Wall clock time and date at job start Tue Mar 31 2020 14:20:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46495 * 109.47202 * 2 1
4 4 C 1.46505 * 120.00178 * 269.99685 * 3 2 1
5 5 C 1.50697 * 109.47451 * 270.00460 * 4 3 2
6 6 H 1.08004 * 119.99835 * 359.97438 * 5 4 3
7 7 C 1.37877 * 120.00497 * 179.97438 * 5 4 3
8 8 N 1.31512 * 119.99506 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 120.00481 * 179.97438 * 7 5 4
10 10 H 1.48505 * 109.46986 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.46997 * 119.99820 * 9 7 5
12 12 H 1.48494 * 109.47582 * 240.00562 * 9 7 5
13 13 C 1.34774 * 120.00559 * 89.99963 * 3 2 1
14 14 O 1.21279 * 120.00445 * 179.97438 * 13 3 2
15 15 C 1.50707 * 119.99673 * 0.02562 * 13 3 2
16 16 C 1.52998 * 109.47073 * 179.97438 * 15 13 3
17 17 C 1.50704 * 109.47072 * 179.97438 * 16 15 13
18 18 N 1.30926 * 126.39686 * 89.99901 * 17 16 15
19 19 C 1.35404 * 105.57499 * 179.97438 * 18 17 16
20 20 C 1.47725 * 126.44857 * 179.97438 * 19 18 17
21 21 C 1.35991 * 125.93712 * 180.02562 * 20 19 18
22 22 C 1.40816 * 106.74029 * 179.74082 * 21 20 19
23 23 C 1.34816 * 107.04028 * 0.37215 * 22 21 20
24 24 O 1.34199 * 108.67861 * 359.62143 * 23 22 21
25 25 N 1.31043 * 107.09887 * 0.24668 * 19 18 17
26 26 O 1.21290 * 110.04511 * 359.57617 * 25 19 18
27 27 H 1.08998 * 109.47575 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.47224 * 300.00264 * 1 2 3
29 29 H 1.09000 * 109.47162 * 59.99753 * 1 2 3
30 30 H 1.09002 * 109.47224 * 239.99735 * 2 1 3
31 31 H 1.09001 * 109.47296 * 119.99712 * 2 1 3
32 32 H 1.09005 * 109.46642 * 29.99978 * 4 3 2
33 33 H 1.08999 * 109.47493 * 149.99811 * 4 3 2
34 34 H 0.97003 * 120.00082 * 180.02562 * 8 7 5
35 35 H 1.08997 * 109.47073 * 59.99930 * 15 13 3
36 36 H 1.09003 * 109.46843 * 299.99862 * 15 13 3
37 37 H 1.09006 * 109.46819 * 60.00239 * 16 15 13
38 38 H 1.08996 * 109.47407 * 300.00188 * 16 15 13
39 39 H 1.07997 * 126.62769 * 359.96721 * 21 20 19
40 40 H 1.07996 * 126.48398 * 180.26681 * 22 21 20
41 41 H 1.08002 * 125.66397 * 179.89332 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2626 2.0718 -1.2687
5 6 3.6858 1.8349 -1.7038
6 1 4.3429 1.2307 -1.0958
7 6 4.1492 2.3895 -2.8780
8 7 3.3492 3.1257 -3.6181
9 14 5.9136 2.0965 -3.4169
10 1 6.6012 1.2412 -2.4164
11 1 5.9214 1.4169 -4.7373
12 1 6.6206 3.3978 -3.5257
13 6 2.2430 2.0166 1.1671
14 8 2.6477 3.1599 1.1671
15 6 1.9923 1.3060 2.4723
16 6 2.3243 2.2433 3.6352
17 6 2.0730 1.5329 4.9403
18 7 2.9370 0.8151 5.6130
19 6 2.2725 0.3796 6.7094
20 6 2.8182 -0.4729 7.7854
21 6 2.1407 -0.9048 8.8826
22 6 3.0390 -1.6893 9.6312
23 6 4.2114 -1.6911 8.9656
24 8 4.0733 -0.9582 7.8499
25 7 1.0525 0.8519 6.6334
26 8 0.9266 1.5184 5.6278
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3634 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 1.5817 1.6876 -2.0284
33 1 2.0956 3.1410 -1.1385
34 1 3.6751 3.5156 -4.4444
35 1 2.6229 0.4188 2.5299
36 1 0.9445 1.0115 2.5302
37 1 1.6940 3.1308 3.5778
38 1 3.3722 2.5375 3.5770
39 1 1.1114 -0.6908 9.1298
40 1 2.8291 -2.1928 10.5633
41 1 5.1111 -2.2015 9.2762
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000103207235.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:20:49
Heat of formation + Delta-G solvation = 24.702958 kcal
Electronic energy + Delta-G solvation = -25592.114519 eV
Core-core repulsion = 21669.581083 eV
Total energy + Delta-G solvation = -3922.533436 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-46.78360 -43.65441 -40.77966 -37.28217 -36.97838 -35.74116 -34.86427 -34.18902
-32.59403 -31.52830 -30.61920 -29.27101 -26.89401 -25.75020 -24.78103 -24.19267
-23.43796 -22.52666 -21.61339 -19.96273 -19.47637 -19.23151 -18.59937 -18.10696
-17.81744 -17.21162 -17.14583 -16.67502 -16.32568 -16.16783 -15.53878 -15.06258
-14.66592 -14.44256 -14.15978 -14.00506 -13.89634 -13.74699 -13.62510 -13.56106
-13.44922 -13.22377 -13.19618 -12.98886 -12.65935 -12.46040 -12.38928 -12.29780
-12.10297 -11.80336 -11.65729 -11.53262 -11.02473 -10.62603 -10.60170 -9.54130
-9.41424 -8.20423 -6.34426 -0.41718 0.26830 1.24764 1.37786 1.38242
1.40064 1.51292 1.53496 1.70404 1.84407 2.28501 2.39457 2.53581
3.09445 3.14851 3.51518 3.73525 3.87025 3.89397 3.99107 4.04922
4.16004 4.30841 4.43033 4.48225 4.52123 4.64538 4.72869 4.81560
4.87241 4.90993 4.94018 4.99860 5.02865 5.09906 5.27175 5.39545
5.43020 5.60970 5.87740 5.91754 6.09376 6.72604 6.82507 6.86999
7.30561 7.48975 8.86639
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.018459 B = 0.002466 C = 0.002334
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.472295 B =11350.776570 C =11993.854367
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.098 3.902
3 N -0.602 5.602
4 C 0.261 3.739
5 C -0.539 4.539
6 H 0.053 0.947
7 C 0.007 3.993
8 N -0.928 5.928
9 Si 0.965 3.035
10 H -0.267 1.267
11 H -0.271 1.271
12 H -0.282 1.282
13 C 0.503 3.497
14 O -0.590 6.590
15 C -0.123 4.123
16 C -0.008 4.008
17 C 0.217 3.783
18 N -0.493 5.493
19 C 0.234 3.766
20 C 0.003 3.997
21 C -0.140 4.140
22 C -0.221 4.221
23 C 0.000 4.000
24 O -0.178 6.178
25 N -0.372 5.372
26 O 0.093 5.907
27 H 0.091 0.909
28 H 0.065 0.935
29 H 0.039 0.961
30 H 0.070 0.930
31 H 0.099 0.901
32 H 0.021 0.979
33 H 0.001 0.999
34 H 0.266 0.734
35 H 0.112 0.888
36 H 0.128 0.872
37 H 0.126 0.874
38 H 0.113 0.887
39 H 0.166 0.834
40 H 0.190 0.810
41 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.424 -12.580 24.577 27.961
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.024 4.024
3 N -0.333 5.333
4 C 0.140 3.860
5 C -0.578 4.578
6 H 0.071 0.929
7 C -0.192 4.192
8 N -0.568 5.568
9 Si 0.790 3.210
10 H -0.191 1.191
11 H -0.196 1.196
12 H -0.208 1.208
13 C 0.292 3.708
14 O -0.472 6.472
15 C -0.163 4.163
16 C -0.047 4.047
17 C -0.003 4.003
18 N -0.226 5.226
19 C -0.034 4.034
20 C -0.048 4.048
21 C -0.162 4.162
22 C -0.240 4.240
23 C -0.069 4.069
24 O -0.073 6.073
25 N -0.080 5.080
26 O 0.031 5.969
27 H 0.110 0.890
28 H 0.084 0.916
29 H 0.058 0.942
30 H 0.088 0.912
31 H 0.117 0.883
32 H 0.039 0.961
33 H 0.020 0.980
34 H 0.075 0.925
35 H 0.130 0.870
36 H 0.146 0.854
37 H 0.144 0.856
38 H 0.131 0.869
39 H 0.184 0.816
40 H 0.207 0.793
41 H 0.270 0.730
Dipole moment (debyes) X Y Z Total
from point charges -4.232 -12.194 24.836 27.990
hybrid contribution 0.756 0.376 -0.892 1.228
sum -3.476 -11.818 23.944 26.927
Atomic orbital electron populations
1.22163 0.94484 1.03415 1.01988 1.21750 0.95364 0.81420 1.03870
1.48254 1.63672 1.15032 1.06332 1.18722 0.95126 0.91764 0.80422
1.21749 0.97958 1.31716 1.06380 0.92858 1.25830 1.02195 0.94609
0.96557 1.70053 1.37611 1.34347 1.14813 0.85402 0.79310 0.77970
0.78339 1.19141 1.19638 1.20809 1.20907 0.77291 0.86433 0.86204
1.90667 1.48046 1.20393 1.88045 1.21632 1.06380 0.99305 0.89026
1.20038 1.06551 0.97219 0.80924 1.28860 0.80120 0.94118 0.97216
1.72224 1.30606 1.14622 1.05158 1.22539 0.87445 0.99620 0.93845
1.18186 0.85173 1.05011 0.96407 1.22167 1.02036 0.99064 0.92932
1.22223 0.92662 1.04831 1.04252 1.25360 1.02536 0.95192 0.83819
1.84116 1.28855 1.53197 1.41146 1.74960 1.17923 1.11048 1.04037
1.85309 1.36202 1.50790 1.24560 0.89009 0.91623 0.94166 0.91150
0.88285 0.96052 0.98042 0.92477 0.86979 0.85436 0.85587 0.86869
0.81609 0.79259 0.72970
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.75 10.24 71.98 0.74 -3.01 16
2 C 0.10 2.83 5.93 86.38 0.51 3.34 16
3 N -0.60 -24.08 2.46 -826.15 -2.03 -26.11 16
4 C 0.26 13.71 5.16 85.63 0.44 14.15 16
5 C -0.54 -30.62 9.39 25.60 0.24 -30.38 16
6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16
7 C 0.01 0.40 5.46 84.66 0.46 0.86 16
8 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16
9 Si 0.97 44.76 29.54 68.60 2.03 46.79 16
10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
13 C 0.50 18.93 7.67 87.66 0.67 19.61 16
14 O -0.59 -27.89 15.56 -3.03 -0.05 -27.94 16
15 C -0.12 -2.95 4.23 29.85 0.13 -2.83 16
16 C -0.01 -0.19 5.13 29.85 0.15 -0.03 16
17 C 0.22 5.15 7.74 88.35 0.68 5.83 16
18 N -0.49 -13.83 11.58 -302.24 -3.50 -17.33 16
19 C 0.23 6.33 8.06 136.95 1.10 7.43 16
20 C 0.00 0.08 7.26 24.26 0.18 0.25 16
21 C -0.14 -2.49 10.82 22.38 0.24 -2.25 16
22 C -0.22 -2.60 10.89 22.11 0.24 -2.36 16
23 C 0.00 0.00 12.08 67.03 0.81 0.81 16
24 O -0.18 -3.94 10.67 -5.67 -0.06 -4.00 16
25 N -0.37 -9.55 12.18 -58.76 -0.72 -10.27 16
26 O 0.09 2.19 11.29 74.43 0.84 3.03 16
27 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16
28 H 0.06 1.34 7.22 -2.39 -0.02 1.32 16
29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16
30 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16
31 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16
32 H 0.02 1.15 8.07 -2.38 -0.02 1.13 16
33 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16
34 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16
35 H 0.11 2.45 7.40 -2.39 -0.02 2.43 16
36 H 0.13 2.29 7.19 -2.39 -0.02 2.27 16
37 H 0.13 2.63 8.10 -2.38 -0.02 2.61 16
38 H 0.11 2.88 8.10 -2.39 -0.02 2.86 16
39 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16
40 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16
41 H 0.25 0.51 8.06 -2.91 -0.02 0.49 16
Total: -1.00 -78.44 362.54 4.46 -73.99
By element:
Atomic # 1 Polarization: 4.85 SS G_CDS: 1.06 Total: 5.91 kcal
Atomic # 6 Polarization: 4.81 SS G_CDS: 6.60 Total: 11.41 kcal
Atomic # 7 Polarization: -103.23 SS G_CDS: -5.96 Total: -109.19 kcal
Atomic # 8 Polarization: -29.64 SS G_CDS: 0.73 Total: -28.91 kcal
Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -78.44 4.46 -73.99 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103207235.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.692 kcal
(2) G-P(sol) polarization free energy of solvation -78.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds