Wall clock time and date at job start Tue Mar 31 2020 12:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47415 * 2 1 4 4 H 1.09003 * 109.47084 * 54.99635 * 3 2 1 5 5 C 1.50700 * 109.47705 * 175.00249 * 3 2 1 6 6 H 1.07993 * 120.00531 * 119.99637 * 5 3 2 7 7 C 1.37879 * 119.99531 * 300.00276 * 5 3 2 8 8 N 1.31514 * 119.99993 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99951 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47051 * 59.99876 * 9 7 5 11 11 H 1.48497 * 109.46983 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46906 * 299.99615 * 9 7 5 13 13 N 1.46502 * 109.47064 * 295.00261 * 3 2 1 14 14 C 1.34781 * 120.00053 * 84.99655 * 13 3 2 15 15 O 1.21585 * 119.99693 * 0.02562 * 14 13 3 16 16 N 1.34781 * 119.99873 * 179.97438 * 14 13 3 17 17 C 1.40139 * 119.99826 * 185.31514 * 16 14 13 18 18 C 1.38856 * 119.97380 * 213.23768 * 17 16 14 19 19 C 1.38260 * 120.18204 * 179.97438 * 18 17 16 20 20 C 1.38391 * 119.96653 * 0.06007 * 19 18 17 21 21 C 1.39409 * 119.98451 * 0.02562 * 20 19 18 22 22 C 1.38457 * 120.04415 * 359.92699 * 21 20 19 23 23 N 1.40210 * 119.27894 * 179.90645 * 21 20 19 24 24 C 1.35084 * 119.00527 * 15.49754 * 23 21 20 25 25 O 1.21290 * 120.13703 * 181.68900 * 24 23 21 26 26 C 1.50760 * 119.72946 * 1.66916 * 24 23 21 27 27 O 1.36091 * 120.58745 * 180.02562 * 20 19 18 28 28 H 1.09003 * 109.47186 * 299.99772 * 1 2 3 29 29 H 1.09001 * 109.47423 * 60.00301 * 1 2 3 30 30 H 1.09007 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46842 * 239.99938 * 2 1 3 32 32 H 1.09001 * 109.47192 * 120.00198 * 2 1 3 33 33 H 0.97003 * 119.99747 * 180.02562 * 8 7 5 34 34 H 0.97000 * 119.99995 * 264.99600 * 13 3 2 35 35 H 0.96997 * 119.99540 * 5.31682 * 16 14 13 36 36 H 1.07997 * 119.90751 * 0.02562 * 18 17 16 37 37 H 1.07996 * 120.01372 * 180.34187 * 19 18 17 38 38 H 1.07998 * 120.11259 * 180.02562 * 22 21 20 39 39 H 0.97002 * 120.50092 * 195.47432 * 23 21 20 40 40 H 1.08999 * 109.43733 * 208.61206 * 26 24 23 41 41 H 1.08999 * 109.41583 * 88.69445 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4061 0.3373 2.1732 9 14 6.0050 0.8799 1.3811 10 1 6.5005 2.2798 1.3808 11 1 6.3978 0.2166 2.6503 12 1 6.5966 0.1451 0.2343 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3412 2.6325 -0.4317 16 7 0.0787 3.2674 -2.5184 17 6 -1.1407 3.9529 -2.6021 18 6 -1.8439 3.9740 -3.7993 19 6 -3.0476 4.6486 -3.8866 20 6 -3.5535 5.3060 -2.7788 21 6 -2.8490 5.2881 -1.5760 22 6 -1.6440 4.6117 -1.4885 23 7 -3.3742 5.9607 -0.4636 24 6 -4.6719 6.3358 -0.4775 25 8 -5.1396 6.9457 0.4608 26 6 -5.5363 5.9937 -1.6644 27 8 -4.7374 5.9734 -2.8504 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.8292 -0.0605 2.9502 34 1 2.2719 2.1231 -1.9978 35 1 0.6663 3.2268 -3.2891 36 1 -1.4499 3.4614 -4.6643 37 1 -3.5950 4.6586 -4.8175 38 1 -1.0975 4.5968 -0.5571 39 1 -2.8143 6.1535 0.3047 40 1 -6.3217 6.7422 -1.7688 41 1 -5.9873 5.0129 -1.5134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156982193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:19 Heat of formation + Delta-G solvation = -91.462140 kcal Electronic energy + Delta-G solvation = -26509.655973 eV Core-core repulsion = 22582.085240 eV Total energy + Delta-G solvation = -3927.570733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48665 -41.39965 -39.87592 -38.66561 -37.09508 -36.39457 -35.11590 -34.25425 -32.69019 -31.05115 -30.49758 -29.01705 -28.18022 -25.19936 -24.41630 -24.24689 -22.51285 -21.35242 -20.84380 -19.93324 -19.89143 -19.04437 -18.24536 -17.91200 -17.49210 -17.10466 -16.87112 -16.41236 -16.10504 -15.89316 -15.60495 -15.45482 -15.14553 -14.71644 -14.56444 -14.27551 -14.17524 -14.00316 -13.66837 -13.50631 -13.16103 -12.89052 -12.73493 -12.64851 -12.26821 -12.19428 -12.08936 -12.04154 -11.57758 -11.38245 -11.08809 -10.98192 -10.72806 -10.52187 -9.67495 -9.43518 -8.66951 -8.15345 -6.32294 -0.00293 0.25617 1.17458 1.46014 1.47370 1.54924 1.66986 1.78972 2.18811 2.35527 2.43842 2.78019 2.94549 3.14576 3.46647 3.68185 4.02802 4.15606 4.18465 4.22244 4.40795 4.51439 4.59405 4.71238 4.78502 4.79315 4.99895 5.08293 5.22638 5.30555 5.36336 5.41191 5.45924 5.55810 5.61916 5.70533 5.78018 5.82735 5.89479 6.18567 6.27160 6.31075 6.61399 6.76173 7.28566 7.36516 7.74291 8.89661 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.002855 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.023285 B = 9804.101615 C =10281.045240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.298 3.702 4 H -0.002 1.002 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.714 5.714 14 C 0.691 3.309 15 O -0.613 6.613 16 N -0.675 5.675 17 C 0.174 3.826 18 C -0.125 4.125 19 C -0.073 4.073 20 C 0.044 3.956 21 C 0.100 3.900 22 C -0.146 4.146 23 N -0.661 5.661 24 C 0.486 3.514 25 O -0.554 6.554 26 C 0.055 3.945 27 O -0.302 6.302 28 H 0.022 0.978 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.425 0.575 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.117 0.883 39 H 0.414 0.586 40 H 0.172 0.828 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 7.476 -17.024 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.366 5.366 14 C 0.392 3.608 15 O -0.493 6.493 16 N -0.324 5.324 17 C 0.078 3.922 18 C -0.146 4.146 19 C -0.092 4.092 20 C -0.003 4.003 21 C 0.004 3.996 22 C -0.169 4.169 23 N -0.307 5.307 24 C 0.275 3.725 25 O -0.432 6.432 26 C -0.023 4.023 27 O -0.216 6.216 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.263 0.737 36 H 0.191 0.809 37 H 0.194 0.806 38 H 0.135 0.865 39 H 0.253 0.747 40 H 0.189 0.811 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.984 7.724 -15.718 21.801 hybrid contribution 1.955 -0.094 1.094 2.243 sum -11.029 7.630 -14.623 19.842 Atomic orbital electron populations 1.21636 0.97043 0.98841 1.00171 1.21805 0.93639 0.99313 1.01310 1.18236 0.93323 0.88793 0.80257 0.98369 1.21547 0.91420 1.38907 1.06696 0.90872 1.25737 1.03116 0.94448 0.95082 1.70044 1.37076 1.38336 1.09833 0.85455 0.79328 0.78372 0.77516 1.19787 1.21463 1.18810 1.45432 1.13854 1.58897 1.18439 1.16209 0.82902 0.78621 0.83081 1.90902 1.52666 1.65667 1.40056 1.42530 1.20617 1.55021 1.14274 1.17435 0.87007 0.93171 0.94615 1.21063 0.94182 1.02017 0.97317 1.20633 0.96001 0.94454 0.98158 1.18748 0.87923 1.00342 0.93247 1.17901 0.95521 0.98856 0.87343 1.20526 0.96766 0.99282 1.00325 1.43885 1.11863 1.55846 1.19065 1.22269 0.82562 0.77750 0.89928 1.90784 1.72942 1.40578 1.38920 1.23392 0.92189 1.07550 0.79138 1.86252 1.29271 1.71088 1.35035 0.95843 0.93703 0.93940 0.93889 0.91129 0.92653 0.76214 0.73651 0.80931 0.80554 0.86510 0.74745 0.81108 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.51 71.98 0.61 -4.65 16 2 C -0.12 -5.78 5.45 30.59 0.17 -5.61 16 3 C 0.30 14.56 2.24 44.24 0.10 14.66 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -27.76 8.73 25.60 0.22 -27.54 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.91 -51.29 11.29 21.45 0.24 -51.05 16 9 Si 0.97 40.97 29.54 68.60 2.03 43.00 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 13 N -0.71 -27.00 5.03 -461.41 -2.32 -29.32 16 14 C 0.69 25.10 6.87 179.05 1.23 26.33 16 15 O -0.61 -27.40 11.16 -3.98 -0.04 -27.44 16 16 N -0.67 -16.87 5.35 -317.05 -1.70 -18.56 16 17 C 0.17 4.22 6.28 38.10 0.24 4.45 16 18 C -0.12 -1.97 9.95 22.42 0.22 -1.75 16 19 C -0.07 -1.10 9.99 22.31 0.22 -0.88 16 20 C 0.04 0.90 6.44 22.59 0.15 1.05 16 21 C 0.10 2.52 6.54 38.13 0.25 2.77 16 22 C -0.15 -4.20 8.55 22.47 0.19 -4.01 16 23 N -0.66 -16.94 5.47 -302.73 -1.66 -18.60 16 24 C 0.49 11.90 7.94 87.63 0.70 12.60 16 25 O -0.55 -17.10 17.95 -3.06 -0.05 -17.16 16 26 C 0.05 0.87 7.17 71.25 0.51 1.38 16 27 O -0.30 -5.48 10.45 -94.58 -0.99 -6.47 16 28 H 0.02 1.11 7.84 -2.39 -0.02 1.10 16 29 H 0.04 1.89 5.65 -2.39 -0.01 1.88 16 30 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.40 12.42 8.56 -92.71 -0.79 11.62 16 35 H 0.42 7.08 8.83 -92.71 -0.82 6.26 16 36 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 38 H 0.12 4.15 6.41 -2.91 -0.02 4.13 16 39 H 0.41 10.63 8.89 -92.71 -0.82 9.81 16 40 H 0.17 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.15 341.97 -0.55 -72.70 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -1.32 Total: 32.80 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 5.26 Total: 20.11 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -5.43 Total: -117.53 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -1.09 Total: -51.07 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -72.15 -0.55 -72.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156982193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.764 kcal (2) G-P(sol) polarization free energy of solvation -72.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds