Wall clock time and date at job start Tue Mar 31 2020 13:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.50698 * 109.47259 * 59.99838 * 3 2 1 5 5 O 1.20818 * 120.00082 * 359.97438 * 4 3 2 6 6 O 1.34229 * 119.99909 * 180.02562 * 4 3 2 7 7 N 1.46491 * 109.47039 * 239.99512 * 2 1 3 8 8 S 1.65603 * 120.00130 * 174.47147 * 7 2 1 9 9 O 1.42094 * 104.28091 * 181.81389 * 8 7 2 10 10 O 1.42106 * 104.27419 * 309.66759 * 8 7 2 11 11 C 1.81400 * 104.45144 * 65.73606 * 8 7 2 12 12 C 1.52999 * 109.47118 * 171.35947 * 11 8 7 13 13 C 1.52996 * 109.47205 * 180.02562 * 12 11 8 14 14 C 1.50696 * 109.47581 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00691 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00245 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99464 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46964 * 90.00384 * 18 16 14 20 20 H 1.48503 * 109.47034 * 209.99995 * 18 16 14 21 21 H 1.48502 * 109.47295 * 330.00177 * 18 16 14 22 22 C 1.53006 * 109.46959 * 119.99572 * 2 1 3 23 23 C 1.53000 * 117.51609 * 353.01313 * 22 2 1 24 24 C 1.52996 * 59.99925 * 107.47845 * 23 22 2 25 25 H 1.08998 * 109.46824 * 303.85283 * 1 2 3 26 26 H 1.08992 * 109.46912 * 63.84932 * 1 2 3 27 27 H 1.08999 * 109.47058 * 183.85546 * 1 2 3 28 28 H 1.09001 * 109.47109 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47009 * 299.99429 * 3 2 1 30 30 H 0.96704 * 116.99975 * 180.02562 * 6 4 3 31 31 H 0.96999 * 120.00716 * 354.46842 * 7 2 1 32 32 H 1.08999 * 109.47300 * 291.36040 * 11 8 7 33 33 H 1.08995 * 109.46782 * 51.35922 * 11 8 7 34 34 H 1.08999 * 109.47110 * 300.00209 * 12 11 8 35 35 H 1.08999 * 109.46956 * 59.99961 * 12 11 8 36 36 H 1.08999 * 109.47017 * 299.99972 * 13 12 11 37 37 H 1.09006 * 109.47372 * 59.99586 * 13 12 11 38 38 H 0.97001 * 119.99862 * 179.97438 * 17 16 14 39 39 H 1.08993 * 115.54943 * 207.30836 * 22 2 1 40 40 H 1.09001 * 117.49567 * 214.96961 * 23 22 2 41 41 H 1.08999 * 117.50041 * 359.97438 * 23 22 2 42 42 H 1.09000 * 117.49812 * 252.50439 * 24 23 22 43 43 H 1.09008 * 117.52232 * 107.48129 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5378 2.1529 1.2304 5 8 0.8427 1.5660 2.0255 6 8 1.8616 3.4382 1.4425 7 7 2.0184 -0.6907 -1.1960 8 16 3.6402 -0.7235 -1.5292 9 8 3.7310 -1.4271 -2.7603 10 8 4.0458 0.6349 -1.4301 11 6 4.3594 -1.7024 -0.1819 12 6 5.8306 -1.9891 -0.4888 13 6 6.4370 -2.8152 0.6472 14 6 7.8859 -3.0982 0.3447 15 1 8.3297 -2.7263 -0.5670 16 6 8.6447 -3.8326 1.2311 17 7 9.9093 -4.0791 0.9672 18 14 7.8768 -4.4764 2.8076 19 1 7.3048 -5.8252 2.5647 20 1 8.9158 -4.5626 3.8651 21 1 6.7993 -3.5534 3.2463 22 6 2.0401 -0.7212 1.2494 23 6 1.0058 -1.1358 2.2978 24 6 1.6677 -2.1959 1.4152 25 1 -0.3633 0.5725 0.8534 26 1 -0.3633 0.4529 -0.9224 27 1 -0.3633 -1.0253 0.0691 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.5162 3.8512 2.2458 31 1 1.3918 -1.1289 -1.7929 32 1 4.2850 -1.1451 0.7519 33 1 3.8178 -2.6435 -0.0875 34 1 5.9050 -2.5463 -1.4226 35 1 6.3721 -1.0478 -0.5832 36 1 6.3625 -2.2583 1.5812 37 1 5.8953 -3.7565 0.7413 38 1 10.4432 -4.5955 1.5910 39 1 3.0205 -0.4064 1.6065 40 1 1.3060 -1.0939 3.3449 41 1 -0.0381 -0.8945 2.0979 42 1 1.0591 -2.6522 0.6345 43 1 2.4035 -2.8515 1.8811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592329805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:07 Heat of formation + Delta-G solvation = -135.468744 kcal Electronic energy + Delta-G solvation = -26523.209166 eV Core-core repulsion = 22696.881364 eV Total energy + Delta-G solvation = -3826.327802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97511 -38.97731 -37.04296 -36.21998 -35.91838 -35.02232 -34.59506 -32.22448 -31.04991 -28.71780 -28.29128 -24.56822 -23.59418 -22.42399 -21.87985 -20.67771 -19.73801 -19.07646 -18.37997 -17.62555 -17.13074 -16.92054 -16.29678 -16.09901 -16.00568 -15.58362 -14.94447 -14.67243 -14.30823 -14.20181 -13.44309 -13.42574 -13.01824 -12.83608 -12.58344 -12.35048 -12.20600 -12.18708 -12.08015 -11.90969 -11.82957 -11.58941 -11.55165 -11.31503 -11.03287 -10.98483 -10.85166 -10.62024 -10.42244 -10.13033 -10.06368 -9.96627 -9.83395 -9.46338 -9.26204 -8.59669 -6.09326 -4.08542 0.36134 2.02397 2.52821 2.96249 3.25510 3.33361 3.34961 3.69192 3.80156 4.12667 4.22974 4.39303 4.39968 4.61217 4.82449 4.86357 4.99213 5.04213 5.10163 5.16788 5.23471 5.24739 5.29434 5.49626 5.61208 5.65533 5.76023 5.81324 5.87814 5.91952 6.01929 6.09456 6.14512 6.28231 6.36211 6.66122 6.80090 7.11997 7.26013 7.70363 7.71668 8.46830 8.95303 9.51939 11.04023 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.004093 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.315653 B = 6838.682351 C = 7416.108191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.226 3.774 3 C -0.149 4.149 4 C 0.484 3.516 5 O -0.504 6.504 6 O -0.516 6.516 7 N -1.110 6.110 8 S 2.597 3.403 9 O -0.959 6.959 10 O -0.961 6.961 11 C -0.615 4.615 12 C -0.097 4.097 13 C -0.003 4.003 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.193 4.193 23 C -0.136 4.136 24 C -0.180 4.180 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.146 0.854 29 H 0.115 0.885 30 H 0.408 0.592 31 H 0.418 0.582 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.019 0.981 37 H 0.016 0.984 38 H 0.264 0.736 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.142 10.654 0.897 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.137 3.863 3 C -0.188 4.188 4 C 0.326 3.674 5 O -0.393 6.393 6 O -0.327 6.327 7 N -0.866 5.866 8 S 2.694 3.306 9 O -0.950 6.950 10 O -0.951 6.951 11 C -0.747 4.747 12 C -0.137 4.137 13 C -0.042 4.042 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.213 4.213 23 C -0.174 4.174 24 C -0.217 4.217 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.164 0.836 29 H 0.134 0.866 30 H 0.267 0.733 31 H 0.253 0.747 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.496 10.741 0.151 24.929 hybrid contribution -0.730 -0.702 1.743 2.016 sum -23.226 10.040 1.894 25.374 Atomic orbital electron populations 1.22427 0.92338 1.03659 1.03896 1.19167 0.95899 0.88381 0.82862 1.22412 1.07067 0.94375 0.94951 1.23252 0.76914 0.79687 0.87546 1.90671 1.35724 1.66237 1.46624 1.84570 1.72445 1.27278 1.48442 1.55776 1.26783 1.69303 1.34762 1.05347 0.73124 0.75781 0.76362 1.93588 1.84928 1.75618 1.40826 1.93503 1.81610 1.32931 1.87068 1.30859 1.10005 1.15361 1.18482 1.21322 0.87864 1.02129 1.02350 1.19510 0.96697 0.94592 0.93362 1.21137 0.93297 1.34207 1.07836 0.90742 1.25015 0.94695 0.95600 0.98025 1.69909 1.07002 1.39974 1.37010 0.86794 0.79295 0.79680 0.83583 1.20222 1.21296 1.19064 1.22956 1.01199 0.98476 0.98670 1.22910 0.98117 1.00632 0.95698 1.23123 1.04168 0.90891 1.03479 0.88355 0.92117 0.91424 0.83625 0.86648 0.73308 0.74711 0.85104 0.84948 0.90863 0.91274 0.96269 0.96613 0.92627 0.87239 0.89044 0.87841 0.88439 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 6.96 37.16 0.26 -0.99 16 2 C 0.23 2.08 0.70 -131.82 -0.09 1.99 16 3 C -0.15 -1.48 4.15 -27.88 -0.12 -1.60 16 4 C 0.48 4.61 7.74 36.00 0.28 4.89 16 5 O -0.50 -5.25 11.93 -18.74 -0.22 -5.48 16 6 O -0.52 -4.14 13.42 -39.26 -0.53 -4.67 16 7 N -1.11 -10.57 5.33 0.54 0.00 -10.56 16 8 S 2.60 34.85 5.39 -107.50 -0.58 34.27 16 9 O -0.96 -16.05 18.08 -57.54 -1.04 -17.09 16 10 O -0.96 -14.56 14.36 -57.54 -0.83 -15.38 16 11 C -0.62 -8.64 4.46 37.16 0.17 -8.47 16 12 C -0.10 -1.84 5.16 -26.73 -0.14 -1.98 16 13 C 0.00 -0.07 4.04 -27.89 -0.11 -0.18 16 14 C -0.53 -14.85 9.66 -34.44 -0.33 -15.18 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 18 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 22 C -0.19 -1.92 2.24 -90.62 -0.20 -2.12 16 23 C -0.14 -1.26 7.94 -26.73 -0.21 -1.48 16 24 C -0.18 -1.66 8.45 -26.74 -0.23 -1.89 16 25 H 0.10 0.82 4.71 -51.93 -0.24 0.58 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.45 6.82 -51.93 -0.35 0.10 16 28 H 0.15 1.67 5.37 -51.93 -0.28 1.39 16 29 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.41 1.48 9.10 45.56 0.41 1.89 16 31 H 0.42 3.13 8.57 -34.46 -0.30 2.84 16 32 H 0.13 1.64 5.45 -51.92 -0.28 1.36 16 33 H 0.13 1.62 7.33 -51.93 -0.38 1.24 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 37 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.11 1.16 6.21 -51.93 -0.32 0.84 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 0.89 5.83 -51.93 -0.30 0.59 16 42 H 0.10 0.78 7.69 -51.93 -0.40 0.38 16 43 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 344.66 15.07 5.19 5.19 Total: -1.00 -35.70 344.66 -8.06 -43.76 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.34 Total: 5.28 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -0.83 Total: -25.14 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.78 Total: -37.39 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -2.62 Total: -42.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 34.85 SS G_CDS: -0.58 Total: 34.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.70 -8.06 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592329805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.708 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds