Wall clock time and date at job start Tue Mar 31 2020 14:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47012 * 2 1 4 4 C 1.36930 * 119.99891 * 274.33535 * 3 2 1 5 5 H 1.08002 * 120.00756 * 337.79933 * 4 3 2 6 6 C 1.38815 * 119.99718 * 157.79260 * 4 3 2 7 7 N 1.31624 * 120.00046 * 7.73999 * 6 4 3 8 8 Si 1.86806 * 120.00076 * 187.73613 * 6 4 3 9 9 H 1.48497 * 109.47118 * 90.00350 * 8 6 4 10 10 H 1.48504 * 109.47026 * 210.00416 * 8 6 4 11 11 H 1.48493 * 109.46996 * 330.00054 * 8 6 4 12 12 C 1.46497 * 119.99963 * 94.34523 * 3 2 1 13 13 C 1.50697 * 109.47267 * 269.99780 * 12 3 2 14 14 O 1.21290 * 119.99929 * 359.97438 * 13 12 3 15 15 N 1.34772 * 120.00309 * 179.97438 * 13 12 3 16 16 C 1.46532 * 124.98012 * 359.97438 * 15 13 12 17 17 C 1.53748 * 105.20159 * 180.02562 * 16 15 13 18 18 C 1.51218 * 104.57874 * 359.97438 * 17 16 15 19 19 C 1.38180 * 130.97282 * 180.02562 * 18 17 16 20 20 C 1.38228 * 120.15436 * 179.97438 * 19 18 17 21 21 C 1.38297 * 119.82484 * 0.02562 * 20 19 18 22 22 N 1.48017 * 119.88501 * 179.97438 * 21 20 19 23 23 O 1.21794 * 120.00442 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99718 * 179.97438 * 22 21 20 25 25 C 1.37838 * 120.22361 * 0.24913 * 21 20 19 26 26 C 1.38558 * 108.56060 * 359.97438 * 18 17 16 27 27 H 1.08999 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47232 * 300.00038 * 1 2 3 29 29 H 1.09001 * 109.46959 * 59.99890 * 1 2 3 30 30 H 1.08999 * 109.46747 * 240.00107 * 2 1 3 31 31 H 1.09001 * 109.46959 * 120.00110 * 2 1 3 32 32 H 0.97002 * 120.00164 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47185 * 149.99289 * 12 3 2 34 34 H 1.09007 * 109.47482 * 29.99059 * 12 3 2 35 35 H 1.08993 * 110.30185 * 61.09850 * 16 15 13 36 36 H 1.09001 * 110.37635 * 299.00078 * 16 15 13 37 37 H 1.09000 * 110.41315 * 241.22293 * 17 16 15 38 38 H 1.09000 * 110.41743 * 118.76562 * 17 16 15 39 39 H 1.08004 * 119.92489 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.08354 * 180.02562 * 20 19 18 41 41 H 1.08001 * 119.85730 * 179.74808 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1620 2.0566 -1.1825 5 1 2.2701 1.5094 -2.1073 6 6 2.1686 3.4447 -1.1925 7 7 2.1904 4.1110 -0.0576 8 14 2.1467 4.3671 -2.8168 9 1 0.7410 4.6184 -3.2244 10 1 2.8558 5.6624 -2.6601 11 1 2.8258 3.5537 -3.8571 12 6 2.3531 2.0398 1.2651 13 6 1.1323 2.7378 1.8065 14 8 0.0856 2.6904 1.1955 15 7 1.2034 3.4149 2.9696 16 6 2.4073 3.5426 3.7951 17 6 1.9810 4.3964 5.0005 18 6 0.5193 4.6971 4.7560 19 6 -0.3930 5.4223 5.4984 20 6 -1.6962 5.5572 5.0576 21 6 -2.0858 4.9635 3.8708 22 7 -3.4810 5.1066 3.3979 23 8 -4.2839 5.7458 4.0537 24 8 -3.8262 4.5850 2.3527 25 6 -1.1806 4.2344 3.1299 26 6 0.1393 4.0994 3.5651 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.1954 5.0809 -0.0646 33 1 3.1444 2.7702 1.0962 34 1 2.6940 1.2944 1.9837 35 1 3.1972 4.0447 3.2366 36 1 2.7453 2.5611 4.1275 37 1 2.5582 5.3204 5.0351 38 1 2.1042 3.8351 5.9267 39 1 -0.0870 5.8857 6.4247 40 1 -2.4082 6.1246 5.6385 41 1 -1.4923 3.7699 2.2060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121028739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:10 Heat of formation + Delta-G solvation = 12.563717 kcal Electronic energy + Delta-G solvation = -27742.092628 eV Core-core repulsion = 23819.032795 eV Total energy + Delta-G solvation = -3923.059833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.36433 -42.03251 -39.72535 -37.76516 -37.69360 -36.99673 -33.84475 -33.55285 -31.86523 -30.98002 -30.67952 -28.56512 -27.22432 -25.71811 -24.37963 -23.99043 -22.62751 -22.31433 -21.05286 -19.86288 -19.57848 -18.80336 -18.72534 -17.81042 -17.39881 -17.13715 -16.77037 -16.13996 -15.89421 -15.70152 -15.39228 -14.91221 -14.74712 -14.47299 -14.01505 -13.95446 -13.56212 -13.52544 -13.14255 -12.99056 -12.91099 -12.87505 -12.74360 -12.66279 -12.60270 -12.40463 -12.35855 -12.26096 -12.09356 -11.90743 -11.58381 -11.36028 -10.89059 -10.37544 -10.31183 -8.88086 -8.86303 -7.97358 -5.34674 -1.27321 0.02376 0.27768 0.32172 1.36005 1.43755 1.46429 1.95563 2.07989 2.41186 2.59518 3.21661 3.30420 3.49068 3.57224 3.65937 3.73661 3.90557 4.03923 4.27560 4.36930 4.41088 4.46508 4.63618 4.67716 4.74731 4.79420 4.85280 4.87903 4.94003 4.98286 5.09401 5.10889 5.16151 5.22198 5.34950 5.38486 5.54425 5.60548 5.77594 6.26138 6.44181 6.57475 7.08011 7.59823 7.81662 8.17300 9.06115 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.012406 B = 0.004833 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.467822 B = 5792.189818 C = 6321.775545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 N -0.595 5.595 4 C -0.244 4.244 5 H 0.074 0.926 6 C -0.040 4.040 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.311 1.311 10 H -0.290 1.290 11 H -0.264 1.264 12 C 0.176 3.824 13 C 0.531 3.469 14 O -0.556 6.556 15 N -0.565 5.565 16 C 0.091 3.909 17 C -0.074 4.074 18 C -0.084 4.084 19 C -0.055 4.055 20 C -0.083 4.083 21 C -0.037 4.037 22 N 0.032 4.968 23 O -0.117 6.117 24 O -0.251 6.251 25 C -0.121 4.121 26 C 0.147 3.853 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.018 0.982 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.243 0.757 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.139 0.861 39 H 0.206 0.794 40 H 0.182 0.818 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 0.953 18.756 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 N -0.315 5.315 4 C -0.374 4.374 5 H 0.092 0.908 6 C -0.234 4.234 7 N -0.569 5.569 8 Si 0.789 3.211 9 H -0.240 1.240 10 H -0.217 1.217 11 H -0.188 1.188 12 C 0.046 3.954 13 C 0.323 3.677 14 O -0.431 6.431 15 N -0.289 5.289 16 C -0.029 4.029 17 C -0.111 4.111 18 C -0.088 4.088 19 C -0.074 4.074 20 C -0.103 4.103 21 C -0.121 4.121 22 N 0.547 4.453 23 O -0.349 6.349 24 O -0.445 6.445 25 C -0.144 4.144 26 C 0.047 3.953 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.157 0.843 39 H 0.223 0.777 40 H 0.200 0.800 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.923 0.712 18.250 18.916 hybrid contribution -1.374 0.765 -2.150 2.663 sum 3.550 1.477 16.100 16.553 Atomic orbital electron populations 1.22186 0.99538 0.99380 0.99953 1.21078 0.91965 0.85003 1.00459 1.44119 1.74049 1.11056 1.02239 1.19484 1.41445 0.89200 0.87283 0.90809 1.25461 1.01255 0.97392 0.99298 1.69740 1.56753 1.05742 1.24624 0.85386 0.76254 0.78339 0.81135 1.23959 1.21679 1.18828 1.20750 0.92982 0.95552 0.86163 1.22799 0.91776 0.76979 0.76181 1.90515 1.33760 1.61921 1.56905 1.46714 1.10208 1.49412 1.22546 1.22477 0.86440 1.02870 0.91158 1.21404 0.88253 1.02336 0.99073 1.21092 0.98973 0.96414 0.92299 1.20893 0.88906 0.96536 1.01021 1.21287 0.98991 0.98094 0.91936 1.20881 0.80381 1.10144 1.00707 1.43933 1.04060 0.97714 0.99599 1.94378 1.48948 1.36801 1.54748 1.94625 1.84449 1.51875 1.13570 1.20401 0.92697 1.00375 1.00907 1.18600 0.88024 0.94579 0.94053 0.91833 0.95154 0.96294 0.92689 0.91337 0.94699 0.87328 0.91414 0.89762 0.87627 0.85702 0.84335 0.77745 0.80036 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 9.65 71.98 0.69 -5.71 16 2 C 0.14 5.64 6.44 86.38 0.56 6.20 16 3 N -0.59 -28.51 2.07 -706.34 -1.46 -29.97 16 4 C -0.24 -13.09 9.70 84.04 0.81 -12.27 16 5 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 6 C -0.04 -2.18 5.41 84.86 0.46 -1.72 16 7 N -0.92 -50.33 8.21 21.65 0.18 -50.16 16 8 Si 0.96 46.36 29.56 68.60 2.03 48.39 16 9 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 12 C 0.18 7.56 4.61 85.63 0.39 7.95 16 13 C 0.53 24.26 5.75 87.66 0.50 24.76 16 14 O -0.56 -31.02 12.06 -3.06 -0.04 -31.05 16 15 N -0.57 -20.27 3.13 -629.48 -1.97 -22.24 16 16 C 0.09 2.02 6.67 86.62 0.58 2.59 16 17 C -0.07 -0.99 6.94 30.26 0.21 -0.78 16 18 C -0.08 -1.80 6.23 -19.64 -0.12 -1.92 16 19 C -0.06 -0.87 10.03 22.25 0.22 -0.65 16 20 C -0.08 -1.83 9.56 22.28 0.21 -1.62 16 21 C -0.04 -1.29 6.84 36.30 0.25 -1.04 16 22 N 0.03 1.26 4.45 -46.65 -0.21 1.05 16 23 O -0.12 -3.98 18.44 18.89 0.35 -3.63 16 24 O -0.25 -11.53 18.43 18.89 0.35 -11.18 16 25 C -0.12 -4.94 8.97 22.51 0.20 -4.74 16 26 C 0.15 5.08 6.62 38.28 0.25 5.33 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.03 1.41 6.39 -2.39 -0.02 1.40 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 2.09 8.07 -2.39 -0.02 2.07 16 31 H 0.07 2.31 7.84 -2.39 -0.02 2.29 16 32 H 0.24 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.11 5.02 6.24 -2.39 -0.01 5.00 16 34 H 0.07 2.36 7.86 -2.38 -0.02 2.34 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.21 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.18 2.87 7.61 -2.91 -0.02 2.85 16 41 H 0.11 5.86 5.81 -2.91 -0.02 5.85 16 Total: -1.00 -79.86 343.96 5.52 -74.34 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.06 Total: 8.06 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.23 Total: 16.39 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -3.46 Total: -101.32 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: 0.66 Total: -45.87 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -79.86 5.52 -74.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121028739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.908 kcal (2) G-P(sol) polarization free energy of solvation -79.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds