Wall clock time and date at job start Tue Mar 31 2020 12:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99831 * 2 1 4 4 H 1.48503 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46844 * 300.00373 * 3 2 1 6 6 H 1.48501 * 109.47004 * 60.00539 * 3 2 1 7 7 C 1.37875 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00200 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47254 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47054 * 179.97438 * 10 9 7 12 12 C 1.38873 * 119.99725 * 179.97438 * 11 10 9 13 13 C 1.38952 * 120.18034 * 5.35327 * 12 11 10 14 14 C 1.37957 * 120.06798 * 180.29689 * 13 12 11 15 15 C 1.38614 * 120.41857 * 359.71935 * 14 13 12 16 16 N 1.48022 * 119.81856 * 179.97438 * 15 14 13 17 17 O 1.21796 * 119.99895 * 180.02562 * 16 15 14 18 18 O 1.21794 * 119.99985 * 0.02562 * 16 15 14 19 19 C 1.37742 * 120.35625 * 0.02562 * 15 14 13 20 20 C 1.39742 * 119.92555 * 359.97438 * 19 15 14 21 21 C 1.47431 * 120.20681 * 180.02562 * 20 19 15 22 22 O 1.21602 * 119.99890 * 174.07179 * 21 20 19 23 23 N 1.34774 * 119.99928 * 354.34395 * 21 20 19 24 24 C 1.46501 * 119.99845 * 179.97438 * 23 21 20 25 25 C 1.53003 * 117.49840 * 223.74911 * 24 23 21 26 26 C 1.53003 * 117.49963 * 155.08777 * 24 23 21 27 27 H 0.97000 * 120.00318 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47399 * 60.00336 * 9 7 2 29 29 H 1.09009 * 109.47397 * 300.00179 * 9 7 2 30 30 H 1.08998 * 109.46507 * 60.00165 * 10 9 7 31 31 H 1.08995 * 109.46904 * 300.00138 * 10 9 7 32 32 H 0.97003 * 120.00252 * 0.02562 * 11 10 9 33 33 H 1.08002 * 119.96445 * 0.02562 * 13 12 11 34 34 H 1.07994 * 119.78896 * 179.69317 * 14 13 12 35 35 H 1.07996 * 120.04239 * 180.02562 * 19 15 14 36 36 H 0.97000 * 120.00307 * 0.02562 * 23 21 20 37 37 H 1.09004 * 115.54823 * 9.42084 * 24 23 21 38 38 H 1.08999 * 117.49980 * 0.02562 * 25 24 23 39 39 H 1.09004 * 117.49809 * 145.02320 * 25 24 23 40 40 H 1.08999 * 117.49882 * 214.97574 * 26 24 23 41 41 H 1.09003 * 117.49802 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9307 0.0001 12 6 2.2073 -6.1334 -0.0003 13 6 3.5924 -6.1403 0.1107 14 6 4.2804 -7.3360 0.1039 15 6 3.5983 -8.5376 -0.0076 16 7 4.3499 -9.8128 -0.0141 17 8 3.7539 -10.8704 -0.1123 18 8 5.5642 -9.8044 0.0788 19 6 2.2250 -8.5512 -0.1134 20 6 1.5134 -7.3486 -0.1080 21 6 0.0434 -7.3560 -0.2203 22 8 -0.5802 -6.3182 -0.1072 23 7 -0.6096 -8.5138 -0.4429 24 6 -2.0704 -8.5212 -0.5540 25 6 -2.8285 -9.6330 0.1740 26 6 -2.7124 -9.6577 -1.3522 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6042 0.8895 31 1 2.8720 -3.6042 -0.8905 32 1 0.5429 -4.9308 0.0000 33 1 4.1312 -5.2084 0.1981 34 1 5.3573 -7.3359 0.1855 35 1 1.6987 -9.4903 -0.1996 36 1 -0.1125 -9.3422 -0.5288 37 1 -2.5429 -7.5402 -0.6058 38 1 -2.2405 -10.3587 0.7359 39 1 -3.8001 -9.3837 0.6008 40 1 -3.6076 -9.4245 -1.9287 41 1 -2.0480 -10.4001 -1.7943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784174607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:10 Heat of formation + Delta-G solvation = 8.977402 kcal Electronic energy + Delta-G solvation = -25797.637498 eV Core-core repulsion = 21874.422150 eV Total energy + Delta-G solvation = -3923.215347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07503 -40.77845 -38.98658 -37.31085 -36.47052 -36.25363 -33.52157 -33.27195 -31.47090 -31.15292 -29.07770 -26.00530 -24.81043 -24.59948 -22.79944 -22.74485 -21.62632 -21.44480 -20.57435 -19.42016 -18.60676 -17.66476 -17.42862 -17.23843 -16.70310 -16.41408 -15.78468 -15.29336 -14.99981 -14.76676 -14.59872 -14.44373 -14.16220 -13.78691 -13.38586 -13.09717 -12.98522 -12.37836 -12.11666 -11.96140 -11.73730 -11.49346 -11.44718 -11.40131 -11.09649 -11.09110 -10.92692 -10.86919 -10.73811 -10.14629 -10.08705 -9.80279 -9.64222 -9.42999 -9.11864 -8.56675 -7.78389 -6.20484 -4.25880 0.04868 0.48222 1.48839 1.53977 2.46636 2.68035 3.19930 3.27157 3.30096 3.34298 3.42291 3.63035 4.16566 4.20328 4.30826 4.41899 4.59568 4.64381 4.65069 4.72811 4.92545 5.16388 5.22683 5.27206 5.34470 5.46205 5.58170 5.64448 5.70078 5.71462 5.83411 5.91089 6.07399 6.14457 6.40624 6.49028 6.98376 7.12079 7.41810 7.42793 7.62081 7.75297 7.76111 8.03609 8.13249 8.79695 9.39937 10.90802 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.003375 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.065351 B = 8295.272130 C =10946.222823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.101 3.899 11 N -0.676 5.676 12 C 0.322 3.678 13 C -0.203 4.203 14 C 0.016 3.984 15 C -0.135 4.135 16 N 0.049 4.951 17 O -0.190 6.190 18 O -0.181 6.181 19 C 0.038 3.962 20 C -0.241 4.241 21 C 0.581 3.419 22 O -0.532 6.532 23 N -0.699 5.699 24 C 0.079 3.921 25 C -0.193 4.193 26 C -0.189 4.189 27 H 0.263 0.737 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.425 0.575 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.402 0.598 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -19.273 -0.962 19.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.024 4.024 10 C -0.021 4.021 11 N -0.301 5.301 12 C 0.198 3.802 13 C -0.226 4.226 14 C -0.005 4.005 15 C -0.223 4.223 16 N 0.561 4.439 17 O -0.400 6.400 18 O -0.393 6.393 19 C 0.017 3.983 20 C -0.251 4.251 21 C 0.371 3.629 22 O -0.410 6.410 23 N -0.348 5.348 24 C -0.026 4.026 25 C -0.231 4.231 26 C -0.227 4.227 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.275 0.725 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.238 0.762 37 H 0.160 0.840 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.192 -17.529 -0.885 17.592 hybrid contribution 0.507 0.073 -0.041 0.514 sum -0.685 -17.456 -0.926 17.494 Atomic orbital electron populations 1.69969 1.06150 1.27001 1.49575 1.25013 0.94894 0.99533 0.94774 0.86441 0.80018 0.83240 0.77756 1.19571 1.20848 1.20837 1.20997 0.93115 0.90163 1.52331 0.92125 1.19300 0.94069 0.90579 0.98463 1.22199 0.97131 0.82037 1.00781 1.46780 1.12751 1.03179 1.67417 1.18249 0.91602 0.86178 0.84191 1.20766 0.91834 0.98838 1.11210 1.20815 1.01453 0.89093 0.89103 1.20415 0.91798 0.83713 1.26350 1.43445 1.01062 1.02641 0.96724 1.94485 1.70894 1.19767 1.54852 1.94508 0.96139 1.94221 1.54436 1.20684 0.91323 0.98143 0.88102 1.18992 0.92776 0.91968 1.21367 1.17786 0.86166 0.83461 0.75504 1.90520 1.67909 1.31268 1.51278 1.45178 1.06390 1.09907 1.73359 1.21663 0.79841 0.96820 1.04299 1.23459 1.02711 1.02178 0.94785 1.23411 1.03432 1.01345 0.94504 0.92695 0.95637 0.95623 0.91726 0.91715 0.72492 0.82780 0.82963 0.83613 0.76223 0.84005 0.88379 0.87790 0.87666 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -13.80 9.11 -34.44 -0.31 -14.11 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.17 16 10 C 0.10 1.83 4.87 -4.04 -0.02 1.81 16 11 N -0.68 -11.19 5.59 -58.45 -0.33 -11.51 16 12 C 0.32 4.50 6.65 -83.61 -0.56 3.94 16 13 C -0.20 -2.43 9.30 -39.42 -0.37 -2.80 16 14 C 0.02 0.18 9.54 -39.55 -0.38 -0.19 16 15 C -0.14 -1.63 6.84 -79.99 -0.55 -2.18 16 16 N 0.05 0.67 4.45 33.94 0.15 0.83 16 17 O -0.19 -2.66 18.43 -29.46 -0.54 -3.20 16 18 O -0.18 -2.61 18.43 -29.46 -0.54 -3.16 16 19 C 0.04 0.42 9.02 -39.20 -0.35 0.06 16 20 C -0.24 -3.03 5.89 -104.80 -0.62 -3.65 16 21 C 0.58 7.63 7.75 -12.52 -0.10 7.53 16 22 O -0.53 -8.83 13.21 5.28 0.07 -8.76 16 23 N -0.70 -6.80 5.52 -54.88 -0.30 -7.10 16 24 C 0.08 0.73 6.43 -67.93 -0.44 0.29 16 25 C -0.19 -1.36 10.46 -26.69 -0.28 -1.64 16 26 C -0.19 -1.26 10.46 -26.69 -0.28 -1.54 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.66 8.14 -51.92 -0.42 0.23 16 30 H 0.06 1.10 7.74 -51.93 -0.40 0.70 16 31 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 32 H 0.43 7.73 4.98 -40.94 -0.20 7.52 16 33 H 0.15 1.69 6.72 -52.49 -0.35 1.33 16 34 H 0.15 1.42 7.59 -52.49 -0.40 1.03 16 35 H 0.15 1.22 5.98 -52.49 -0.31 0.91 16 36 H 0.40 2.89 6.89 -40.82 -0.28 2.61 16 37 H 0.14 1.53 7.40 -51.93 -0.38 1.15 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -30.42 356.96 -9.72 -40.13 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.84 Total: 7.43 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.48 Total: -10.76 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.26 Total: -42.58 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.02 Total: -15.11 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.42 -9.72 -40.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784174607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.111 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds