Wall clock time and date at job start Tue Mar 31 2020 13:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47136 * 2 1 4 4 C 1.50707 * 109.46754 * 240.00210 * 2 1 3 5 5 H 1.08000 * 119.99881 * 245.26446 * 4 2 1 6 6 C 1.37875 * 120.00069 * 65.27186 * 4 2 1 7 7 N 1.31515 * 119.99978 * 5.11161 * 6 4 2 8 8 Si 1.86799 * 119.99831 * 185.10910 * 6 4 2 9 9 H 1.48506 * 109.46851 * 94.99892 * 8 6 4 10 10 H 1.48501 * 109.47018 * 214.99581 * 8 6 4 11 11 H 1.48499 * 109.47384 * 335.00076 * 8 6 4 12 12 N 1.46498 * 109.47268 * 120.00513 * 2 1 3 13 13 C 1.34779 * 119.99921 * 274.99717 * 12 2 1 14 14 O 1.21594 * 119.99612 * 0.02562 * 13 12 2 15 15 N 1.34771 * 120.00350 * 179.97438 * 13 12 2 16 16 C 1.40139 * 120.00368 * 184.55281 * 15 13 12 17 17 C 1.38853 * 119.97224 * 144.88827 * 16 15 13 18 18 C 1.38258 * 120.18425 * 179.97438 * 17 16 15 19 19 C 1.38402 * 119.96334 * 0.02562 * 18 17 16 20 20 C 1.39406 * 119.98312 * 0.02562 * 19 18 17 21 21 C 1.38452 * 120.04672 * 0.02562 * 20 19 18 22 22 N 1.40219 * 119.26995 * 179.97438 * 20 19 18 23 23 C 1.35081 * 119.00516 * 15.49881 * 22 20 19 24 24 O 1.21291 * 120.12990 * 181.61853 * 23 22 20 25 25 C 1.50751 * 119.73661 * 1.88659 * 23 22 20 26 26 H 1.08998 * 109.44484 * 88.48467 * 25 23 22 27 27 C 1.52994 * 109.44455 * 208.38624 * 25 23 22 28 28 O 1.36089 * 120.58391 * 180.02562 * 19 18 17 29 29 H 1.09005 * 109.46806 * 294.97866 * 1 2 3 30 30 H 1.09005 * 109.47053 * 54.97386 * 1 2 3 31 31 H 1.08995 * 109.47145 * 174.97858 * 1 2 3 32 32 H 0.97002 * 120.00082 * 180.02562 * 7 6 4 33 33 H 0.97001 * 120.00261 * 94.99183 * 12 2 1 34 34 H 0.96998 * 119.99836 * 4.56100 * 15 13 12 35 35 H 1.08003 * 119.91267 * 359.97438 * 17 16 15 36 36 H 1.07998 * 120.02226 * 179.97438 * 18 17 16 37 37 H 1.08000 * 120.11701 * 179.97438 * 21 20 19 38 38 H 0.97001 * 120.49667 * 195.46584 * 22 20 19 39 39 H 1.09000 * 109.47121 * 60.00393 * 27 25 23 40 40 H 1.09009 * 109.47281 * 180.02562 * 27 25 23 41 41 H 1.09000 * 109.47597 * 300.00043 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5812 -1.6354 -1.1338 6 6 1.7911 -0.1793 -2.4799 7 7 1.2119 0.9958 -2.5942 8 14 2.2872 -1.1290 -4.0100 9 1 1.1252 -1.9089 -4.5070 10 1 2.7308 -0.1780 -5.0607 11 1 3.3998 -2.0552 -3.6789 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8576 1.1613 2.4118 15 7 2.5959 -0.6539 3.4576 16 6 2.6397 0.0187 4.6863 17 6 2.3786 -0.6697 5.8636 18 6 2.4211 -0.0106 7.0782 19 6 2.7240 1.3391 7.1221 20 6 2.9855 2.0331 5.9417 21 6 2.9419 1.3733 4.7253 22 7 3.2903 3.4004 6.0035 23 6 3.6333 3.9420 7.1925 24 8 3.8724 5.1282 7.2749 25 6 3.7235 3.0650 8.4154 26 1 4.7290 2.6510 8.4916 27 6 3.4204 3.8975 9.6626 28 8 2.7698 2.0002 8.3107 29 1 -0.3633 0.4340 0.9316 30 1 -0.3633 0.5899 -0.8416 31 1 -0.3633 -1.0237 -0.0899 32 1 1.0419 1.3693 -3.4732 33 1 2.2490 -1.6319 1.1525 34 1 2.8888 -1.5767 3.3992 35 1 2.1417 -1.7229 5.8304 36 1 2.2172 -0.5485 7.9923 37 1 3.1439 1.9099 3.8101 38 1 3.2558 3.9490 5.2043 39 1 2.4156 4.3131 9.5867 40 1 3.4860 3.2639 10.5473 41 1 4.1440 4.7088 9.7428 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154334521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:12 Heat of formation + Delta-G solvation = -93.637755 kcal Electronic energy + Delta-G solvation = -26142.618297 eV Core-core repulsion = 22214.953222 eV Total energy + Delta-G solvation = -3927.665074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.58364 -41.39933 -39.89826 -38.66696 -36.94879 -36.42718 -35.16274 -34.28334 -32.82044 -31.26542 -30.78530 -28.93301 -27.30114 -25.98785 -24.51206 -24.25477 -23.01400 -21.61401 -20.69564 -20.04923 -19.96167 -19.06850 -18.32524 -17.92482 -17.53469 -17.07333 -16.76972 -16.34163 -15.94661 -15.82795 -15.61669 -15.47397 -15.15387 -14.72096 -14.42446 -14.35278 -14.19181 -13.79759 -13.67140 -13.22690 -13.15464 -13.03280 -12.91210 -12.69896 -12.45256 -12.40198 -12.32322 -12.14680 -12.09329 -11.28946 -11.14506 -11.10795 -10.73911 -10.61177 -9.83162 -9.46259 -8.69985 -8.19817 -6.34502 -0.03567 0.23535 1.14849 1.45677 1.45923 1.56464 1.60303 1.77024 2.14721 2.22177 2.42170 2.73276 2.87730 3.13538 3.43287 3.66110 3.74461 3.89547 4.15095 4.19412 4.29963 4.63405 4.68265 4.75779 4.77265 4.87402 4.89421 4.97711 5.06304 5.15749 5.25547 5.33296 5.39265 5.41190 5.59457 5.62695 5.69452 5.78773 5.85704 6.02701 6.25113 6.27670 6.59705 6.74816 7.24786 7.34247 7.68292 8.89177 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.026325 B = 0.002557 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.362259 B =10945.733684 C =11608.785419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.288 3.712 3 H 0.002 0.998 4 C -0.544 4.544 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.260 1.260 12 N -0.712 5.712 13 C 0.691 3.309 14 O -0.626 6.626 15 N -0.671 5.671 16 C 0.168 3.832 17 C -0.121 4.121 18 C -0.075 4.075 19 C 0.047 3.953 20 C 0.096 3.904 21 C -0.145 4.145 22 N -0.662 5.662 23 C 0.487 3.513 24 O -0.544 6.544 25 C 0.078 3.922 26 H 0.129 0.871 27 C -0.130 4.130 28 O -0.301 6.301 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.426 0.574 35 H 0.176 0.824 36 H 0.178 0.822 37 H 0.121 0.879 38 H 0.414 0.586 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -6.854 23.418 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.184 3.816 3 H 0.020 0.980 4 C -0.582 4.582 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.198 1.198 10 H -0.216 1.216 11 H -0.184 1.184 12 N -0.365 5.365 13 C 0.392 3.608 14 O -0.507 6.507 15 N -0.321 5.321 16 C 0.072 3.928 17 C -0.142 4.142 18 C -0.094 4.094 19 C 0.000 4.000 20 C 0.000 4.000 21 C -0.168 4.168 22 N -0.307 5.307 23 C 0.275 3.725 24 O -0.421 6.421 25 C 0.019 3.981 26 H 0.146 0.854 27 C -0.188 4.188 28 O -0.216 6.216 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.266 0.734 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.139 0.861 38 H 0.252 0.748 39 H 0.078 0.922 40 H 0.125 0.875 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.090 -5.129 23.611 24.692 hybrid contribution 0.342 -0.028 -2.225 2.252 sum 5.433 -5.157 21.385 22.659 Atomic orbital electron populations 1.21860 0.98477 0.99936 0.98446 1.18247 0.90693 0.91950 0.80749 0.97968 1.21535 1.36732 1.09269 0.90694 0.90485 1.25809 0.94919 0.95465 1.02438 1.70116 1.43276 1.17665 1.24843 0.85342 0.78778 0.78168 0.78101 1.19820 1.21592 1.18401 1.45414 1.68701 1.14051 1.08299 1.16280 0.78392 0.84956 0.81200 1.90862 1.58773 1.16295 1.84751 1.42427 1.67466 1.16991 1.05250 1.17469 0.98854 0.91104 0.85404 1.21072 1.01935 1.02346 0.88814 1.20636 0.99811 0.89174 0.99755 1.18776 1.05963 0.92884 0.82354 1.17935 1.04313 0.83436 0.94325 1.20681 1.04530 0.95499 0.96124 1.43911 1.66213 1.08597 1.12004 1.22206 0.75241 0.89217 0.85825 1.90755 1.49168 1.16647 1.85528 1.22900 0.95619 0.86210 0.93324 0.85410 1.21747 1.03522 0.99456 0.94031 1.86339 1.57508 1.46545 1.31255 0.96515 0.93217 0.93412 0.92627 0.75926 0.73432 0.80692 0.80444 0.86149 0.74755 0.92206 0.87539 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 9.26 71.98 0.67 -5.60 16 2 C 0.29 14.41 2.43 44.25 0.11 14.51 16 3 H 0.00 0.14 7.56 -2.39 -0.02 0.12 16 4 C -0.54 -27.79 8.67 25.60 0.22 -27.57 16 5 H 0.08 3.61 7.72 -2.91 -0.02 3.59 16 6 C 0.01 0.73 5.29 84.65 0.45 1.18 16 7 N -0.92 -52.77 11.98 21.45 0.26 -52.52 16 8 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 12 N -0.71 -27.61 5.07 -461.39 -2.34 -29.95 16 13 C 0.69 26.22 8.37 179.06 1.50 27.72 16 14 O -0.63 -29.74 13.44 -4.01 -0.05 -29.80 16 15 N -0.67 -17.32 5.35 -317.05 -1.70 -19.02 16 16 C 0.17 4.21 6.30 38.10 0.24 4.45 16 17 C -0.12 -1.97 9.96 22.42 0.22 -1.74 16 18 C -0.07 -1.17 9.99 22.31 0.22 -0.95 16 19 C 0.05 1.02 6.44 22.59 0.15 1.16 16 20 C 0.10 2.54 6.54 38.13 0.25 2.79 16 21 C -0.15 -4.36 8.59 22.47 0.19 -4.17 16 22 N -0.66 -17.85 5.47 -302.74 -1.66 -19.51 16 23 C 0.49 12.48 7.64 87.63 0.67 13.15 16 24 O -0.54 -16.77 17.01 -3.06 -0.05 -16.83 16 25 C 0.08 1.41 3.69 29.86 0.11 1.52 16 26 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 27 C -0.13 -1.78 9.14 71.98 0.66 -1.12 16 28 O -0.30 -5.98 10.11 -94.56 -0.96 -6.94 16 29 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.05 2.67 6.83 -2.38 -0.02 2.65 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.41 12.53 8.54 -92.71 -0.79 11.74 16 34 H 0.43 7.22 8.84 -92.71 -0.82 6.40 16 35 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.12 4.46 6.22 -2.91 -0.02 4.44 16 38 H 0.41 11.36 8.89 -92.71 -0.82 10.54 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.09 1.24 7.86 -2.39 -0.02 1.22 16 Total: -1.00 -74.09 349.21 -0.14 -74.23 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -1.32 Total: 31.83 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 5.65 Total: 25.34 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -5.44 Total: -120.99 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -1.06 Total: -53.56 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -74.09 -0.14 -74.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154334521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.406 kcal (2) G-P(sol) polarization free energy of solvation -74.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds