Wall clock time and date at job start Tue Mar 31 2020 12:17:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52989 * 1
3 3 C 1.53001 * 110.83549 * 2 1
4 4 C 1.54698 * 110.94873 * 236.27112 * 2 1 3
5 5 O 1.43842 * 102.77387 * 267.19131 * 4 2 1
6 6 C 1.36007 * 109.30529 * 332.14009 * 5 4 2
7 7 C 1.39599 * 129.71779 * 198.46933 * 6 5 4
8 8 C 1.37452 * 120.43785 * 180.99871 * 7 6 5
9 9 C 1.39822 * 120.19306 * 359.97438 * 8 7 6
10 10 C 1.47498 * 120.27367 * 179.80731 * 9 8 7
11 11 O 1.21626 * 119.99880 * 151.00260 * 10 9 8
12 12 N 1.34781 * 119.99941 * 331.01284 * 10 9 8
13 13 C 1.36902 * 119.99474 * 186.22104 * 12 10 9
14 14 H 1.07994 * 120.00375 * 353.61202 * 13 12 10
15 15 C 1.39023 * 119.99549 * 173.61458 * 13 12 10
16 16 N 1.31389 * 119.99892 * 31.97464 * 15 13 12
17 17 Si 1.86794 * 120.00024 * 211.97052 * 15 13 12
18 18 H 1.48506 * 109.46940 * 94.95251 * 17 15 13
19 19 H 1.48504 * 109.47436 * 214.95388 * 17 15 13
20 20 H 1.48503 * 109.47318 * 334.95654 * 17 15 13
21 21 C 1.46498 * 119.99969 * 6.21555 * 12 10 9
22 22 C 1.50697 * 109.47120 * 98.33495 * 21 12 10
23 23 O 1.20831 * 119.99842 * 359.97438 * 22 21 12
24 24 O 1.34227 * 119.99999 * 180.02562 * 22 21 12
25 25 C 1.39871 * 119.45537 * 359.83582 * 9 8 7
26 26 C 1.37294 * 119.85686 * 359.97438 * 25 9 8
27 27 H 1.09001 * 109.47278 * 59.30209 * 1 2 3
28 28 H 1.09000 * 109.47524 * 179.30301 * 1 2 3
29 29 H 1.08994 * 109.47577 * 299.30134 * 1 2 3
30 30 H 1.08997 * 109.47412 * 60.69706 * 3 2 1
31 31 H 1.09007 * 109.47283 * 180.69978 * 3 2 1
32 32 H 1.09007 * 109.46835 * 300.69379 * 3 2 1
33 33 H 1.09002 * 110.74192 * 25.53799 * 4 2 1
34 34 H 1.08996 * 110.74399 * 148.86727 * 4 2 1
35 35 H 1.07997 * 119.78228 * 1.01947 * 7 6 5
36 36 H 1.07994 * 119.90712 * 179.97438 * 8 7 6
37 37 H 0.97001 * 119.99413 * 180.02562 * 16 15 13
38 38 H 1.08999 * 109.46866 * 218.33191 * 21 12 10
39 39 H 1.09004 * 109.47352 * 338.33433 * 21 12 10
40 40 H 0.96698 * 116.99985 * 180.02562 * 24 22 21
41 41 H 1.08001 * 120.07577 * 180.02562 * 25 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0741 1.4300 0.0000
4 6 2.0830 -0.8022 -1.2015
5 8 2.2609 -2.1188 -0.6501
6 6 2.4918 -2.0190 0.6865
7 6 3.0505 -2.9471 1.5669
8 6 3.1780 -2.6504 2.9030
9 6 2.7486 -1.4130 3.3925
10 6 2.8806 -1.0943 4.8266
11 8 3.0233 0.0599 5.1824
12 7 2.8435 -2.0823 5.7427
13 6 2.8377 -1.7780 7.0775
14 1 2.9668 -0.7551 7.3988
15 6 2.6657 -2.7860 8.0193
16 7 3.1168 -3.9959 7.7765
17 14 1.7935 -2.4203 9.6301
18 1 0.3569 -2.7760 9.5070
19 1 2.4097 -3.2196 10.7195
20 1 1.9202 -0.9745 9.9445
21 6 2.8091 -3.4815 5.3101
22 6 4.1987 -4.0611 5.3733
23 8 5.1230 -3.3755 5.7416
24 8 4.4097 -5.3386 5.0196
25 6 2.1922 -0.4802 2.5113
26 6 2.0732 -0.7858 1.1781
27 1 -0.3634 0.5246 -0.8837
28 1 -0.3634 -1.0276 -0.0125
29 1 -0.3634 0.5029 0.8961
30 1 1.7333 1.9485 0.8961
31 1 3.1638 1.4041 -0.0126
32 1 1.7130 1.9561 -0.8838
33 1 1.3620 -0.8195 -2.0189
34 1 3.0358 -0.3909 -1.5346
35 1 3.3851 -3.9046 1.1958
36 1 3.6111 -3.3749 3.5766
37 1 2.9964 -4.6993 8.4335
38 1 2.1487 -4.0485 5.9662
39 1 2.4388 -3.5363 4.2863
40 1 5.3179 -5.6658 5.0772
41 1 1.8576 0.4787 2.8786
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001593960646.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:18
Heat of formation + Delta-G solvation = -108.119526 kcal
Electronic energy + Delta-G solvation = -27699.053042 eV
Core-core repulsion = 23738.467240 eV
Total energy + Delta-G solvation = -3960.585802 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.130 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.53127 -41.55859 -40.13357 -38.06200 -37.14645 -36.47523 -36.12384 -34.00396
-31.57999 -31.31477 -29.51901 -28.26207 -27.53791 -27.08533 -24.48309 -23.79874
-22.86488 -21.35595 -20.54387 -19.17505 -18.90868 -18.78273 -17.91372 -17.42033
-17.21156 -17.02278 -16.79475 -16.25597 -16.07987 -15.46241 -15.32332 -15.21020
-14.82746 -14.55011 -14.39298 -14.14806 -13.86783 -13.80648 -13.74369 -13.55710
-13.15198 -12.92913 -12.76943 -12.46553 -12.36483 -12.30058 -12.16302 -12.15643
-11.89866 -11.60795 -11.55483 -11.48560 -10.91601 -10.61353 -10.15913 -9.94851
-9.20544 -8.61152 -5.91563 -0.12983 0.22102 1.33562 1.40402 1.53192
1.55389 1.79407 2.14601 2.27001 2.41348 2.63662 2.77815 3.14127
3.26904 3.52031 3.70877 3.78850 3.95894 4.03670 4.08457 4.18298
4.33074 4.44376 4.57476 4.62486 4.70617 4.76010 4.77379 4.83380
4.93050 4.94564 5.07361 5.10147 5.20489 5.29832 5.33096 5.35563
5.39930 5.41563 5.87205 5.90020 6.11084 6.30012 6.99431 7.19200
7.35248 7.82870 8.46081
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.018512 B = 0.004230 C = 0.003710
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1512.168670 B = 6618.190058 C = 7546.057793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.051 4.051
3 C -0.136 4.136
4 C 0.055 3.945
5 O -0.306 6.306
6 C 0.115 3.885
7 C -0.133 4.133
8 C -0.094 4.094
9 C -0.151 4.151
10 C 0.473 3.527
11 O -0.626 6.626
12 N -0.425 5.425
13 C -0.349 4.349
14 H 0.080 0.920
15 C 0.012 3.988
16 N -0.873 5.873
17 Si 0.989 3.011
18 H -0.259 1.259
19 H -0.274 1.274
20 H -0.278 1.278
21 C 0.103 3.897
22 C 0.500 3.500
23 O -0.548 6.548
24 O -0.512 6.512
25 C -0.027 4.027
26 C -0.167 4.167
27 H 0.093 0.907
28 H 0.053 0.947
29 H 0.054 0.946
30 H 0.053 0.947
31 H 0.054 0.946
32 H 0.092 0.908
33 H 0.140 0.860
34 H 0.092 0.908
35 H 0.160 0.840
36 H 0.140 0.860
37 H 0.283 0.717
38 H 0.125 0.875
39 H 0.139 0.861
40 H 0.416 0.584
41 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.389 -1.266 -18.137 18.963
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.051 4.051
3 C -0.193 4.193
4 C -0.019 4.019
5 O -0.220 6.220
6 C 0.069 3.931
7 C -0.152 4.152
8 C -0.113 4.113
9 C -0.155 4.155
10 C 0.266 3.734
11 O -0.515 6.515
12 N -0.141 5.141
13 C -0.476 4.476
14 H 0.098 0.902
15 C -0.192 4.192
16 N -0.510 5.510
17 Si 0.812 3.188
18 H -0.184 1.184
19 H -0.199 1.199
20 H -0.203 1.203
21 C -0.022 4.022
22 C 0.343 3.657
23 O -0.437 6.437
24 O -0.325 6.325
25 C -0.046 4.046
26 C -0.168 4.168
27 H 0.112 0.888
28 H 0.072 0.928
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.111 0.889
33 H 0.157 0.843
34 H 0.110 0.890
35 H 0.178 0.822
36 H 0.158 0.842
37 H 0.093 0.907
38 H 0.143 0.857
39 H 0.155 0.845
40 H 0.276 0.724
41 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -5.460 -0.788 -17.912 18.742
hybrid contribution 0.800 0.049 1.709 1.888
sum -4.660 -0.738 -16.203 16.876
Atomic orbital electron populations
1.21793 0.91216 1.02450 1.03489 1.20941 0.97664 0.96376 0.90162
1.21785 1.00877 0.93122 1.03482 1.24348 1.03105 0.78434 0.95984
1.86779 1.86199 1.31681 1.17354 1.19843 0.94180 0.94432 0.84653
1.20330 1.02945 1.01267 0.90608 1.21679 0.98521 0.95346 0.95723
1.19813 1.06307 0.96611 0.92749 1.18363 0.83888 0.85095 0.86059
1.90553 1.57381 1.21582 1.82018 1.43551 1.60797 1.03850 1.05923
1.19605 1.51056 0.95543 0.81391 0.90165 1.25974 0.95802 0.94423
1.03010 1.69929 1.38340 1.03967 1.38806 0.85010 0.79104 0.78306
0.76399 1.18360 1.19923 1.20260 1.22039 0.92203 0.83665 1.04245
1.23488 0.91806 0.79370 0.71073 1.90628 1.46231 1.62503 1.44383
1.84449 1.38905 1.28620 1.80507 1.20151 0.95404 0.98011 0.91069
1.20879 1.04094 0.97322 0.94517 0.88828 0.92757 0.92686 0.92743
0.92733 0.88900 0.84264 0.89035 0.82225 0.84247 0.90679 0.85748
0.84463 0.72401 0.86047
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.23 8.61 71.98 0.62 -1.61 16
2 C -0.05 -1.01 1.03 -52.04 -0.05 -1.06 16
3 C -0.14 -2.35 8.53 71.98 0.61 -1.74 16
4 C 0.06 0.89 7.09 72.56 0.51 1.40 16
5 O -0.31 -7.24 11.10 -93.63 -1.04 -8.28 16
6 C 0.12 3.25 7.05 22.83 0.16 3.41 16
7 C -0.13 -3.90 10.05 22.41 0.23 -3.68 16
8 C -0.09 -3.40 7.47 22.47 0.17 -3.24 16
9 C -0.15 -6.43 5.60 -20.06 -0.11 -6.55 16
10 C 0.47 25.41 7.42 86.68 0.64 26.05 16
11 O -0.63 -38.21 16.30 -4.11 -0.07 -38.28 16
12 N -0.42 -22.89 2.20 -643.24 -1.42 -24.31 16
13 C -0.35 -20.38 9.11 84.09 0.77 -19.61 16
14 H 0.08 5.11 7.34 -2.91 -0.02 5.09 16
15 C 0.01 0.61 4.97 84.95 0.42 1.04 16
16 N -0.87 -44.49 9.06 21.68 0.20 -44.29 16
17 Si 0.99 41.94 29.65 68.60 2.03 43.98 16
18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16
19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16
21 C 0.10 4.64 4.80 85.63 0.41 5.06 16
22 C 0.50 22.41 4.51 71.23 0.32 22.73 16
23 O -0.55 -29.63 16.90 21.95 0.37 -29.26 16
24 O -0.51 -17.40 13.42 -51.39 -0.69 -18.09 16
25 C -0.03 -0.99 9.47 22.44 0.21 -0.78 16
26 C -0.17 -4.84 5.03 -19.54 -0.10 -4.94 16
27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
31 H 0.05 1.02 8.13 -2.38 -0.02 1.00 16
32 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16
33 H 0.14 1.32 7.92 -2.39 -0.02 1.30 16
34 H 0.09 1.26 7.91 -2.39 -0.02 1.24 16
35 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16
36 H 0.14 5.19 3.08 -2.91 -0.01 5.18 16
37 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16
38 H 0.12 5.74 6.11 -2.39 -0.01 5.72 16
39 H 0.14 5.28 4.00 -2.70 -0.01 5.27 16
40 H 0.42 10.42 9.10 -74.06 -0.67 9.75 16
41 H 0.12 4.59 7.92 -2.91 -0.02 4.57 16
Total: -1.00 -77.76 339.28 4.62 -73.13
By element:
Atomic # 1 Polarization: 28.47 SS G_CDS: 0.42 Total: 28.89 kcal
Atomic # 6 Polarization: 11.68 SS G_CDS: 4.81 Total: 16.50 kcal
Atomic # 7 Polarization: -67.38 SS G_CDS: -1.22 Total: -68.60 kcal
Atomic # 8 Polarization: -92.47 SS G_CDS: -1.42 Total: -93.90 kcal
Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.98 kcal
Total: -77.76 4.62 -73.13 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001593960646.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.987 kcal
(2) G-P(sol) polarization free energy of solvation -77.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds