Wall clock time and date at job start Tue Mar 31 2020 12:17:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52989 * 1
3 3 C 1.53001 * 110.83549 * 2 1
4 4 C 1.54698 * 110.94873 * 236.27112 * 2 1 3
5 5 O 1.43842 * 102.77387 * 267.19131 * 4 2 1
6 6 C 1.36007 * 109.30529 * 332.14009 * 5 4 2
7 7 C 1.39599 * 129.71779 * 198.46933 * 6 5 4
8 8 C 1.37452 * 120.43785 * 180.99871 * 7 6 5
9 9 C 1.39822 * 120.19306 * 359.97438 * 8 7 6
10 10 C 1.47498 * 120.27367 * 179.80731 * 9 8 7
11 11 O 1.21626 * 119.99880 * 151.00260 * 10 9 8
12 12 N 1.34781 * 119.99941 * 331.01284 * 10 9 8
13 13 C 1.36902 * 119.99474 * 186.22104 * 12 10 9
14 14 H 1.07994 * 120.00375 * 353.61202 * 13 12 10
15 15 C 1.39023 * 119.99549 * 173.61458 * 13 12 10
16 16 N 1.31389 * 119.99892 * 31.97464 * 15 13 12
17 17 Si 1.86794 * 120.00024 * 211.97052 * 15 13 12
18 18 H 1.48506 * 109.46940 * 94.95251 * 17 15 13
19 19 H 1.48504 * 109.47436 * 214.95388 * 17 15 13
20 20 H 1.48503 * 109.47318 * 334.95654 * 17 15 13
21 21 C 1.46498 * 119.99969 * 6.21555 * 12 10 9
22 22 C 1.50697 * 109.47120 * 98.33495 * 21 12 10
23 23 O 1.20831 * 119.99842 * 359.97438 * 22 21 12
24 24 O 1.34227 * 119.99999 * 180.02562 * 22 21 12
25 25 C 1.39871 * 119.45537 * 359.83582 * 9 8 7
26 26 C 1.37294 * 119.85686 * 359.97438 * 25 9 8
27 27 H 1.09001 * 109.47278 * 59.30209 * 1 2 3
28 28 H 1.09000 * 109.47524 * 179.30301 * 1 2 3
29 29 H 1.08994 * 109.47577 * 299.30134 * 1 2 3
30 30 H 1.08997 * 109.47412 * 60.69706 * 3 2 1
31 31 H 1.09007 * 109.47283 * 180.69978 * 3 2 1
32 32 H 1.09007 * 109.46835 * 300.69379 * 3 2 1
33 33 H 1.09002 * 110.74192 * 25.53799 * 4 2 1
34 34 H 1.08996 * 110.74399 * 148.86727 * 4 2 1
35 35 H 1.07997 * 119.78228 * 1.01947 * 7 6 5
36 36 H 1.07994 * 119.90712 * 179.97438 * 8 7 6
37 37 H 0.97001 * 119.99413 * 180.02562 * 16 15 13
38 38 H 1.08999 * 109.46866 * 218.33191 * 21 12 10
39 39 H 1.09004 * 109.47352 * 338.33433 * 21 12 10
40 40 H 0.96698 * 116.99985 * 180.02562 * 24 22 21
41 41 H 1.08001 * 120.07577 * 180.02562 * 25 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0741 1.4300 0.0000
4 6 2.0830 -0.8022 -1.2015
5 8 2.2609 -2.1188 -0.6501
6 6 2.4918 -2.0190 0.6865
7 6 3.0505 -2.9471 1.5669
8 6 3.1780 -2.6504 2.9030
9 6 2.7486 -1.4130 3.3925
10 6 2.8806 -1.0943 4.8266
11 8 3.0233 0.0599 5.1824
12 7 2.8435 -2.0823 5.7427
13 6 2.8377 -1.7780 7.0775
14 1 2.9668 -0.7551 7.3988
15 6 2.6657 -2.7860 8.0193
16 7 3.1168 -3.9959 7.7765
17 14 1.7935 -2.4203 9.6301
18 1 0.3569 -2.7760 9.5070
19 1 2.4097 -3.2196 10.7195
20 1 1.9202 -0.9745 9.9445
21 6 2.8091 -3.4815 5.3101
22 6 4.1987 -4.0611 5.3733
23 8 5.1230 -3.3755 5.7416
24 8 4.4097 -5.3386 5.0196
25 6 2.1922 -0.4802 2.5113
26 6 2.0732 -0.7858 1.1781
27 1 -0.3634 0.5246 -0.8837
28 1 -0.3634 -1.0276 -0.0125
29 1 -0.3634 0.5029 0.8961
30 1 1.7333 1.9485 0.8961
31 1 3.1638 1.4041 -0.0126
32 1 1.7130 1.9561 -0.8838
33 1 1.3620 -0.8195 -2.0189
34 1 3.0358 -0.3909 -1.5346
35 1 3.3851 -3.9046 1.1958
36 1 3.6111 -3.3749 3.5766
37 1 2.9964 -4.6993 8.4335
38 1 2.1487 -4.0485 5.9662
39 1 2.4388 -3.5363 4.2863
40 1 5.3179 -5.6658 5.0772
41 1 1.8576 0.4787 2.8786
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001593960646.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:19
Heat of formation + Delta-G solvation = -85.759530 kcal
Electronic energy + Delta-G solvation = -27698.083440 eV
Core-core repulsion = 23738.467240 eV
Total energy + Delta-G solvation = -3959.616200 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.130 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.34499 -39.87597 -38.39769 -36.60650 -35.36350 -35.16445 -34.59009 -32.10411
-30.23006 -29.85112 -27.79533 -27.49079 -26.60825 -25.29112 -23.05411 -22.43397
-21.15440 -19.92893 -19.22881 -17.56283 -17.24133 -17.10572 -16.56161 -16.11297
-15.68314 -15.40148 -15.30621 -14.68459 -14.34141 -14.06567 -14.02985 -13.69784
-13.57351 -13.29653 -13.05107 -12.85350 -12.68851 -12.49293 -12.09108 -11.97950
-11.80272 -11.52701 -11.51923 -11.35887 -11.02293 -10.93294 -10.61334 -10.52614
-10.42201 -10.33627 -10.16584 -9.66856 -8.99603 -8.68927 -8.66940 -8.15234
-7.88644 -6.66363 -3.86863 1.27884 1.54492 3.07664 3.20164 3.23616
3.27335 3.31915 3.50500 3.89002 4.04813 4.20848 4.29841 4.43320
4.69094 4.77521 4.90408 5.01327 5.13423 5.25865 5.28560 5.36001
5.47362 5.48549 5.57622 5.69345 5.69568 5.74758 5.79781 5.81936
6.03818 6.13002 6.22082 6.34793 6.46414 6.55067 6.58538 6.68034
6.75275 7.30031 7.40615 7.44099 7.88037 8.26177 8.94442 8.97566
9.18564 9.75365 10.41837
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.018512 B = 0.004230 C = 0.003710
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1512.168670 B = 6618.190058 C = 7546.057793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.051 4.051
3 C -0.136 4.136
4 C 0.059 3.941
5 O -0.305 6.305
6 C 0.105 3.895
7 C -0.139 4.139
8 C -0.092 4.092
9 C -0.122 4.122
10 C 0.485 3.515
11 O -0.577 6.577
12 N -0.414 5.414
13 C -0.302 4.302
14 H 0.116 0.884
15 C 0.036 3.964
16 N -0.865 5.865
17 Si 0.924 3.076
18 H -0.275 1.275
19 H -0.285 1.285
20 H -0.266 1.266
21 C 0.103 3.897
22 C 0.490 3.510
23 O -0.501 6.501
24 O -0.532 6.532
25 C -0.021 4.021
26 C -0.170 4.170
27 H 0.060 0.940
28 H 0.060 0.940
29 H 0.065 0.935
30 H 0.066 0.934
31 H 0.060 0.940
32 H 0.060 0.940
33 H 0.103 0.897
34 H 0.076 0.924
35 H 0.130 0.870
36 H 0.147 0.853
37 H 0.275 0.725
38 H 0.132 0.868
39 H 0.108 0.892
40 H 0.393 0.607
41 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.284 0.079 -15.256 15.846
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.051 4.051
3 C -0.194 4.194
4 C -0.017 4.017
5 O -0.219 6.219
6 C 0.059 3.941
7 C -0.157 4.157
8 C -0.111 4.111
9 C -0.125 4.125
10 C 0.276 3.724
11 O -0.462 6.462
12 N -0.131 5.131
13 C -0.428 4.428
14 H 0.134 0.866
15 C -0.168 4.168
16 N -0.504 5.504
17 Si 0.750 3.250
18 H -0.201 1.201
19 H -0.211 1.211
20 H -0.190 1.190
21 C -0.022 4.022
22 C 0.330 3.670
23 O -0.386 6.386
24 O -0.343 6.343
25 C -0.041 4.041
26 C -0.171 4.171
27 H 0.079 0.921
28 H 0.079 0.921
29 H 0.084 0.916
30 H 0.085 0.915
31 H 0.079 0.921
32 H 0.079 0.921
33 H 0.122 0.878
34 H 0.094 0.906
35 H 0.148 0.852
36 H 0.164 0.836
37 H 0.086 0.914
38 H 0.150 0.850
39 H 0.125 0.875
40 H 0.250 0.750
41 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -4.356 0.634 -14.995 15.628
hybrid contribution 0.431 -0.325 1.015 1.150
sum -3.924 0.309 -13.980 14.524
Atomic orbital electron populations
1.21779 0.92468 1.02509 1.02368 1.20759 0.96695 0.95955 0.91710
1.21776 1.01294 0.93796 1.02502 1.23968 1.01214 0.80488 0.95988
1.86766 1.86830 1.29506 1.18755 1.19684 0.95820 0.94936 0.83641
1.20132 1.03813 1.00003 0.91783 1.21847 0.98202 0.96480 0.94543
1.20091 1.02852 0.94416 0.95165 1.17556 0.85044 0.85706 0.84089
1.90624 1.55224 1.19717 1.80645 1.43455 1.60893 1.02390 1.06382
1.19802 1.47043 0.96406 0.79578 0.86628 1.25260 0.96521 0.94730
1.00325 1.69898 1.39180 1.03594 1.37710 0.85936 0.79638 0.79221
0.80203 1.20065 1.21056 1.19015 1.21927 0.92075 0.85454 1.02784
1.23600 0.92429 0.78659 0.72295 1.90640 1.44913 1.61050 1.41987
1.84530 1.37009 1.31166 1.81610 1.20217 0.95069 0.98816 0.89963
1.20511 1.05389 0.96405 0.94799 0.92051 0.92089 0.91641 0.91486
0.92050 0.92113 0.87849 0.90578 0.85238 0.83575 0.91427 0.85038
0.87471 0.74988 0.85041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.33 8.61 37.15 0.32 -1.01 16
2 C -0.05 -0.58 1.03 -154.29 -0.16 -0.73 16
3 C -0.14 -1.35 8.53 37.16 0.32 -1.03 16
4 C 0.06 0.60 7.09 38.05 0.27 0.87 16
5 O -0.30 -4.21 11.10 -19.76 -0.22 -4.43 16
6 C 0.10 1.61 7.05 -38.72 -0.27 1.34 16
7 C -0.14 -2.18 10.05 -39.36 -0.40 -2.57 16
8 C -0.09 -1.67 7.47 -39.28 -0.29 -1.97 16
9 C -0.12 -2.48 5.60 -104.92 -0.59 -3.07 16
10 C 0.49 12.17 7.42 -12.48 -0.09 12.08 16
11 O -0.58 -16.22 16.30 5.25 0.09 -16.13 16
12 N -0.41 -10.56 2.20 -117.29 -0.26 -10.81 16
13 C -0.30 -8.28 9.11 -15.00 -0.14 -8.42 16
14 H 0.12 3.37 7.34 -52.49 -0.39 2.99 16
15 C 0.04 0.91 4.97 -17.45 -0.09 0.83 16
16 N -0.87 -21.88 9.06 55.50 0.50 -21.38 16
17 Si 0.92 20.05 29.65 -169.99 -5.04 15.00 16
18 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16
19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16
21 C 0.10 2.27 4.80 -5.20 -0.02 2.25 16
22 C 0.49 10.88 4.51 36.00 0.16 11.05 16
23 O -0.50 -13.14 16.90 -18.75 -0.32 -13.46 16
24 O -0.53 -9.42 13.42 -39.25 -0.53 -9.95 16
25 C -0.02 -0.38 9.47 -39.31 -0.37 -0.75 16
26 C -0.17 -2.57 5.03 -104.13 -0.52 -3.10 16
27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
31 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16
32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
33 H 0.10 0.80 7.92 -51.93 -0.41 0.38 16
34 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16
35 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16
36 H 0.15 2.72 3.08 -52.49 -0.16 2.56 16
37 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16
38 H 0.13 2.98 6.11 -51.93 -0.32 2.67 16
39 H 0.11 2.04 4.00 -52.26 -0.21 1.83 16
40 H 0.39 5.32 9.10 45.56 0.41 5.73 16
41 H 0.13 2.32 7.92 -52.49 -0.42 1.91 16
LS Contribution 339.28 15.07 5.11 5.11
Total: -1.00 -33.42 339.28 -6.53 -39.95
By element:
Atomic # 1 Polarization: 14.33 SS G_CDS: -3.99 Total: 10.35 kcal
Atomic # 6 Polarization: 7.63 SS G_CDS: -1.88 Total: 5.75 kcal
Atomic # 7 Polarization: -32.44 SS G_CDS: 0.24 Total: -32.19 kcal
Atomic # 8 Polarization: -42.99 SS G_CDS: -0.98 Total: -43.97 kcal
Atomic # 14 Polarization: 20.05 SS G_CDS: -5.04 Total: 15.00 kcal
Total LS contribution 5.11 Total: 5.11 kcal
Total: -33.42 -6.53 -39.95 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001593960646.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.808 kcal
(2) G-P(sol) polarization free energy of solvation -33.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.233 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.760 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds