Wall clock time and date at job start Tue Mar 31 2020 12:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48497 * 109.47076 * 275.00284 * 3 2 1 5 5 H 1.48500 * 109.46968 * 35.00025 * 3 2 1 6 6 H 1.48494 * 109.47223 * 155.00160 * 3 2 1 7 7 C 1.40028 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00289 * 185.29722 * 7 2 1 9 9 C 1.41335 * 119.99988 * 5.30065 * 7 2 1 10 10 C 1.40604 * 119.79153 * 185.30537 * 9 7 2 11 11 C 1.38314 * 119.13331 * 180.02562 * 10 9 7 12 12 C 1.38686 * 118.66638 * 0.02562 * 11 10 9 13 13 C 1.39634 * 119.49970 * 0.02562 * 12 11 10 14 14 N 1.39251 * 119.57625 * 180.02562 * 13 12 11 15 15 C 1.34780 * 119.99563 * 339.09698 * 14 13 12 16 16 O 1.21569 * 120.00389 * 3.76221 * 15 14 13 17 17 N 1.34780 * 119.99793 * 183.76154 * 15 14 13 18 18 C 1.46499 * 119.99913 * 175.01671 * 17 15 14 19 19 C 1.52999 * 112.84994 * 65.37967 * 18 17 15 20 20 C 1.50698 * 109.47299 * 52.32018 * 19 18 17 21 21 O 1.20824 * 120.00043 * 355.23849 * 20 19 18 22 22 O 1.34225 * 119.99774 * 175.24103 * 20 19 18 23 23 C 1.53781 * 113.68918 * 196.64131 * 18 17 15 24 24 C 1.53782 * 87.08038 * 89.12941 * 23 18 17 25 25 C 1.53782 * 87.08209 * 25.43223 * 24 23 18 26 26 N 1.31928 * 120.85127 * 0.27532 * 13 12 11 27 27 H 0.97003 * 119.99777 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.43062 * 0.03061 * 10 9 7 29 29 H 1.07998 * 120.66145 * 179.97438 * 11 10 9 30 30 H 1.08003 * 120.24804 * 180.02562 * 12 11 10 31 31 H 0.96999 * 120.00086 * 159.10170 * 14 13 12 32 32 H 0.97006 * 120.00226 * 355.01799 * 17 15 14 33 33 H 1.09006 * 109.46425 * 292.32352 * 19 18 17 34 34 H 1.08995 * 109.46898 * 172.32377 * 19 18 17 35 35 H 0.96704 * 116.99858 * 179.97438 * 22 20 19 36 36 H 1.09002 * 113.61618 * 203.67530 * 23 18 17 37 37 H 1.09000 * 113.61972 * 334.58418 * 23 18 17 38 38 H 1.09005 * 113.61448 * 270.88269 * 24 23 18 39 39 H 1.09000 * 113.61818 * 139.98080 * 24 23 18 40 40 H 1.09002 * 113.61447 * 220.02185 * 25 24 23 41 41 H 1.08999 * 113.61601 * 89.11284 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3833 2.1074 -1.3947 5 1 1.4958 2.6198 0.8031 6 1 3.5879 1.4119 0.5916 7 6 2.0076 -1.2127 -0.0005 8 1 3.0841 -1.2148 0.0858 9 6 1.3054 -2.4340 -0.1142 10 6 1.9993 -3.6518 -0.0021 11 6 1.2987 -4.8389 -0.1160 12 6 -0.0692 -4.7855 -0.3382 13 6 -0.7011 -3.5446 -0.4413 14 7 -2.0746 -3.4890 -0.6638 15 6 -2.7156 -4.5520 -1.1890 16 8 -2.1080 -5.5826 -1.4047 17 7 -4.0303 -4.4723 -1.4750 18 6 -4.7029 -5.5876 -2.1457 19 6 -4.7489 -6.8550 -1.2898 20 6 -5.3248 -6.5266 0.0636 21 8 -5.5835 -5.3812 0.3483 22 8 -5.5502 -7.5065 0.9527 23 6 -6.0608 -5.2103 -2.7609 24 6 -5.2898 -4.8377 -4.0383 25 6 -4.2088 -5.8314 -3.5814 26 7 -0.0129 -2.4240 -0.3354 27 1 -0.4850 0.8401 0.0004 28 1 3.0653 -3.6600 0.1707 29 1 1.8069 -5.7883 -0.0344 30 1 -0.6414 -5.6968 -0.4308 31 1 -2.5699 -2.6854 -0.4410 32 1 -4.5312 -3.6765 -1.2367 33 1 -3.7397 -7.2488 -1.1693 34 1 -5.3743 -7.6015 -1.7793 35 1 -5.9203 -7.2470 1.8076 36 1 -6.7332 -6.0586 -2.8886 37 1 -6.5388 -4.3593 -2.2756 38 1 -4.9508 -3.8019 -4.0572 39 1 -5.7963 -5.1351 -4.9565 40 1 -3.1916 -5.4819 -3.7583 41 1 -4.3749 -6.8496 -3.9333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:41 Heat of formation + Delta-G solvation = -45.462780 kcal Electronic energy + Delta-G solvation = -27024.495614 eV Core-core repulsion = 23098.919563 eV Total energy + Delta-G solvation = -3925.576051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04857 -39.79114 -38.81646 -37.45329 -36.08863 -34.16433 -33.40660 -32.71980 -30.71134 -30.32029 -28.87378 -25.92490 -25.44880 -24.36122 -22.30543 -21.52368 -21.28878 -20.25912 -19.16914 -18.15113 -18.06498 -17.24242 -16.63996 -16.30361 -15.93321 -15.61273 -15.17591 -14.77731 -14.60876 -14.55099 -14.13972 -13.79726 -13.37002 -13.19570 -12.87553 -12.68082 -12.43740 -12.25788 -11.97029 -11.75092 -11.52650 -11.25055 -11.10075 -11.02876 -10.95362 -10.89594 -10.62870 -10.60304 -10.36463 -10.06434 -9.78050 -9.20280 -8.93200 -8.82801 -7.98810 -7.62601 -7.03089 -6.39584 -4.45657 2.21940 2.72241 2.89200 2.98345 3.03963 3.10778 3.14284 3.28552 3.71395 3.97655 4.25595 4.43104 4.54789 4.56899 4.74252 4.82546 5.10885 5.23911 5.37754 5.48112 5.53707 5.69725 5.74649 5.95066 5.95673 6.05440 6.13054 6.20595 6.45000 6.49201 6.67731 6.79095 6.86288 7.03970 7.15716 7.29958 7.56287 7.67667 7.86385 7.95946 8.12957 8.22364 8.50630 8.74624 8.95167 9.10457 10.09844 10.34931 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.003386 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.757552 B = 8268.396275 C = 8682.775540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.439 4.439 8 H 0.085 0.915 9 C 0.282 3.718 10 C -0.291 4.291 11 C -0.051 4.051 12 C -0.314 4.314 13 C 0.373 3.627 14 N -0.658 5.658 15 C 0.710 3.290 16 O -0.572 6.572 17 N -0.716 5.716 18 C 0.189 3.811 19 C -0.119 4.119 20 C 0.481 3.519 21 O -0.508 6.508 22 O -0.522 6.522 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.137 4.137 26 N -0.511 5.511 27 H 0.270 0.730 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.403 0.597 32 H 0.401 0.599 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.407 0.593 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.368 -9.194 -3.997 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.151 4.151 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.155 3.845 10 C -0.314 4.314 11 C -0.076 4.076 12 C -0.339 4.339 13 C 0.138 3.862 14 N -0.304 5.304 15 C 0.411 3.589 16 O -0.450 6.450 17 N -0.372 5.372 18 C 0.100 3.900 19 C -0.158 4.158 20 C 0.324 3.676 21 O -0.395 6.395 22 O -0.334 6.334 23 C -0.175 4.175 24 C -0.176 4.176 25 C -0.175 4.175 26 N -0.229 5.229 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.157 0.843 31 H 0.238 0.762 32 H 0.237 0.763 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.265 0.735 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.345 -8.962 -4.592 17.527 hybrid contribution 0.116 0.974 0.987 1.391 sum -14.229 -7.988 -3.605 16.712 Atomic orbital electron populations 1.70088 1.07252 1.27511 1.29907 1.26011 0.94832 1.00937 0.93307 0.86339 0.80582 0.81028 0.78974 1.19561 1.20254 1.18552 1.19547 0.94528 0.89361 1.43648 0.89728 1.18152 0.86394 0.92072 0.87866 1.21707 0.99244 0.93546 1.16925 1.20829 0.93904 0.96545 0.96281 1.21832 0.95412 0.97986 1.18638 1.18212 0.82354 0.91016 0.94602 1.42238 1.07554 1.16499 1.64133 1.15742 0.81131 0.83892 0.78164 1.90750 1.65339 1.29496 1.59371 1.44672 1.07813 1.20194 1.64530 1.20706 0.93708 0.85129 0.90423 1.21837 1.04744 1.00027 0.89170 1.23460 0.74399 0.82895 0.86872 1.90678 1.48236 1.21929 1.78682 1.84544 1.77537 1.42337 1.28991 1.23263 0.95061 1.02447 0.96681 1.22832 0.97345 1.00179 0.97278 1.23270 1.00537 1.00095 0.93643 1.67961 1.08428 1.25054 1.21481 0.91867 0.88353 0.88460 0.84295 0.76186 0.76340 0.85635 0.87266 0.73476 0.88853 0.90462 0.89873 0.91065 0.89940 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.19 11.52 55.55 0.64 -18.55 16 2 C 0.07 1.88 5.48 -17.34 -0.10 1.79 16 3 Si 0.91 18.76 29.56 -169.99 -5.03 13.74 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.44 -11.92 9.13 -37.73 -0.34 -12.26 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.28 7.91 6.53 -84.99 -0.56 7.36 16 10 C -0.29 -7.48 9.83 -38.66 -0.38 -7.86 16 11 C -0.05 -1.23 10.15 -39.39 -0.40 -1.63 16 12 C -0.31 -7.83 8.90 -38.90 -0.35 -8.18 16 13 C 0.37 9.49 7.51 -154.99 -1.16 8.32 16 14 N -0.66 -13.81 5.42 -15.79 -0.09 -13.90 16 15 C 0.71 13.28 7.95 -86.91 -0.69 12.59 16 16 O -0.57 -11.88 11.03 5.30 0.06 -11.82 16 17 N -0.72 -10.14 3.59 -51.66 -0.19 -10.32 16 18 C 0.19 2.16 0.27 -131.01 -0.03 2.12 16 19 C -0.12 -1.30 5.06 -27.88 -0.14 -1.44 16 20 C 0.48 5.84 8.17 36.00 0.29 6.14 16 21 O -0.51 -7.29 15.47 -18.75 -0.29 -7.58 16 22 O -0.52 -5.21 13.42 -39.25 -0.53 -5.74 16 23 C -0.14 -1.18 7.25 -25.92 -0.19 -1.37 16 24 C -0.14 -1.25 7.99 -25.92 -0.21 -1.46 16 25 C -0.14 -1.48 7.03 -25.92 -0.18 -1.66 16 26 N -0.51 -14.21 7.95 -10.26 -0.08 -14.29 16 27 H 0.27 6.47 8.29 -40.82 -0.34 6.14 16 28 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 30 H 0.14 3.41 5.16 -52.95 -0.27 3.14 16 31 H 0.40 7.82 8.84 -40.82 -0.36 7.46 16 32 H 0.40 5.21 8.54 -40.82 -0.35 4.87 16 33 H 0.13 1.64 6.89 -51.93 -0.36 1.28 16 34 H 0.11 0.82 8.02 -51.93 -0.42 0.41 16 35 H 0.41 2.48 9.10 45.56 0.41 2.89 16 36 H 0.09 0.63 8.01 -51.93 -0.42 0.21 16 37 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 1.16 7.55 -51.93 -0.39 0.77 16 41 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -33.56 347.38 -8.92 -42.48 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -4.23 Total: 18.30 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -4.43 Total: 2.45 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.29 Total: -57.06 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.76 Total: -25.14 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.56 -8.92 -42.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.982 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds