Wall clock time and date at job start Tue Mar 31 2020 14:10:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 N 1.46501 * 109.47007 * 2 1
4 4 C 1.36451 * 127.16405 * 89.97831 * 3 2 1
5 5 S 1.76206 * 126.37535 * 0.02562 * 4 3 2
6 6 C 1.81000 * 99.99929 * 180.02562 * 5 4 3
7 7 C 1.52999 * 109.46638 * 179.97438 * 6 5 4
8 8 C 1.53006 * 109.46997 * 180.02562 * 7 6 5
9 9 C 1.50699 * 109.47240 * 180.02562 * 8 7 6
10 10 H 1.08003 * 119.99962 * 0.02562 * 9 8 7
11 11 C 1.37873 * 119.99861 * 179.97438 * 9 8 7
12 12 N 1.31522 * 120.00243 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 119.99980 * 179.97438 * 11 9 8
14 14 H 1.48493 * 109.47195 * 0.02562 * 13 11 9
15 15 H 1.48505 * 109.46997 * 120.00167 * 13 11 9
16 16 H 1.48500 * 109.47074 * 240.00161 * 13 11 9
17 17 N 1.31568 * 107.25087 * 180.27999 * 4 3 2
18 18 N 1.28515 * 110.06602 * 359.55952 * 17 4 3
19 19 C 1.31312 * 109.93971 * 0.45260 * 18 17 4
20 20 C 1.47730 * 126.46557 * 179.73240 * 19 18 17
21 21 C 1.39760 * 120.13322 * 359.71911 * 20 19 18
22 22 N 1.31909 * 119.83671 * 179.78204 * 21 20 19
23 23 C 1.32284 * 120.11974 * 0.47662 * 22 21 20
24 24 C 1.38399 * 120.27651 * 359.77470 * 23 22 21
25 25 N 1.32029 * 120.15597 * 359.97438 * 24 23 22
26 26 H 1.08994 * 109.46878 * 60.00048 * 1 2 3
27 27 H 1.08989 * 109.46658 * 179.97438 * 1 2 3
28 28 H 1.09002 * 109.46651 * 299.99944 * 1 2 3
29 29 H 1.08995 * 109.46938 * 240.00334 * 2 1 3
30 30 H 1.08998 * 109.47320 * 120.00111 * 2 1 3
31 31 H 1.09000 * 109.47216 * 300.00172 * 6 5 4
32 32 H 1.09001 * 109.46620 * 60.00275 * 6 5 4
33 33 H 1.09000 * 109.47486 * 300.00041 * 7 6 5
34 34 H 1.09001 * 109.47362 * 60.00764 * 7 6 5
35 35 H 1.09000 * 109.46866 * 300.00212 * 8 7 6
36 36 H 1.08996 * 109.47261 * 59.99820 * 8 7 6
37 37 H 0.96992 * 120.00032 * 179.97438 * 12 11 9
38 38 H 1.08000 * 120.08227 * 0.02562 * 21 20 19
39 39 H 1.07991 * 119.86177 * 179.75531 * 23 22 21
40 40 H 1.07996 * 119.92050 * 179.97438 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2928 2.1585 1.0874
5 16 2.1263 1.6878 2.7772
6 6 2.6650 3.2160 3.5837
7 6 2.6022 3.0407 5.1023
8 6 3.0569 4.3327 5.7842
9 6 2.9956 4.1598 7.2799
10 1 2.6657 3.2221 7.7021
11 6 3.3617 5.1985 8.1095
12 7 3.7639 6.3403 7.5954
13 14 3.2850 4.9845 9.9636
14 1 2.8028 3.6171 10.2846
15 1 4.6393 5.1795 10.5408
16 1 2.3525 5.9865 10.5394
17 7 2.6994 3.3268 0.6393
18 7 2.7062 3.3281 -0.6458
19 6 2.2955 2.1653 -1.0970
20 6 2.1572 1.7726 -2.5144
21 6 2.4722 2.6815 -3.5283
22 7 2.3507 2.3232 -4.7919
23 6 1.9226 1.1100 -5.0997
24 6 1.6042 0.2078 -4.0996
25 7 1.7266 0.5532 -2.8312
26 1 -0.3633 0.5138 -0.8899
27 1 -0.3632 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 1.8934 -0.5138 -0.8900
30 1 1.8934 -0.5138 0.8899
31 1 3.6887 3.4427 3.2858
32 1 2.0100 4.0346 3.2854
33 1 1.5783 2.8142 5.3999
34 1 3.2569 2.2220 5.4010
35 1 4.0807 4.5596 5.4866
36 1 2.4020 5.1512 5.4855
37 1 4.0211 7.0711 8.1790
38 1 2.8182 3.6734 -3.2777
39 1 1.8209 0.8224 -6.1356
40 1 1.2549 -0.7811 -4.3574
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000124316547.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:10:40
Heat of formation + Delta-G solvation = 111.767717 kcal
Electronic energy + Delta-G solvation = -22856.255849 eV
Core-core repulsion = 19412.543447 eV
Total energy + Delta-G solvation = -3443.712403 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.116 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-43.03273 -41.36220 -36.09749 -34.79107 -34.52417 -33.12615 -32.07502 -30.87314
-30.08574 -27.54832 -25.72099 -25.15003 -24.26829 -23.49284 -22.50556 -21.54705
-20.26483 -18.20862 -17.95947 -17.41302 -16.82571 -16.61953 -16.24378 -15.98687
-15.17334 -14.92546 -14.66654 -14.61969 -14.43002 -13.93837 -13.44808 -13.34046
-12.76815 -12.54239 -12.24589 -12.03538 -11.88520 -11.84650 -11.71727 -11.63300
-11.20304 -10.94369 -10.80676 -10.72213 -10.56262 -10.49856 -10.24774 -9.86540
-9.69637 -9.40538 -9.39129 -9.12249 -8.37647 -7.62638 -6.01862 -4.05112
-0.09746 0.51429 1.03506 1.57926 2.19736 2.38063 2.54874 3.11260
3.27836 3.30709 3.38274 3.42037 3.71097 3.84328 4.10250 4.33987
4.44551 4.55739 4.62074 4.64786 4.89677 4.99307 5.08227 5.18445
5.28903 5.33874 5.45827 5.47610 5.57569 5.71608 5.77976 5.81184
6.09152 6.39080 6.44110 6.61650 6.65922 6.93640 7.16304 7.63150
7.73887 7.96546 8.36169 8.36475 9.01448 9.59156 11.09297
Molecular weight = 319.12amu
Principal moments of inertia in cm(-1)
A = 0.033644 B = 0.002213 C = 0.002094
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 832.033425 B =12649.778096 C =13368.639511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.101 3.899
3 N -0.443 5.443
4 C 0.180 3.820
5 S -0.015 6.015
6 C -0.090 4.090
7 C -0.097 4.097
8 C 0.029 3.971
9 C -0.522 4.522
10 H 0.057 0.943
11 C 0.057 3.943
12 N -0.893 5.893
13 Si 0.893 3.107
14 H -0.273 1.273
15 H -0.284 1.284
16 H -0.284 1.284
17 N -0.282 5.282
18 N -0.248 5.248
19 C 0.203 3.797
20 C 0.161 3.839
21 C 0.098 3.902
22 N -0.430 5.430
23 C 0.053 3.947
24 C 0.059 3.941
25 N -0.435 5.435
26 H 0.061 0.939
27 H 0.081 0.919
28 H 0.065 0.935
29 H 0.115 0.885
30 H 0.096 0.904
31 H 0.095 0.905
32 H 0.095 0.905
33 H 0.060 0.940
34 H 0.060 0.940
35 H 0.021 0.979
36 H 0.021 0.979
37 H 0.261 0.739
38 H 0.185 0.815
39 H 0.175 0.825
40 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.292 -16.542 -25.063 30.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.021 4.021
3 N -0.136 5.136
4 C -0.194 4.194
5 S 0.216 5.784
6 C -0.238 4.238
7 C -0.137 4.137
8 C -0.010 4.010
9 C -0.560 4.560
10 H 0.075 0.925
11 C -0.145 4.145
12 N -0.532 5.532
13 Si 0.721 3.279
14 H -0.197 1.197
15 H -0.210 1.210
16 H -0.210 1.210
17 N -0.129 5.129
18 N -0.092 5.092
19 C -0.064 4.064
20 C 0.020 3.980
21 C -0.064 4.064
22 N -0.144 5.144
23 C -0.107 4.107
24 C -0.102 4.102
25 N -0.152 5.152
26 H 0.080 0.920
27 H 0.099 0.901
28 H 0.085 0.915
29 H 0.133 0.867
30 H 0.114 0.886
31 H 0.113 0.887
32 H 0.113 0.887
33 H 0.078 0.922
34 H 0.078 0.922
35 H 0.039 0.961
36 H 0.039 0.961
37 H 0.071 0.929
38 H 0.202 0.798
39 H 0.192 0.808
40 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -6.109 -16.031 -24.519 29.924
hybrid contribution -0.084 -0.249 0.383 0.465
sum -6.193 -16.280 -24.136 29.764
Atomic orbital electron populations
1.22052 0.93366 1.03451 1.03125 1.22153 0.96414 0.77818 1.05709
1.46529 1.48896 1.14008 1.04124 1.27200 1.03913 0.91582 0.96671
1.85604 1.83241 1.24350 0.85198 1.23975 1.05579 0.94235 1.00043
1.21562 1.01749 1.02509 0.87905 1.19097 0.96949 0.90322 0.94656
1.21226 1.44510 0.99096 0.91214 0.92480 1.25029 0.95256 0.95274
0.98906 1.69976 1.44703 1.03465 1.35032 0.86520 0.77669 0.78151
0.85562 1.19718 1.20998 1.20993 1.74906 1.20051 1.15894 1.02032
1.74276 1.15539 1.15732 1.03660 1.22037 1.07259 0.89754 0.87335
1.19067 0.97943 0.91406 0.89585 1.23841 0.94444 1.00937 0.87150
1.68599 1.09283 1.17100 1.19413 1.23954 0.94852 0.89932 1.02005
1.23751 0.96998 1.01525 0.87938 1.68330 1.10005 1.15775 1.21077
0.92002 0.90056 0.91549 0.86691 0.88594 0.88676 0.88662 0.92158
0.92160 0.96077 0.96071 0.92948 0.79837 0.80776 0.80586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.30 10.24 37.16 0.38 -0.92 16
2 C 0.10 0.93 6.23 -4.04 -0.03 0.90 16
3 N -0.44 -5.71 2.83 -114.08 -0.32 -6.04 16
4 C 0.18 2.75 8.07 -88.18 -0.71 2.04 16
5 S -0.01 -0.21 21.79 -107.50 -2.34 -2.55 16
6 C -0.09 -1.55 5.23 37.16 0.19 -1.36 16
7 C -0.10 -1.92 5.16 -26.73 -0.14 -2.06 16
8 C 0.03 0.73 4.97 -27.88 -0.14 0.59 16
9 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16
10 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16
11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
12 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16
13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16
14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
17 N -0.28 -4.95 11.59 30.71 0.36 -4.59 16
18 N -0.25 -3.99 11.88 32.59 0.39 -3.60 16
19 C 0.20 2.74 7.83 -153.69 -1.20 1.54 16
20 C 0.16 1.72 6.75 -82.85 -0.56 1.16 16
21 C 0.10 0.97 10.89 -16.95 -0.18 0.79 16
22 N -0.43 -3.81 10.49 -12.72 -0.13 -3.94 16
23 C 0.05 0.30 11.21 -17.30 -0.19 0.11 16
24 C 0.06 0.32 11.22 -17.41 -0.20 0.13 16
25 N -0.44 -3.74 8.02 -9.67 -0.08 -3.82 16
26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
27 H 0.08 0.46 8.14 -51.94 -0.42 0.04 16
28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.12 0.95 6.29 -51.93 -0.33 0.62 16
30 H 0.10 0.80 7.85 -51.93 -0.41 0.40 16
31 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16
32 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16
33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
38 H 0.18 1.73 7.87 -52.49 -0.41 1.31 16
39 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16
40 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16
LS Contribution 360.57 15.07 5.43 5.43
Total: -1.00 -33.36 360.57 -9.51 -42.87
By element:
Atomic # 1 Polarization: 1.50 SS G_CDS: -5.34 Total: -3.84 kcal
Atomic # 6 Polarization: -7.21 SS G_CDS: -3.19 Total: -10.39 kcal
Atomic # 7 Polarization: -48.94 SS G_CDS: 0.95 Total: -47.99 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal
Atomic # 16 Polarization: -0.21 SS G_CDS: -2.34 Total: -2.55 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -33.36 -9.51 -42.87 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000124316547.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 154.639 kcal
(2) G-P(sol) polarization free energy of solvation -33.361 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal
(6) G-S(sol) free energy of system = (1) + (5) 111.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds