Wall clock time and date at job start Tue Mar 31 2020 14:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46980 * 2 1 4 4 O 1.21239 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.47295 * 119.99691 * 180.02562 * 3 2 1 6 6 C 1.39887 * 120.02113 * 359.71769 * 5 3 2 7 7 C 1.37683 * 119.97440 * 179.80943 * 6 5 3 8 8 C 1.39694 * 120.02218 * 0.45304 * 7 6 5 9 9 C 1.47855 * 119.97878 * 179.76259 * 8 7 6 10 10 O 1.21584 * 120.00321 * 151.11620 * 9 8 7 11 11 N 1.34778 * 119.99546 * 331.11422 * 9 8 7 12 12 C 1.36655 * 119.99646 * 186.91751 * 11 9 8 13 13 H 1.08006 * 119.99854 * 217.11177 * 12 11 9 14 14 C 1.39202 * 120.00359 * 37.11085 * 12 11 9 15 15 N 1.31259 * 119.99883 * 25.98558 * 14 12 11 16 16 Si 1.86803 * 120.00162 * 205.98990 * 14 12 11 17 17 H 1.48503 * 109.47101 * 89.99931 * 16 14 12 18 18 H 1.48499 * 109.46742 * 209.99948 * 16 14 12 19 19 H 1.48497 * 109.47107 * 329.99862 * 16 14 12 20 20 C 1.46497 * 120.00201 * 6.92326 * 11 9 8 21 21 C 1.52999 * 109.47461 * 99.63603 * 20 11 9 22 22 C 1.50697 * 109.47207 * 179.97438 * 21 20 11 23 23 O 1.20829 * 119.99958 * 0.02562 * 22 21 20 24 24 O 1.34226 * 120.00045 * 179.97438 * 22 21 20 25 25 C 1.39701 * 120.04606 * 359.78283 * 8 7 6 26 26 C 1.37685 * 120.02189 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47069 * 300.00692 * 1 2 3 29 29 H 1.08999 * 109.46781 * 59.99843 * 1 2 3 30 30 H 1.08999 * 109.46781 * 120.00157 * 2 1 3 31 31 H 1.09000 * 109.46848 * 240.00060 * 2 1 3 32 32 H 1.07995 * 120.00638 * 0.02562 * 6 5 3 33 33 H 1.07999 * 119.98780 * 180.20796 * 7 6 5 34 34 H 0.97004 * 120.00215 * 184.98292 * 15 14 12 35 35 H 1.09005 * 109.46709 * 219.63764 * 20 11 9 36 36 H 1.08997 * 109.47141 * 339.62999 * 20 11 9 37 37 H 1.08997 * 109.46661 * 299.99843 * 21 20 11 38 38 H 1.08997 * 109.47121 * 60.00022 * 21 20 11 39 39 H 0.96704 * 117.00196 * 179.97438 * 24 22 21 40 40 H 1.08002 * 119.98844 * 179.97438 * 25 8 7 41 41 H 1.07995 * 120.01112 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2445 2.3423 -0.0005 5 6 3.4805 1.6899 -0.0006 6 6 4.3899 0.6270 0.0049 7 6 5.7433 0.8796 0.0004 8 6 6.2085 2.1969 -0.0001 9 6 7.6621 2.4670 0.0004 10 8 8.0916 3.4843 -0.5085 11 7 8.5111 1.5856 0.5650 12 6 9.8354 1.8980 0.6923 13 1 10.5860 1.1334 0.5565 14 6 10.2169 3.2016 0.9970 15 7 9.3936 3.9917 1.6458 16 14 11.9004 3.8266 0.4825 17 1 11.8111 4.4331 -0.8701 18 1 12.3669 4.8486 1.4536 19 1 12.8614 2.6948 0.4550 20 6 8.0143 0.2927 1.0421 21 6 8.3217 -0.7870 0.0025 22 6 7.8112 -2.1171 0.4937 23 8 7.2579 -2.1936 1.5651 24 8 7.9703 -3.2166 -0.2596 25 6 5.3011 3.2591 -0.0005 26 6 3.9472 3.0086 0.0000 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 4.0303 -0.3913 0.0090 33 1 6.4456 0.0591 0.0011 34 1 9.6294 4.9207 1.7949 35 1 8.5031 0.0405 1.9833 36 1 6.9370 0.3520 1.1968 37 1 7.8329 -0.5348 -0.9385 38 1 9.3990 -0.8463 -0.1521 39 1 7.6267 -4.0470 0.0976 40 1 5.6617 4.2771 -0.0004 41 1 3.2459 3.8299 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594718465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:37 Heat of formation + Delta-G solvation = -100.520022 kcal Electronic energy + Delta-G solvation = -26869.300576 eV Core-core repulsion = 22909.044313 eV Total energy + Delta-G solvation = -3960.256263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.49986 -39.94094 -39.05073 -37.19709 -36.19153 -34.96647 -33.11768 -32.73303 -30.88571 -30.67904 -30.30135 -26.14078 -25.23096 -24.21181 -22.88328 -22.07549 -20.92453 -19.97485 -19.48463 -18.09152 -17.38924 -16.89400 -16.67985 -16.09240 -15.57955 -15.53281 -15.50765 -14.88904 -14.46292 -14.33652 -13.93435 -13.71013 -13.49798 -13.32978 -13.08583 -12.91150 -12.50796 -12.37431 -12.13349 -11.90956 -11.83241 -11.58879 -11.52168 -11.41865 -11.31231 -10.96264 -10.94634 -10.73049 -10.51860 -10.38676 -10.17933 -9.63975 -8.98939 -8.68335 -8.57925 -8.30366 -7.44026 -6.35170 -3.99727 0.71377 1.62328 2.26031 2.42888 3.05974 3.25547 3.32940 3.36903 3.78582 3.99860 4.13295 4.47839 4.76095 4.80573 4.96717 4.97170 5.00874 5.09026 5.15446 5.23666 5.28646 5.38568 5.53257 5.60320 5.64860 5.74858 5.76057 5.76766 5.80901 6.01374 6.04948 6.12675 6.22690 6.41353 6.46494 6.57782 6.61962 6.78277 7.10516 7.41922 7.56468 7.91714 7.99740 8.78018 8.94804 9.39570 10.02779 10.72519 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.004447 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.862251 B = 6295.486598 C = 8318.023992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.171 4.171 3 C 0.398 3.602 4 O -0.461 6.461 5 C -0.181 4.181 6 C -0.079 4.079 7 C -0.151 4.151 8 C -0.057 4.057 9 C 0.497 3.503 10 O -0.533 6.533 11 N -0.430 5.430 12 C -0.353 4.353 13 H 0.088 0.912 14 C 0.077 3.923 15 N -0.815 5.815 16 Si 0.910 3.090 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.076 3.924 21 C -0.138 4.138 22 C 0.481 3.519 23 O -0.514 6.514 24 O -0.520 6.520 25 C -0.088 4.088 26 C -0.067 4.067 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.270 0.730 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.405 0.595 40 H 0.136 0.864 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -12.471 -3.081 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.277 3.723 4 O -0.337 6.337 5 C -0.182 4.182 6 C -0.097 4.097 7 C -0.169 4.169 8 C -0.061 4.061 9 C 0.286 3.714 10 O -0.413 6.413 11 N -0.150 5.150 12 C -0.479 4.479 13 H 0.105 0.895 14 C -0.136 4.136 15 N -0.447 5.447 16 Si 0.736 3.264 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.048 4.048 21 C -0.177 4.177 22 C 0.323 3.677 23 O -0.402 6.402 24 O -0.331 6.331 25 C -0.107 4.107 26 C -0.085 4.085 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.264 0.736 40 H 0.154 0.846 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.695 -10.931 -3.040 14.924 hybrid contribution 0.694 -0.324 0.155 0.782 sum -9.001 -11.256 -2.885 14.698 Atomic orbital electron populations 1.21588 0.93838 1.01599 1.03006 1.21996 0.98108 0.96081 1.04694 1.22552 0.88002 0.90995 0.70745 1.90484 1.58445 1.47867 1.36889 1.20450 0.94407 0.94571 1.08818 1.21287 0.92839 0.98159 0.97439 1.22300 0.96058 0.97498 1.01087 1.20804 0.96129 0.93253 0.95907 1.17750 0.84136 0.86360 0.83170 1.90614 1.77140 1.26987 1.46511 1.43144 1.08125 1.12642 1.51065 1.19076 0.80887 0.96535 1.51372 0.89453 1.25156 0.98649 0.97092 0.92668 1.69862 1.38308 1.06501 1.30025 0.86250 0.82419 0.78723 0.79047 1.20019 1.21262 1.19653 1.22312 1.02159 0.84700 0.95626 1.21998 1.05153 0.88014 1.02515 1.23678 0.75525 0.86291 0.82190 1.90728 1.40251 1.86566 1.22673 1.84585 1.76605 1.19685 1.52245 1.21246 0.91707 0.99887 0.97825 1.21299 0.95482 0.95875 0.95869 0.92175 0.92178 0.92207 0.88268 0.88356 0.85424 0.82793 0.91969 0.90333 0.87879 0.87467 0.86438 0.73641 0.84591 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.20 37.16 0.34 -0.94 16 2 C -0.17 -1.60 5.02 -27.88 -0.14 -1.74 16 3 C 0.40 5.30 7.12 -30.63 -0.22 5.09 16 4 O -0.46 -7.37 15.96 5.59 0.09 -7.28 16 5 C -0.18 -2.66 5.87 -104.98 -0.62 -3.28 16 6 C -0.08 -1.08 9.46 -39.17 -0.37 -1.45 16 7 C -0.15 -2.46 7.50 -39.24 -0.29 -2.76 16 8 C -0.06 -1.14 5.63 -104.87 -0.59 -1.73 16 9 C 0.50 12.17 6.66 -12.32 -0.08 12.09 16 10 O -0.53 -15.16 14.46 5.29 0.08 -15.08 16 11 N -0.43 -10.05 2.57 -115.90 -0.30 -10.35 16 12 C -0.35 -9.03 9.18 -15.04 -0.14 -9.16 16 13 H 0.09 2.08 7.96 -52.48 -0.42 1.67 16 14 C 0.08 2.07 4.12 -17.44 -0.07 2.00 16 15 N -0.81 -23.13 11.89 55.51 0.66 -22.47 16 16 Si 0.91 20.89 29.63 -169.99 -5.04 15.85 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C 0.08 1.40 4.13 -4.04 -0.02 1.38 16 21 C -0.14 -1.99 5.13 -27.89 -0.14 -2.13 16 22 C 0.48 6.21 8.11 36.00 0.29 6.50 16 23 O -0.51 -7.91 16.74 -18.75 -0.31 -8.23 16 24 O -0.52 -5.12 13.42 -39.25 -0.53 -5.65 16 25 C -0.09 -1.66 9.57 -39.24 -0.38 -2.03 16 26 C -0.07 -1.10 9.58 -39.17 -0.38 -1.47 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.13 1.29 7.03 -52.49 -0.37 0.93 16 33 H 0.16 2.32 2.46 -52.49 -0.13 2.19 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.08 1.51 8.07 -51.93 -0.42 1.09 16 36 H 0.10 1.83 3.76 -55.62 -0.21 1.62 16 37 H 0.11 1.44 7.24 -51.93 -0.38 1.06 16 38 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.41 2.15 9.10 45.56 0.41 2.57 16 40 H 0.14 2.69 7.90 -52.49 -0.41 2.28 16 41 H 0.13 2.00 7.64 -52.49 -0.40 1.60 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -34.18 350.40 -6.85 -41.02 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.98 Total: 6.54 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.80 Total: 0.35 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.36 Total: -32.81 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.68 Total: -36.23 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.18 -6.85 -41.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594718465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.495 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds