Wall clock time and date at job start Tue Mar 31 2020 14:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47428 * 2 1 4 4 C 1.50699 * 109.47092 * 239.99985 * 2 1 3 5 5 H 1.08004 * 120.00583 * 240.00114 * 4 2 1 6 6 C 1.37875 * 120.00118 * 60.00437 * 4 2 1 7 7 N 1.31515 * 119.99722 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00444 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46937 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47568 * 119.99873 * 8 6 4 11 11 H 1.48499 * 109.47331 * 239.99772 * 8 6 4 12 12 N 1.46502 * 109.47190 * 120.00484 * 2 1 3 13 13 C 1.34776 * 119.99857 * 274.99849 * 12 2 1 14 14 O 1.21594 * 119.99898 * 0.02562 * 13 12 2 15 15 N 1.34776 * 120.00285 * 179.97438 * 13 12 2 16 16 C 1.39937 * 120.00367 * 184.63244 * 15 13 12 17 17 C 1.38943 * 120.03192 * 324.65504 * 16 15 13 18 18 C 1.38140 * 120.06436 * 179.71797 * 17 16 15 19 19 C 1.38183 * 120.14412 * 0.55514 * 18 17 16 20 20 C 1.38896 * 120.06330 * 359.72352 * 19 18 17 21 21 N 1.39956 * 120.03155 * 180.02562 * 20 19 18 22 22 C 1.47089 * 125.55768 * 359.97438 * 21 20 19 23 23 C 1.54093 * 103.77738 * 179.97438 * 22 21 20 24 24 O 1.45704 * 104.00717 * 359.97438 * 23 22 21 25 25 C 1.33782 * 109.47663 * 359.76667 * 24 23 22 26 26 O 1.21508 * 123.07400 * 180.26200 * 25 24 23 27 27 C 1.38720 * 120.04150 * 144.92624 * 16 15 13 28 28 H 1.09005 * 109.46934 * 59.99739 * 1 2 3 29 29 H 1.09002 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47095 * 300.00098 * 1 2 3 31 31 H 0.97004 * 119.99771 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00437 * 94.99714 * 12 2 1 33 33 H 0.96997 * 119.99750 * 4.90702 * 15 13 12 34 34 H 1.07998 * 119.96602 * 359.97411 * 17 16 15 35 35 H 1.08008 * 119.92877 * 180.25261 * 18 17 16 36 36 H 1.07991 * 119.97220 * 179.74190 * 19 18 17 37 37 H 1.09001 * 110.56244 * 298.53287 * 22 21 20 38 38 H 1.08997 * 110.56650 * 61.24454 * 22 21 20 39 39 H 1.09002 * 110.52013 * 118.62559 * 23 22 21 40 40 H 1.08994 * 110.52363 * 241.36630 * 23 22 21 41 41 H 1.08007 * 120.06203 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1660 -1.5865 -4.8162 11 1 3.1465 -0.1873 -4.8165 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8574 1.1612 2.4119 15 7 2.5958 -0.6539 3.4577 16 6 2.6379 0.0172 4.6849 17 6 2.9455 1.3715 4.7268 18 6 2.9815 2.0359 5.9374 19 6 2.7231 1.3540 7.1111 20 6 2.4207 -0.0012 7.0764 21 7 2.1587 -0.6911 8.2656 22 6 2.1705 -0.1053 9.6147 23 6 1.8197 -1.2918 10.5331 24 8 1.6483 -2.4099 9.6148 25 6 1.8496 -1.9916 8.3601 26 8 1.7636 -2.7246 7.3948 27 6 2.3780 -0.6702 5.8615 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7082 1.1609 -3.4844 32 1 2.2490 -1.6319 1.1526 33 1 2.8934 -1.5752 3.3983 34 1 3.1526 1.9061 3.8116 35 1 3.2168 3.0896 5.9670 36 1 2.7561 1.8752 8.0563 37 1 3.1598 0.2846 9.8542 38 1 1.4200 0.6809 9.6974 39 1 2.6348 -1.4902 11.2292 40 1 0.8936 -1.0961 11.0734 41 1 2.1434 -1.7240 5.8320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170707476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:41 Heat of formation + Delta-G solvation = -54.254335 kcal Electronic energy + Delta-G solvation = -26034.406053 eV Core-core repulsion = 22108.448772 eV Total energy + Delta-G solvation = -3925.957281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.22737 -40.15542 -38.64395 -37.59755 -36.06638 -34.85547 -34.02938 -32.38003 -31.12727 -29.88927 -29.23876 -28.15531 -25.24247 -24.63621 -23.94072 -22.48920 -21.62051 -20.71597 -19.80045 -18.49178 -18.17078 -17.87241 -17.24896 -16.69280 -16.18167 -15.75459 -15.38860 -14.99280 -14.81155 -14.62537 -14.56325 -14.32262 -14.08836 -13.87336 -13.52582 -13.18845 -12.90023 -12.69042 -12.38495 -11.93100 -11.87068 -11.68979 -11.20658 -11.08378 -11.02017 -10.82451 -10.62756 -10.41376 -10.29628 -10.22538 -9.88739 -9.34731 -9.02720 -8.56239 -8.36328 -8.02418 -7.69953 -6.12002 -4.20925 1.28118 1.39690 1.90507 2.43505 2.92027 3.21502 3.24886 3.32938 3.36459 3.56118 3.66291 4.02077 4.14706 4.16324 4.33405 4.66247 4.75279 4.89548 4.90872 5.03269 5.15980 5.20941 5.36528 5.47280 5.57997 5.77683 6.19300 6.23278 6.49176 6.55812 6.71149 6.82697 6.97636 7.00375 7.14089 7.20777 7.28020 7.47215 7.60956 7.63761 7.84615 8.00880 8.16219 8.73894 8.85631 9.24319 9.47455 10.94116 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.002457 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.769476 B =11395.001069 C =11961.812583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.718 5.718 13 C 0.694 3.306 14 O -0.581 6.581 15 N -0.695 5.695 16 C 0.211 3.789 17 C -0.139 4.139 18 C -0.074 4.074 19 C -0.179 4.179 20 C 0.190 3.810 21 N -0.567 5.567 22 C 0.060 3.940 23 C 0.042 3.958 24 O -0.323 6.323 25 C 0.642 3.358 26 O -0.499 6.499 27 C -0.189 4.189 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.404 0.596 34 H 0.147 0.853 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -0.766 27.122 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.369 5.369 13 C 0.394 3.606 14 O -0.459 6.459 15 N -0.342 5.342 16 C 0.113 3.887 17 C -0.160 4.160 18 C -0.093 4.093 19 C -0.201 4.201 20 C 0.098 3.902 21 N -0.304 5.304 22 C -0.063 4.063 23 C -0.033 4.033 24 O -0.233 6.233 25 C 0.397 3.603 26 O -0.382 6.382 27 C -0.212 4.212 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.240 0.760 34 H 0.165 0.835 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.690 -0.254 26.502 26.759 hybrid contribution 0.465 -1.180 -0.703 1.450 sum 4.155 -1.434 25.799 26.171 Atomic orbital electron populations 1.22107 0.98514 0.99162 1.00946 1.18694 0.90887 0.93744 0.78828 0.93217 1.21249 1.32405 1.13240 0.90224 0.91995 1.24885 0.94833 0.94983 0.99054 1.69919 1.35861 1.22479 1.23793 0.86372 0.78582 0.79498 0.82505 1.19752 1.20872 1.20882 1.45880 1.68428 1.13380 1.09198 1.16136 0.78598 0.85483 0.80350 1.90866 1.57034 1.14041 1.83958 1.42849 1.68227 1.16617 1.06531 1.17291 0.95302 0.91988 0.84080 1.21486 1.01267 0.93880 0.99377 1.20803 0.97828 0.99601 0.91092 1.20541 1.08671 0.91714 0.99181 1.16949 0.99964 0.90853 0.82453 1.45310 1.69158 1.09214 1.06724 1.22961 1.05167 0.97570 0.80563 1.24356 1.04919 0.82250 0.91794 1.87335 1.84161 1.35333 1.16449 1.18469 0.76801 0.81744 0.83286 1.90973 1.55093 1.58129 1.34030 1.21164 1.07344 1.03060 0.89639 0.89079 0.95484 0.96555 0.92611 0.78065 0.76045 0.83534 0.85230 0.86039 0.88075 0.88068 0.87122 0.87150 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.15 0.34 -3.43 16 2 C 0.28 7.21 2.56 -69.09 -0.18 7.03 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.95 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.72 -15.28 5.07 -59.82 -0.30 -15.58 16 13 C 0.69 14.44 8.37 -86.92 -0.73 13.72 16 14 O -0.58 -14.04 13.45 5.28 0.07 -13.97 16 15 N -0.69 -11.50 5.34 -14.24 -0.08 -11.58 16 16 C 0.21 3.39 6.29 -83.72 -0.53 2.86 16 17 C -0.14 -2.18 8.69 -39.36 -0.34 -2.52 16 18 C -0.07 -0.90 10.03 -39.64 -0.40 -1.30 16 19 C -0.18 -1.90 9.49 -39.36 -0.37 -2.27 16 20 C 0.19 2.35 6.63 -83.71 -0.56 1.80 16 21 N -0.57 -5.76 3.16 -118.29 -0.37 -6.14 16 22 C 0.06 0.27 6.48 -3.15 -0.02 0.25 16 23 C 0.04 0.15 8.23 37.73 0.31 0.46 16 24 O -0.32 -3.12 11.09 -37.86 -0.42 -3.54 16 25 C 0.64 8.02 8.77 53.71 0.47 8.49 16 26 O -0.50 -8.14 14.74 -19.11 -0.28 -8.42 16 27 C -0.19 -2.80 9.23 -39.21 -0.36 -3.16 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.39 7.11 8.56 -40.82 -0.35 6.76 16 33 H 0.40 5.48 8.84 -40.82 -0.36 5.12 16 34 H 0.15 2.64 6.24 -52.49 -0.33 2.31 16 35 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 36 H 0.12 0.86 7.30 -52.49 -0.38 0.48 16 37 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.16 2.48 5.24 -52.48 -0.27 2.20 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -35.10 345.88 -8.22 -43.32 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.90 Total: 10.17 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -2.75 Total: 9.11 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.13 Total: -57.62 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.63 Total: -25.93 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.10 -8.22 -43.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170707476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.936 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds