Wall clock time and date at job start Tue Mar 31 2020 13:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.50698 * 109.47259 * 59.99838 * 3 2 1 5 5 O 1.20818 * 120.00082 * 359.97438 * 4 3 2 6 6 O 1.34229 * 119.99909 * 180.02562 * 4 3 2 7 7 N 1.46491 * 109.47039 * 239.99512 * 2 1 3 8 8 S 1.65603 * 120.00130 * 174.47147 * 7 2 1 9 9 O 1.42094 * 104.28091 * 181.81389 * 8 7 2 10 10 O 1.42106 * 104.27419 * 309.66759 * 8 7 2 11 11 C 1.81400 * 104.45144 * 65.73606 * 8 7 2 12 12 C 1.52999 * 109.47118 * 171.35947 * 11 8 7 13 13 C 1.52996 * 109.47205 * 180.02562 * 12 11 8 14 14 C 1.50696 * 109.47581 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00691 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00245 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99464 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46964 * 90.00384 * 18 16 14 20 20 H 1.48503 * 109.47034 * 209.99995 * 18 16 14 21 21 H 1.48502 * 109.47295 * 330.00177 * 18 16 14 22 22 C 1.53006 * 109.46959 * 119.99572 * 2 1 3 23 23 C 1.53000 * 117.51609 * 353.01313 * 22 2 1 24 24 C 1.52996 * 59.99925 * 107.47845 * 23 22 2 25 25 H 1.08998 * 109.46824 * 303.85283 * 1 2 3 26 26 H 1.08992 * 109.46912 * 63.84932 * 1 2 3 27 27 H 1.08999 * 109.47058 * 183.85546 * 1 2 3 28 28 H 1.09001 * 109.47109 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47009 * 299.99429 * 3 2 1 30 30 H 0.96704 * 116.99975 * 180.02562 * 6 4 3 31 31 H 0.96999 * 120.00716 * 354.46842 * 7 2 1 32 32 H 1.08999 * 109.47300 * 291.36040 * 11 8 7 33 33 H 1.08995 * 109.46782 * 51.35922 * 11 8 7 34 34 H 1.08999 * 109.47110 * 300.00209 * 12 11 8 35 35 H 1.08999 * 109.46956 * 59.99961 * 12 11 8 36 36 H 1.08999 * 109.47017 * 299.99972 * 13 12 11 37 37 H 1.09006 * 109.47372 * 59.99586 * 13 12 11 38 38 H 0.97001 * 119.99862 * 179.97438 * 17 16 14 39 39 H 1.08993 * 115.54943 * 207.30836 * 22 2 1 40 40 H 1.09001 * 117.49567 * 214.96961 * 23 22 2 41 41 H 1.08999 * 117.50041 * 359.97438 * 23 22 2 42 42 H 1.09000 * 117.49812 * 252.50439 * 24 23 22 43 43 H 1.09008 * 117.52232 * 107.48129 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5378 2.1529 1.2304 5 8 0.8427 1.5660 2.0255 6 8 1.8616 3.4382 1.4425 7 7 2.0184 -0.6907 -1.1960 8 16 3.6402 -0.7235 -1.5292 9 8 3.7310 -1.4271 -2.7603 10 8 4.0458 0.6349 -1.4301 11 6 4.3594 -1.7024 -0.1819 12 6 5.8306 -1.9891 -0.4888 13 6 6.4370 -2.8152 0.6472 14 6 7.8859 -3.0982 0.3447 15 1 8.3297 -2.7263 -0.5670 16 6 8.6447 -3.8326 1.2311 17 7 9.9093 -4.0791 0.9672 18 14 7.8768 -4.4764 2.8076 19 1 7.3048 -5.8252 2.5647 20 1 8.9158 -4.5626 3.8651 21 1 6.7993 -3.5534 3.2463 22 6 2.0401 -0.7212 1.2494 23 6 1.0058 -1.1358 2.2978 24 6 1.6677 -2.1959 1.4152 25 1 -0.3633 0.5725 0.8534 26 1 -0.3633 0.4529 -0.9224 27 1 -0.3633 -1.0253 0.0691 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.5162 3.8512 2.2458 31 1 1.3918 -1.1289 -1.7929 32 1 4.2850 -1.1451 0.7519 33 1 3.8178 -2.6435 -0.0875 34 1 5.9050 -2.5463 -1.4226 35 1 6.3721 -1.0478 -0.5832 36 1 6.3625 -2.2583 1.5812 37 1 5.8953 -3.7565 0.7413 38 1 10.4432 -4.5955 1.5910 39 1 3.0205 -0.4064 1.6065 40 1 1.3060 -1.0939 3.3449 41 1 -0.0381 -0.8945 2.0979 42 1 1.0591 -2.6522 0.6345 43 1 2.4035 -2.8515 1.8811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592329805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:06 Heat of formation + Delta-G solvation = -163.292106 kcal Electronic energy + Delta-G solvation = -26524.415677 eV Core-core repulsion = 22696.881364 eV Total energy + Delta-G solvation = -3827.534313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68144 -39.68810 -38.20165 -37.09094 -36.90137 -36.52906 -35.53358 -34.23496 -31.83231 -30.20633 -29.19891 -25.60449 -25.01004 -23.14520 -22.59675 -22.26863 -20.72490 -20.01724 -19.12149 -18.95765 -18.54349 -17.91799 -17.37365 -17.05019 -16.83732 -16.44466 -16.23952 -15.94715 -15.49977 -15.41219 -14.87804 -14.27450 -14.17791 -14.01026 -13.71313 -13.63844 -13.27936 -13.22102 -13.14229 -12.99328 -12.88840 -12.74421 -12.67685 -12.49318 -12.23299 -11.98573 -11.85713 -11.69601 -11.64536 -11.40893 -11.36982 -11.29025 -11.06216 -10.81875 -10.77536 -10.50581 -8.30073 -6.35563 -0.73283 1.31470 1.35713 1.38049 1.49410 1.64784 2.27146 2.35512 2.72251 2.96313 3.05329 3.20190 3.40588 3.67190 3.73435 3.86426 3.99186 4.15066 4.17258 4.35583 4.40628 4.41442 4.57885 4.59150 4.67671 4.82749 4.88438 4.92508 4.97293 4.99667 5.13920 5.22278 5.25468 5.35255 5.37245 5.43742 5.47088 5.62879 5.78204 6.12470 6.25661 6.72817 7.12488 7.29113 8.86976 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.004093 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.315653 B = 6838.682351 C = 7416.108191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.227 3.773 3 C -0.157 4.157 4 C 0.488 3.512 5 O -0.514 6.514 6 O -0.520 6.520 7 N -1.091 6.091 8 S 2.618 3.382 9 O -0.993 6.993 10 O -0.980 6.980 11 C -0.614 4.614 12 C -0.101 4.101 13 C -0.003 4.003 14 C -0.542 4.542 15 H 0.030 0.970 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.952 3.048 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.240 1.240 22 C -0.207 4.207 23 C -0.132 4.132 24 C -0.178 4.178 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.427 0.573 31 H 0.431 0.569 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.267 0.733 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.292 10.625 2.315 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.138 3.862 3 C -0.196 4.196 4 C 0.330 3.670 5 O -0.404 6.404 6 O -0.334 6.334 7 N -0.851 5.851 8 S 2.714 3.286 9 O -0.984 6.984 10 O -0.969 6.969 11 C -0.744 4.744 12 C -0.140 4.140 13 C -0.042 4.042 14 C -0.580 4.580 15 H 0.049 0.951 16 C -0.194 4.194 17 N -0.593 5.593 18 Si 0.775 3.225 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.163 1.163 22 C -0.227 4.227 23 C -0.169 4.169 24 C -0.215 4.215 25 H 0.112 0.888 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.148 0.852 29 H 0.142 0.858 30 H 0.288 0.712 31 H 0.269 0.731 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.663 10.730 1.560 27.860 hybrid contribution 0.276 -0.592 1.257 1.417 sum -25.387 10.138 2.817 27.481 Atomic orbital electron populations 1.22404 0.90599 1.04573 1.04354 1.19252 0.97046 0.87748 0.82126 1.22440 1.06135 0.95226 0.95815 1.23090 0.76674 0.79998 0.87221 1.90667 1.36246 1.66573 1.46869 1.84527 1.72418 1.26699 1.49732 1.55366 1.25182 1.69257 1.35318 1.04505 0.73868 0.74877 0.75303 1.93543 1.85907 1.76231 1.42673 1.93495 1.82545 1.33756 1.87129 1.30832 1.06669 1.17167 1.19771 1.21168 0.91156 1.01085 1.00624 1.19476 0.93556 0.96011 0.95112 1.21562 0.96297 1.33811 1.06368 0.95121 1.26069 0.95076 0.95899 1.02338 1.70080 1.08981 1.41386 1.38831 0.85635 0.78922 0.79778 0.78186 1.18913 1.21218 1.16303 1.22996 1.01178 0.99257 0.99267 1.22910 0.98332 1.00411 0.95255 1.23210 1.04117 0.90372 1.03751 0.88816 0.90884 0.90138 0.85232 0.85784 0.71153 0.73122 0.83339 0.82684 0.91834 0.91994 0.95228 0.95162 0.92459 0.88145 0.89627 0.87022 0.86911 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 6.96 71.99 0.50 -1.42 16 2 C 0.23 3.61 0.70 3.61 0.00 3.62 16 3 C -0.16 -2.85 4.15 29.85 0.12 -2.73 16 4 C 0.49 8.39 7.74 71.24 0.55 8.94 16 5 O -0.51 -9.63 11.93 21.99 0.26 -9.36 16 6 O -0.52 -7.43 13.42 -51.41 -0.69 -8.12 16 7 N -1.09 -18.11 5.33 -152.21 -0.81 -18.92 16 8 S 2.62 67.02 5.39 -56.49 -0.30 66.72 16 9 O -0.99 -32.47 18.08 -127.65 -2.31 -34.78 16 10 O -0.98 -28.97 14.36 -127.65 -1.83 -30.81 16 11 C -0.61 -16.13 4.46 71.98 0.32 -15.81 16 12 C -0.10 -3.81 5.16 30.59 0.16 -3.65 16 13 C 0.00 -0.14 4.04 29.85 0.12 -0.01 16 14 C -0.54 -31.32 9.66 25.60 0.25 -31.07 16 15 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 16 C 0.00 0.17 5.47 84.65 0.46 0.63 16 17 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 18 Si 0.95 43.24 27.47 68.60 1.88 45.13 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 22 C -0.21 -3.58 2.24 -10.79 -0.02 -3.61 16 23 C -0.13 -2.09 7.94 30.59 0.24 -1.84 16 24 C -0.18 -2.72 8.45 30.59 0.26 -2.46 16 25 H 0.09 1.29 4.71 -2.39 -0.01 1.28 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 0.77 6.82 -2.39 -0.02 0.75 16 28 H 0.13 2.84 5.37 -2.39 -0.01 2.83 16 29 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.43 2.26 9.10 -74.05 -0.67 1.59 16 31 H 0.43 5.18 8.57 -96.75 -0.83 4.35 16 32 H 0.15 3.40 5.45 -2.39 -0.01 3.39 16 33 H 0.16 3.34 7.33 -2.39 -0.02 3.32 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 37 H 0.03 1.27 7.57 -2.38 -0.02 1.25 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.10 1.92 6.21 -2.39 -0.01 1.90 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.11 1.58 5.83 -2.39 -0.01 1.57 16 42 H 0.11 1.37 7.69 -2.39 -0.02 1.35 16 43 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -78.32 344.66 -1.04 -79.36 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.50 Total: 19.98 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 2.97 Total: -49.41 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -0.51 Total: -78.71 kcal Atomic # 8 Polarization: -78.50 SS G_CDS: -4.57 Total: -83.07 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 16 Polarization: 67.02 SS G_CDS: -0.30 Total: 66.72 kcal Total: -78.32 -1.04 -79.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592329805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.932 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds