Wall clock time and date at job start Tue Mar 31 2020 14:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46980 * 2 1 4 4 O 1.21239 * 120.00126 * 359.97438 * 3 2 1 5 5 C 1.47295 * 119.99691 * 180.02562 * 3 2 1 6 6 C 1.39887 * 120.02113 * 359.71769 * 5 3 2 7 7 C 1.37683 * 119.97440 * 179.80943 * 6 5 3 8 8 C 1.39694 * 120.02218 * 0.45304 * 7 6 5 9 9 C 1.47855 * 119.97878 * 179.76259 * 8 7 6 10 10 O 1.21584 * 120.00321 * 151.11620 * 9 8 7 11 11 N 1.34778 * 119.99546 * 331.11422 * 9 8 7 12 12 C 1.36655 * 119.99646 * 186.91751 * 11 9 8 13 13 H 1.08006 * 119.99854 * 217.11177 * 12 11 9 14 14 C 1.39202 * 120.00359 * 37.11085 * 12 11 9 15 15 N 1.31259 * 119.99883 * 25.98558 * 14 12 11 16 16 Si 1.86803 * 120.00162 * 205.98990 * 14 12 11 17 17 H 1.48503 * 109.47101 * 89.99931 * 16 14 12 18 18 H 1.48499 * 109.46742 * 209.99948 * 16 14 12 19 19 H 1.48497 * 109.47107 * 329.99862 * 16 14 12 20 20 C 1.46497 * 120.00201 * 6.92326 * 11 9 8 21 21 C 1.52999 * 109.47461 * 99.63603 * 20 11 9 22 22 C 1.50697 * 109.47207 * 179.97438 * 21 20 11 23 23 O 1.20829 * 119.99958 * 0.02562 * 22 21 20 24 24 O 1.34226 * 120.00045 * 179.97438 * 22 21 20 25 25 C 1.39701 * 120.04606 * 359.78283 * 8 7 6 26 26 C 1.37685 * 120.02189 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47069 * 300.00692 * 1 2 3 29 29 H 1.08999 * 109.46781 * 59.99843 * 1 2 3 30 30 H 1.08999 * 109.46781 * 120.00157 * 2 1 3 31 31 H 1.09000 * 109.46848 * 240.00060 * 2 1 3 32 32 H 1.07995 * 120.00638 * 0.02562 * 6 5 3 33 33 H 1.07999 * 119.98780 * 180.20796 * 7 6 5 34 34 H 0.97004 * 120.00215 * 184.98292 * 15 14 12 35 35 H 1.09005 * 109.46709 * 219.63764 * 20 11 9 36 36 H 1.08997 * 109.47141 * 339.62999 * 20 11 9 37 37 H 1.08997 * 109.46661 * 299.99843 * 21 20 11 38 38 H 1.08997 * 109.47121 * 60.00022 * 21 20 11 39 39 H 0.96704 * 117.00196 * 179.97438 * 24 22 21 40 40 H 1.08002 * 119.98844 * 179.97438 * 25 8 7 41 41 H 1.07995 * 120.01112 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2445 2.3423 -0.0005 5 6 3.4805 1.6899 -0.0006 6 6 4.3899 0.6270 0.0049 7 6 5.7433 0.8796 0.0004 8 6 6.2085 2.1969 -0.0001 9 6 7.6621 2.4670 0.0004 10 8 8.0916 3.4843 -0.5085 11 7 8.5111 1.5856 0.5650 12 6 9.8354 1.8980 0.6923 13 1 10.5860 1.1334 0.5565 14 6 10.2169 3.2016 0.9970 15 7 9.3936 3.9917 1.6458 16 14 11.9004 3.8266 0.4825 17 1 11.8111 4.4331 -0.8701 18 1 12.3669 4.8486 1.4536 19 1 12.8614 2.6948 0.4550 20 6 8.0143 0.2927 1.0421 21 6 8.3217 -0.7870 0.0025 22 6 7.8112 -2.1171 0.4937 23 8 7.2579 -2.1936 1.5651 24 8 7.9703 -3.2166 -0.2596 25 6 5.3011 3.2591 -0.0005 26 6 3.9472 3.0086 0.0000 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 4.0303 -0.3913 0.0090 33 1 6.4456 0.0591 0.0011 34 1 9.6294 4.9207 1.7949 35 1 8.5031 0.0405 1.9833 36 1 6.9370 0.3520 1.1968 37 1 7.8329 -0.5348 -0.9385 38 1 9.3990 -0.8463 -0.1521 39 1 7.6267 -4.0470 0.0976 40 1 5.6617 4.2771 -0.0004 41 1 3.2459 3.8299 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594718465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:36 Heat of formation + Delta-G solvation = -123.165570 kcal Electronic energy + Delta-G solvation = -26870.282561 eV Core-core repulsion = 22909.044313 eV Total energy + Delta-G solvation = -3961.238248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77721 -41.04197 -40.42490 -38.66923 -37.23262 -36.58913 -34.57423 -33.93882 -32.22028 -32.17856 -31.68467 -27.66530 -26.60793 -25.51669 -24.23078 -23.30473 -22.10457 -21.51769 -20.63534 -19.10656 -19.04029 -18.14276 -17.97934 -17.31901 -16.94323 -16.81025 -16.56530 -16.40201 -15.90579 -15.75589 -15.46954 -15.03041 -14.98414 -14.57345 -14.29230 -14.08925 -13.82366 -13.53129 -13.49429 -13.29427 -13.06722 -12.98057 -12.82606 -12.62188 -12.59143 -12.43801 -12.23186 -12.09930 -11.97335 -11.67534 -11.55854 -10.92695 -10.73135 -10.31884 -10.00414 -9.86331 -9.36277 -8.33835 -6.00994 -0.57501 0.31274 1.22518 1.25995 1.39543 1.48711 1.52270 2.05211 2.20508 2.43989 2.79992 2.97961 3.15171 3.21698 3.70211 3.84788 3.86746 3.93216 4.02400 4.08562 4.24091 4.32787 4.33374 4.44453 4.50207 4.60514 4.68034 4.79287 4.85132 4.93457 5.05492 5.07459 5.10976 5.16133 5.30379 5.35651 5.37969 5.45945 5.68649 5.76789 6.06510 6.52571 6.86958 7.07006 7.10639 7.50337 8.16959 8.74387 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012046 B = 0.004447 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.862251 B = 6295.486598 C = 8318.023992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.400 3.600 4 O -0.492 6.492 5 C -0.173 4.173 6 C -0.057 4.057 7 C -0.143 4.143 8 C -0.087 4.087 9 C 0.488 3.512 10 O -0.589 6.589 11 N -0.443 5.443 12 C -0.366 4.366 13 H 0.101 0.899 14 C 0.026 3.974 15 N -0.861 5.861 16 Si 0.967 3.033 17 H -0.291 1.291 18 H -0.287 1.287 19 H -0.245 1.245 20 C 0.077 3.923 21 C -0.133 4.133 22 C 0.499 3.501 23 O -0.539 6.539 24 O -0.507 6.507 25 C -0.104 4.104 26 C -0.071 4.071 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.262 0.738 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.430 0.570 40 H 0.109 0.891 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -16.803 -3.707 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C 0.281 3.719 4 O -0.370 6.370 5 C -0.174 4.174 6 C -0.074 4.074 7 C -0.161 4.161 8 C -0.091 4.091 9 C 0.279 3.721 10 O -0.472 6.472 11 N -0.161 5.161 12 C -0.493 4.493 13 H 0.119 0.881 14 C -0.182 4.182 15 N -0.495 5.495 16 Si 0.791 3.209 17 H -0.218 1.218 18 H -0.213 1.213 19 H -0.169 1.169 20 C -0.046 4.046 21 C -0.171 4.171 22 C 0.342 3.658 23 O -0.430 6.430 24 O -0.321 6.321 25 C -0.124 4.124 26 C -0.090 4.090 27 H 0.105 0.895 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.199 0.801 33 H 0.186 0.814 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.292 0.708 40 H 0.127 0.873 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.142 -15.354 -3.659 19.321 hybrid contribution 0.960 0.896 0.299 1.347 sum -10.182 -14.458 -3.360 18.000 Atomic orbital electron populations 1.21615 0.93790 1.02950 1.01822 1.22104 0.98134 0.92814 1.07209 1.23090 0.86640 0.92853 0.69338 1.90494 1.58809 1.49437 1.38225 1.20861 0.96125 0.93883 1.06573 1.21754 0.91063 1.00261 0.94338 1.22414 0.97761 0.95790 1.00143 1.20550 0.93583 0.95490 0.99489 1.18481 0.86093 0.85539 0.81986 1.90555 1.78674 1.29149 1.48798 1.43291 1.07651 1.14283 1.50923 1.19476 0.82482 0.96824 1.50512 0.88110 1.26034 1.01750 0.97699 0.92710 1.69967 1.40578 1.06351 1.32616 0.85361 0.79336 0.78773 0.77404 1.21801 1.21250 1.16861 1.22384 1.02360 0.83464 0.96356 1.21742 1.05711 0.88117 1.01553 1.23020 0.74799 0.86385 0.81610 1.90739 1.41564 1.86988 1.23687 1.84508 1.76167 1.20068 1.51394 1.21091 0.92990 0.98703 0.99571 1.21358 0.94140 0.97562 0.95896 0.89505 0.93562 0.93359 0.85683 0.85318 0.80090 0.81364 0.92809 0.91609 0.86993 0.86089 0.86212 0.70796 0.87295 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.20 71.98 0.66 -1.38 16 2 C -0.17 -2.20 5.02 29.85 0.15 -2.05 16 3 C 0.40 9.33 7.12 28.07 0.20 9.53 16 4 O -0.49 -14.90 15.96 -2.90 -0.05 -14.94 16 5 C -0.17 -4.61 5.87 -20.10 -0.12 -4.73 16 6 C -0.06 -1.30 9.46 22.54 0.21 -1.09 16 7 C -0.14 -4.34 7.50 22.49 0.17 -4.17 16 8 C -0.09 -3.59 5.63 -20.03 -0.11 -3.70 16 9 C 0.49 25.01 6.66 86.79 0.58 25.59 16 10 O -0.59 -35.68 14.46 -3.98 -0.06 -35.74 16 11 N -0.44 -21.17 2.57 -638.85 -1.64 -22.81 16 12 C -0.37 -19.19 9.18 84.17 0.77 -18.42 16 13 H 0.10 4.82 7.96 -2.91 -0.02 4.80 16 14 C 0.03 1.45 4.12 85.01 0.35 1.80 16 15 N -0.86 -51.72 11.89 21.70 0.26 -51.46 16 16 Si 0.97 44.35 29.63 68.60 2.03 46.38 16 17 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 20 C 0.08 2.79 4.13 86.38 0.36 3.15 16 21 C -0.13 -3.52 5.13 29.85 0.15 -3.37 16 22 C 0.50 11.07 8.11 71.23 0.58 11.65 16 23 O -0.54 -14.79 16.74 21.95 0.37 -14.42 16 24 O -0.51 -7.67 13.42 -51.38 -0.69 -8.36 16 25 C -0.10 -4.16 9.57 22.49 0.22 -3.94 16 26 C -0.07 -2.34 9.58 22.54 0.22 -2.12 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 30 H 0.13 1.14 8.08 -2.39 -0.02 1.12 16 31 H 0.13 1.04 8.09 -2.39 -0.02 1.02 16 32 H 0.18 2.31 7.03 -2.91 -0.02 2.29 16 33 H 0.17 4.59 2.46 -2.91 -0.01 4.58 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.07 2.52 8.07 -2.38 -0.02 2.51 16 36 H 0.11 3.82 3.76 -5.85 -0.02 3.80 16 37 H 0.12 2.90 7.24 -2.39 -0.02 2.88 16 38 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.43 2.41 9.10 -74.05 -0.67 1.73 16 40 H 0.11 4.81 7.90 -2.91 -0.02 4.78 16 41 H 0.14 4.23 7.64 -2.91 -0.02 4.21 16 Total: -1.00 -80.82 350.40 5.01 -75.81 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.41 Total: 18.81 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 4.38 Total: 6.74 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.38 Total: -74.27 kcal Atomic # 8 Polarization: -73.03 SS G_CDS: -0.43 Total: -73.46 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -80.82 5.01 -75.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594718465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.360 kcal (2) G-P(sol) polarization free energy of solvation -80.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds