Wall clock time and date at job start Tue Mar 31 2020 14:20:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46495 * 109.47202 * 2 1
4 4 C 1.46505 * 120.00178 * 269.99685 * 3 2 1
5 5 C 1.50697 * 109.47451 * 270.00460 * 4 3 2
6 6 H 1.08004 * 119.99835 * 359.97438 * 5 4 3
7 7 C 1.37877 * 120.00497 * 179.97438 * 5 4 3
8 8 N 1.31512 * 119.99506 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 120.00481 * 179.97438 * 7 5 4
10 10 H 1.48505 * 109.46986 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.46997 * 119.99820 * 9 7 5
12 12 H 1.48494 * 109.47582 * 240.00562 * 9 7 5
13 13 C 1.34774 * 120.00559 * 89.99963 * 3 2 1
14 14 O 1.21279 * 120.00445 * 179.97438 * 13 3 2
15 15 C 1.50707 * 119.99673 * 0.02562 * 13 3 2
16 16 C 1.52998 * 109.47073 * 179.97438 * 15 13 3
17 17 C 1.50704 * 109.47072 * 179.97438 * 16 15 13
18 18 N 1.30926 * 126.39686 * 89.99901 * 17 16 15
19 19 C 1.35404 * 105.57499 * 179.97438 * 18 17 16
20 20 C 1.47725 * 126.44857 * 179.97438 * 19 18 17
21 21 C 1.35991 * 125.93712 * 180.02562 * 20 19 18
22 22 C 1.40816 * 106.74029 * 179.74082 * 21 20 19
23 23 C 1.34816 * 107.04028 * 0.37215 * 22 21 20
24 24 O 1.34199 * 108.67861 * 359.62143 * 23 22 21
25 25 N 1.31043 * 107.09887 * 0.24668 * 19 18 17
26 26 O 1.21290 * 110.04511 * 359.57617 * 25 19 18
27 27 H 1.08998 * 109.47575 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.47224 * 300.00264 * 1 2 3
29 29 H 1.09000 * 109.47162 * 59.99753 * 1 2 3
30 30 H 1.09002 * 109.47224 * 239.99735 * 2 1 3
31 31 H 1.09001 * 109.47296 * 119.99712 * 2 1 3
32 32 H 1.09005 * 109.46642 * 29.99978 * 4 3 2
33 33 H 1.08999 * 109.47493 * 149.99811 * 4 3 2
34 34 H 0.97003 * 120.00082 * 180.02562 * 8 7 5
35 35 H 1.08997 * 109.47073 * 59.99930 * 15 13 3
36 36 H 1.09003 * 109.46843 * 299.99862 * 15 13 3
37 37 H 1.09006 * 109.46819 * 60.00239 * 16 15 13
38 38 H 1.08996 * 109.47407 * 300.00188 * 16 15 13
39 39 H 1.07997 * 126.62769 * 359.96721 * 21 20 19
40 40 H 1.07996 * 126.48398 * 180.26681 * 22 21 20
41 41 H 1.08002 * 125.66397 * 179.89332 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2626 2.0718 -1.2687
5 6 3.6858 1.8349 -1.7038
6 1 4.3429 1.2307 -1.0958
7 6 4.1492 2.3895 -2.8780
8 7 3.3492 3.1257 -3.6181
9 14 5.9136 2.0965 -3.4169
10 1 6.6012 1.2412 -2.4164
11 1 5.9214 1.4169 -4.7373
12 1 6.6206 3.3978 -3.5257
13 6 2.2430 2.0166 1.1671
14 8 2.6477 3.1599 1.1671
15 6 1.9923 1.3060 2.4723
16 6 2.3243 2.2433 3.6352
17 6 2.0730 1.5329 4.9403
18 7 2.9370 0.8151 5.6130
19 6 2.2725 0.3796 6.7094
20 6 2.8182 -0.4729 7.7854
21 6 2.1407 -0.9048 8.8826
22 6 3.0390 -1.6893 9.6312
23 6 4.2114 -1.6911 8.9656
24 8 4.0733 -0.9582 7.8499
25 7 1.0525 0.8519 6.6334
26 8 0.9266 1.5184 5.6278
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.5817 1.6876 -2.0284
33 1 2.0956 3.1410 -1.1385
34 1 3.6751 3.5156 -4.4444
35 1 2.6229 0.4188 2.5299
36 1 0.9445 1.0115 2.5302
37 1 1.6940 3.1308 3.5778
38 1 3.3722 2.5375 3.5770
39 1 1.1114 -0.6908 9.1298
40 1 2.8291 -2.1928 10.5633
41 1 5.1111 -2.2015 9.2762
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000103207235.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:20:49
Heat of formation + Delta-G solvation = 48.014069 kcal
Electronic energy + Delta-G solvation = -25591.103674 eV
Core-core repulsion = 21669.581083 eV
Total energy + Delta-G solvation = -3921.522590 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-45.81563 -42.96892 -39.26389 -36.26934 -35.47732 -34.65405 -33.49649 -32.82669
-31.51586 -30.12669 -29.84815 -27.54908 -25.49892 -24.86391 -23.26034 -23.03215
-22.14541 -21.85271 -20.77429 -18.71485 -18.55743 -18.11233 -17.21760 -16.63205
-16.43955 -16.37024 -15.66873 -15.56051 -15.26239 -14.49966 -14.24874 -13.76073
-13.45171 -13.38570 -13.32587 -13.03776 -12.83654 -12.78424 -12.54310 -12.24427
-12.14507 -12.02189 -11.63298 -11.38573 -11.27753 -11.15929 -10.90399 -10.72086
-10.63841 -10.51318 -10.33989 -10.14842 -9.63876 -9.02510 -8.82600 -8.45213
-7.72259 -6.06073 -4.10657 0.45075 1.16356 1.92524 2.10020 2.50417
2.52514 3.25689 3.29258 3.30704 3.37494 3.41990 3.84909 3.97530
4.43347 4.49910 4.51203 4.59508 4.79321 4.94298 5.03223 5.20868
5.27133 5.28813 5.33277 5.38572 5.47971 5.49838 5.59542 5.63630
5.73468 5.84454 5.90548 5.95026 6.02643 6.20689 6.45831 6.57718
7.02071 7.41449 7.50015 7.81811 7.90256 8.21284 8.35383 8.86140
9.01762 9.54628 11.02058
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.018459 B = 0.002466 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.472295 B =11350.776570 C =11993.854367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.105 3.895
3 N -0.594 5.594
4 C 0.245 3.755
5 C -0.526 4.526
6 H 0.058 0.942
7 C 0.061 3.939
8 N -0.895 5.895
9 Si 0.898 3.102
10 H -0.273 1.273
11 H -0.284 1.284
12 H -0.283 1.283
13 C 0.510 3.490
14 O -0.541 6.541
15 C -0.140 4.140
16 C -0.015 4.015
17 C 0.205 3.795
18 N -0.467 5.467
19 C 0.240 3.760
20 C 0.051 3.949
21 C -0.149 4.149
22 C -0.218 4.218
23 C -0.011 4.011
24 O -0.153 6.153
25 N -0.363 5.363
26 O 0.089 5.911
27 H 0.059 0.941
28 H 0.051 0.949
29 H 0.061 0.939
30 H 0.083 0.917
31 H 0.065 0.935
32 H 0.033 0.967
33 H 0.045 0.955
34 H 0.263 0.737
35 H 0.097 0.903
36 H 0.095 0.905
37 H 0.115 0.885
38 H 0.123 0.877
39 H 0.158 0.842
40 H 0.158 0.842
41 H 0.213 0.787
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.783 -10.201 22.453 25.122
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.020 4.020
3 N -0.325 5.325
4 C 0.126 3.874
5 C -0.565 4.565
6 H 0.076 0.924
7 C -0.141 4.141
8 N -0.534 5.534
9 Si 0.725 3.275
10 H -0.198 1.198
11 H -0.210 1.210
12 H -0.209 1.209
13 C 0.296 3.704
14 O -0.419 6.419
15 C -0.182 4.182
16 C -0.054 4.054
17 C -0.015 4.015
18 N -0.200 5.200
19 C -0.029 4.029
20 C 0.000 4.000
21 C -0.171 4.171
22 C -0.237 4.237
23 C -0.081 4.081
24 O -0.046 6.046
25 N -0.070 5.070
26 O 0.026 5.974
27 H 0.078 0.922
28 H 0.070 0.930
29 H 0.081 0.919
30 H 0.102 0.898
31 H 0.083 0.917
32 H 0.051 0.949
33 H 0.063 0.937
34 H 0.072 0.928
35 H 0.116 0.884
36 H 0.113 0.887
37 H 0.133 0.867
38 H 0.141 0.859
39 H 0.176 0.824
40 H 0.176 0.824
41 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges -4.558 -9.777 22.698 25.130
hybrid contribution 0.870 -0.314 -0.337 0.985
sum -3.687 -10.091 22.360 24.807
Atomic orbital electron populations
1.22224 0.96697 1.01490 1.02393 1.21445 0.93560 0.84137 1.02819
1.48242 1.63315 1.13267 1.07715 1.19304 0.96341 0.93684 0.78023
1.21465 0.96887 1.31863 1.06237 0.92384 1.24936 0.97867 0.94925
0.96417 1.69939 1.35613 1.33487 1.14321 0.86448 0.84632 0.78071
0.78312 1.19776 1.21005 1.20867 1.19958 0.78790 0.86850 0.84831
1.90694 1.46011 1.17981 1.87173 1.21733 1.04092 0.99698 0.92637
1.20135 1.06818 0.97064 0.81425 1.29009 0.80245 0.94733 0.97500
1.72233 1.29762 1.13670 1.04358 1.22193 0.87423 0.99652 0.93635
1.18017 0.84151 1.02596 0.95281 1.21842 1.01487 1.00075 0.93708
1.21822 0.93369 1.05173 1.03336 1.24388 1.01029 0.97156 0.85559
1.84135 1.28891 1.52262 1.39340 1.74992 1.17861 1.10449 1.03666
1.85328 1.36460 1.50886 1.24696 0.92171 0.92997 0.91944 0.89843
0.91698 0.94944 0.93744 0.92766 0.88447 0.88683 0.86689 0.85872
0.82393 0.82410 0.77029
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16
2 C 0.10 1.58 5.93 -4.05 -0.02 1.55 16
3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16
4 C 0.25 6.18 5.16 -5.19 -0.03 6.15 16
5 C -0.53 -14.55 9.39 -34.44 -0.32 -14.88 16
6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16
7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16
8 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16
9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16
10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
13 C 0.51 9.59 7.67 -10.98 -0.08 9.50 16
14 O -0.54 -12.37 15.56 5.56 0.09 -12.28 16
15 C -0.14 -1.82 4.23 -27.88 -0.12 -1.94 16
16 C -0.02 -0.18 5.13 -27.88 -0.14 -0.32 16
17 C 0.21 2.54 7.74 -12.97 -0.10 2.44 16
18 N -0.47 -6.67 11.58 -9.87 -0.11 -6.79 16
19 C 0.24 3.29 8.06 -156.03 -1.26 2.03 16
20 C 0.05 0.63 7.26 -36.51 -0.26 0.36 16
21 C -0.15 -1.44 10.82 -39.41 -0.43 -1.87 16
22 C -0.22 -1.60 10.89 -39.82 -0.43 -2.03 16
23 C -0.01 -0.08 12.08 29.52 0.36 0.27 16
24 O -0.15 -1.77 10.67 4.82 0.05 -1.72 16
25 N -0.36 -4.78 12.18 30.99 0.38 -4.40 16
26 O 0.09 1.09 11.29 17.99 0.20 1.29 16
27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.05 0.60 7.22 -51.93 -0.38 0.23 16
29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
30 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16
31 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16
32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16
33 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16
34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
35 H 0.10 1.20 7.40 -51.93 -0.38 0.81 16
36 H 0.09 1.02 7.19 -51.93 -0.37 0.64 16
37 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16
38 H 0.12 1.57 8.10 -51.93 -0.42 1.15 16
39 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16
40 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16
41 H 0.21 0.65 8.06 -52.49 -0.42 0.22 16
LS Contribution 362.54 15.07 5.46 5.46
Total: -1.00 -34.28 362.54 -6.40 -40.68
By element:
Atomic # 1 Polarization: 2.87 SS G_CDS: -5.19 Total: -2.32 kcal
Atomic # 6 Polarization: 3.69 SS G_CDS: -2.56 Total: 1.13 kcal
Atomic # 7 Polarization: -49.43 SS G_CDS: 0.57 Total: -48.86 kcal
Atomic # 8 Polarization: -13.05 SS G_CDS: 0.34 Total: -12.71 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -34.28 -6.40 -40.68 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103207235.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.696 kcal
(2) G-P(sol) polarization free energy of solvation -34.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.415 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds