 23 8 2.7270 -1.6928 1.1196 24 8 1.7080 -0.2519 2.4496 25 1 -0.3633 0.5137 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 3.2324 -0.0449 -5.5902 34 1 3.8365 0.3748 -3.9665 35 1 4.4403 -1.9680 -3.5397 36 1 5.1800 -1.4521 -5.0750 37 1 3.2813 -2.4732 -6.3182 38 1 6.8962 -2.8225 -6.9286 39 1 2.4190 -3.3988 -3.5400 40 1 1.6868 -3.9246 -5.0755 41 1 0.4147 -2.0560 -3.9610 42 1 1.0043 -1.6253 -5.5857 43 1 2.0534 -0.7410 3.2088 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590788996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:40 Heat of formation + Delta-G solvation = -195.093685 kcal Electronic energy + Delta-G solvation = -26703.464745 eV Core-core repulsion = 22874.551412 eV Total energy + Delta-G solvation = -3828.913333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67054 -39.30788 -38.33431 -37.71657 -37.19675 -36.84930 -35.27237 -32.62816 -31.66410 -29.06617 -28.49670 -27.60573 -25.52771 -24.16733 -23.93240 -21.51423 -20.82106 -19.76060 -19.00535 -18.94161 -18.27339 -17.53225 -17.32213 -16.89829 -16.79284 -16.52035 -15.55799 -15.47178 -14.99698 -14.92379 -14.85992 -14.67044 -14.47467 -14.35162 -14.10800 -13.81232 -13.43984 -13.18839 -13.07245 -12.94680 -12.83329 -12.63095 -12.59039 -12.55410 -12.43970 -12.38852 -12.31095 -12.10596 -12.01558 -11.86931 -11.40177 -11.39855 -10.94458 -10.78353 -10.37068 -9.82812 -8.05239 -6.18341 -0.85861 1.07065 1.41336 1.43596 1.51959 1.53656 1.96032 2.45077 2.67818 3.03644 3.06488 3.21475 3.47002 3.58556 3.75097 4.09214 4.17197 4.29879 4.39985 4.46671 4.53030 4.54550 4.65262 4.67054 4.68037 4.74847 4.77938 4.84320 4.94803 5.11698 5.13602 5.15625 5.32243 5.36217 5.51417 5.56368 5.64822 5.72354 6.04876 6.20611 6.43005 6.90630 6.93421 7.49551 8.98050 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.004138 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.194747 B = 6765.050656 C = 7583.228299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.039 4.039 3 C -0.180 4.180 4 C -0.619 4.619 5 S 2.629 3.371 6 O -0.965 6.965 7 O -0.970 6.970 8 N -0.995 5.995 9 C 0.126 3.874 10 C -0.118 4.118 11 C 0.044 3.956 12 C -0.532 4.532 13 H 0.050 0.950 14 C 0.016 3.984 15 N -0.914 5.914 16 Si 0.946 3.054 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.120 4.120 21 C 0.122 3.878 22 C 0.503 3.497 23 O -0.542 6.542 24 O -0.499 6.499 25 H 0.109 0.891 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.000 1.000 38 H 0.260 0.740 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 7.930 15.459 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.041 4.041 3 C -0.237 4.237 4 C -0.748 4.748 5 S 2.723 3.277 6 O -0.955 6.955 7 O -0.960 6.960 8 N -0.833 5.833 9 C 0.001 3.999 10 C -0.158 4.158 11 C 0.025 3.975 12 C -0.570 4.570 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.554 5.554 16 Si 0.773 3.227 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.159 4.159 21 C -0.003 4.003 22 C 0.345 3.655 23 O -0.432 6.432 24 O -0.312 6.312 25 H 0.127 0.873 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.018 0.982 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -11.172 8.717 14.916 20.574 hybrid contribution 1.792 -1.979 0.348 2.692 sum -9.381 6.739 15.264 19.142 Atomic orbital electron populations 1.22460 0.89244 1.05453 1.06397 1.20180 0.99251 0.96703 0.87988 1.22466 1.03420 0.91419 1.06397 1.30778 1.14113 1.14733 1.15135 1.04456 0.73996 0.74302 0.74942 1.93547 1.29520 1.86822 1.85615 1.93548 1.78414 1.38457 1.85601 1.57566 1.30249 1.47311 1.48194 1.21595 0.81684 0.97568 0.99036 1.21914 1.00049 0.94739 0.99097 1.18589 0.91819 0.93411 0.93650 1.21611 1.02226 0.97545 1.35600 0.93136 1.25646 0.99125 0.98336 0.95199 1.69969 1.20412 1.27016 1.37964 0.85739 0.78146 0.80452 0.78372 1.20351 1.21120 1.19683 1.21925 0.96799 0.96604 1.00561 1.21568 0.93615 0.85070 1.00038 1.22959 0.75955 0.81332 0.85267 1.90760 1.37116 1.27531 1.87747 1.84442 1.71723 1.58755 1.16327 0.87271 0.89987 0.90220 0.90612 0.90015 0.87204 0.84045 0.83468 0.91840 0.89209 0.94512 0.90868 0.98156 0.93094 0.92668 0.91560 0.87941 0.91048 0.70711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 7.93 71.98 0.57 -2.52 16 2 C -0.04 -0.79 0.73 -52.93 -0.04 -0.83 16 3 C -0.18 -3.30 7.93 71.98 0.57 -2.73 16 4 C -0.62 -15.03 4.47 71.98 0.32 -14.71 16 5 S 2.63 73.74 4.45 -56.49 -0.25 73.49 16 6 O -0.96 -28.58 14.35 -127.65 -1.83 -30.42 16 7 O -0.97 -30.45 14.33 -127.65 -1.83 -32.28 16 8 N -1.00 -32.15 3.21 -512.29 -1.65 -33.79 16 9 C 0.13 4.59 6.34 86.51 0.55 5.14 16 10 C -0.12 -5.25 5.17 30.82 0.16 -5.10 16 11 C 0.04 2.08 2.06 -11.51 -0.02 2.05 16 12 C -0.53 -28.35 8.56 25.60 0.22 -28.13 16 13 H 0.05 2.66 7.74 -2.91 -0.02 2.64 16 14 C 0.02 0.84 5.30 84.66 0.45 1.29 16 15 N -0.91 -51.24 11.31 21.45 0.24 -51.00 16 16 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 C -0.12 -4.52 5.30 30.67 0.16 -4.35 16 21 C 0.12 3.87 6.31 86.36 0.55 4.41 16 22 C 0.50 10.51 6.92 71.24 0.49 11.01 16 23 O -0.54 -15.47 16.74 21.98 0.37 -15.10 16 24 O -0.50 -6.55 13.23 -51.41 -0.68 -7.23 16 25 H 0.11 1.34 8.11 -2.39 -0.02 1.32 16 26 H 0.08 1.58 5.46 -2.39 -0.01 1.57 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.08 1.66 5.46 -2.39 -0.01 1.65 16 30 H 0.11 1.43 8.11 -2.39 -0.02 1.41 16 31 H 0.14 3.53 8.10 -2.39 -0.02 3.51 16 32 H 0.15 3.43 8.10 -2.39 -0.02 3.41 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 2.95 7.09 -2.39 -0.02 2.93 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 3.71 6.03 -2.39 -0.01 3.70 16 37 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 38 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.10 2.71 7.10 -2.39 -0.02 2.69 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.43 2.11 9.10 -74.06 -0.67 1.44 16 Total: -1.00 -69.04 349.37 0.72 -68.32 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.35 Total: 17.37 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 3.98 Total: -34.47 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.40 Total: -84.79 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -3.97 Total: -85.03 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 73.74 SS G_CDS: -0.25 Total: 73.49 kcal Total: -69.04 0.72 -68.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590788996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.772 kcal (2) G-P(sol) polarization free energy of solvation -69.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds