Wall clock time and date at job start Tue Mar 31 2020 14:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47428 * 2 1 4 4 C 1.50699 * 109.47092 * 239.99985 * 2 1 3 5 5 H 1.08004 * 120.00583 * 240.00114 * 4 2 1 6 6 C 1.37875 * 120.00118 * 60.00437 * 4 2 1 7 7 N 1.31515 * 119.99722 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00444 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46937 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47568 * 119.99873 * 8 6 4 11 11 H 1.48499 * 109.47331 * 239.99772 * 8 6 4 12 12 N 1.46502 * 109.47190 * 120.00484 * 2 1 3 13 13 C 1.34776 * 119.99857 * 274.99849 * 12 2 1 14 14 O 1.21594 * 119.99898 * 0.02562 * 13 12 2 15 15 N 1.34776 * 120.00285 * 179.97438 * 13 12 2 16 16 C 1.39937 * 120.00367 * 184.63244 * 15 13 12 17 17 C 1.38943 * 120.03192 * 324.65504 * 16 15 13 18 18 C 1.38140 * 120.06436 * 179.71797 * 17 16 15 19 19 C 1.38183 * 120.14412 * 0.55514 * 18 17 16 20 20 C 1.38896 * 120.06330 * 359.72352 * 19 18 17 21 21 N 1.39956 * 120.03155 * 180.02562 * 20 19 18 22 22 C 1.47089 * 125.55768 * 359.97438 * 21 20 19 23 23 C 1.54093 * 103.77738 * 179.97438 * 22 21 20 24 24 O 1.45704 * 104.00717 * 359.97438 * 23 22 21 25 25 C 1.33782 * 109.47663 * 359.76667 * 24 23 22 26 26 O 1.21508 * 123.07400 * 180.26200 * 25 24 23 27 27 C 1.38720 * 120.04150 * 144.92624 * 16 15 13 28 28 H 1.09005 * 109.46934 * 59.99739 * 1 2 3 29 29 H 1.09002 * 109.47369 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47095 * 300.00098 * 1 2 3 31 31 H 0.97004 * 119.99771 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00437 * 94.99714 * 12 2 1 33 33 H 0.96997 * 119.99750 * 4.90702 * 15 13 12 34 34 H 1.07998 * 119.96602 * 359.97411 * 17 16 15 35 35 H 1.08008 * 119.92877 * 180.25261 * 18 17 16 36 36 H 1.07991 * 119.97220 * 179.74190 * 19 18 17 37 37 H 1.09001 * 110.56244 * 298.53287 * 22 21 20 38 38 H 1.08997 * 110.56650 * 61.24454 * 22 21 20 39 39 H 1.09002 * 110.52013 * 118.62559 * 23 22 21 40 40 H 1.08994 * 110.52363 * 241.36630 * 23 22 21 41 41 H 1.08007 * 120.06203 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3213 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1660 -1.5865 -4.8162 11 1 3.1465 -0.1873 -4.8165 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8574 1.1612 2.4119 15 7 2.5958 -0.6539 3.4577 16 6 2.6379 0.0172 4.6849 17 6 2.9455 1.3715 4.7268 18 6 2.9815 2.0359 5.9374 19 6 2.7231 1.3540 7.1111 20 6 2.4207 -0.0012 7.0764 21 7 2.1587 -0.6911 8.2656 22 6 2.1705 -0.1053 9.6147 23 6 1.8197 -1.2918 10.5331 24 8 1.6483 -2.4099 9.6148 25 6 1.8496 -1.9916 8.3601 26 8 1.7636 -2.7246 7.3948 27 6 2.3780 -0.6702 5.8615 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7082 1.1609 -3.4844 32 1 2.2490 -1.6319 1.1526 33 1 2.8934 -1.5752 3.3983 34 1 3.1526 1.9061 3.8116 35 1 3.2168 3.0896 5.9670 36 1 2.7561 1.8752 8.0563 37 1 3.1598 0.2846 9.8542 38 1 1.4200 0.6809 9.6974 39 1 2.6348 -1.4902 11.2292 40 1 0.8936 -1.0961 11.0734 41 1 2.1434 -1.7240 5.8320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170707476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:40 Heat of formation + Delta-G solvation = -79.838082 kcal Electronic energy + Delta-G solvation = -26035.515448 eV Core-core repulsion = 22108.448772 eV Total energy + Delta-G solvation = -3927.066676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.96433 -41.57177 -39.85706 -38.53594 -37.27835 -36.45657 -35.40173 -34.30312 -31.89411 -31.35707 -30.08898 -29.66205 -27.34976 -25.28856 -24.88842 -23.90537 -22.60567 -22.15604 -21.40380 -19.90430 -19.35488 -18.48110 -18.22321 -18.03139 -17.47313 -17.25894 -16.67025 -16.44465 -16.15180 -15.85368 -15.30224 -15.28223 -15.16779 -14.96159 -14.75448 -14.51529 -14.37943 -13.87833 -13.57078 -13.29936 -13.04235 -12.96740 -12.92448 -12.74316 -12.73429 -12.29512 -12.12469 -11.99145 -11.59153 -11.37941 -11.18640 -11.10474 -10.84471 -10.62087 -9.88653 -9.36758 -8.87797 -8.18518 -6.35635 0.23073 0.33200 1.14751 1.44539 1.44996 1.52612 1.57336 1.75520 2.15549 2.41263 2.45650 2.86278 3.11989 3.25083 3.36998 3.55381 3.96957 4.07172 4.20954 4.28102 4.34354 4.50088 4.53647 4.67168 4.72462 4.72539 4.75279 4.91586 5.07408 5.20718 5.30088 5.34940 5.41226 5.46623 5.56761 5.62459 5.65294 5.83325 6.05898 6.07701 6.20403 6.23600 6.71631 6.73736 7.17197 7.32646 7.62868 8.88355 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.028283 B = 0.002457 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.769476 B =11395.001069 C =11961.812583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.975 3.025 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.282 1.282 12 N -0.715 5.715 13 C 0.695 3.305 14 O -0.618 6.618 15 N -0.681 5.681 16 C 0.182 3.818 17 C -0.165 4.165 18 C -0.067 4.067 19 C -0.153 4.153 20 C 0.190 3.810 21 N -0.565 5.565 22 C 0.053 3.947 23 C 0.036 3.964 24 O -0.338 6.338 25 C 0.636 3.364 26 O -0.553 6.553 27 C -0.201 4.201 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.417 0.583 34 H 0.115 0.885 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -0.662 30.188 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.186 3.814 3 H 0.021 0.979 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.208 1.208 12 N -0.368 5.368 13 C 0.395 3.605 14 O -0.499 6.499 15 N -0.329 5.329 16 C 0.086 3.914 17 C -0.186 4.186 18 C -0.086 4.086 19 C -0.174 4.174 20 C 0.096 3.904 21 N -0.302 5.302 22 C -0.068 4.068 23 C -0.037 4.037 24 O -0.248 6.248 25 C 0.392 3.608 26 O -0.440 6.440 27 C -0.224 4.224 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.237 0.763 33 H 0.255 0.745 34 H 0.133 0.867 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.514 -0.175 29.685 30.026 hybrid contribution 0.224 -1.140 -1.385 1.808 sum 4.737 -1.315 28.299 28.723 Atomic orbital electron populations 1.21933 0.98475 0.99364 0.99594 1.18281 0.90843 0.91813 0.80504 0.97860 1.21544 1.32643 1.13590 0.90658 0.90922 1.25800 0.94873 0.95619 1.02279 1.70058 1.36878 1.23886 1.24635 0.85254 0.78068 0.78453 0.78276 1.18548 1.20390 1.20801 1.45505 1.68800 1.13954 1.08493 1.16195 0.78338 0.85032 0.80927 1.90837 1.58571 1.15772 1.84709 1.42540 1.67458 1.17037 1.05863 1.17471 0.97544 0.92502 0.83871 1.21403 1.03415 0.93858 0.99931 1.21145 0.96410 1.00938 0.90137 1.20966 1.05333 0.90594 1.00517 1.17111 0.99027 0.91686 0.82539 1.45416 1.67940 1.08716 1.08108 1.23498 1.07893 0.98192 0.77173 1.24918 1.07701 0.80073 0.90964 1.87309 1.83692 1.37827 1.15954 1.18718 0.76341 0.82136 0.83609 1.90925 1.57305 1.59644 1.36164 1.21105 1.08235 1.02548 0.90519 0.91138 0.94316 0.97083 0.92452 0.76281 0.74546 0.86687 0.82276 0.81029 0.85085 0.85539 0.84123 0.84485 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.11 9.26 71.98 0.67 -6.44 16 2 C 0.29 15.48 2.56 44.24 0.11 15.59 16 3 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 4 C -0.55 -29.50 8.73 25.60 0.22 -29.27 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.72 -31.60 5.07 -461.42 -2.34 -33.94 16 13 C 0.69 30.41 8.37 179.05 1.50 31.91 16 14 O -0.62 -31.72 13.45 -4.01 -0.05 -31.78 16 15 N -0.68 -23.72 5.34 -317.23 -1.69 -25.41 16 16 C 0.18 6.08 6.29 38.13 0.24 6.31 16 17 C -0.16 -5.30 8.69 22.42 0.19 -5.11 16 18 C -0.07 -1.49 10.03 22.23 0.22 -1.27 16 19 C -0.15 -2.64 9.49 22.41 0.21 -2.43 16 20 C 0.19 4.32 6.63 38.12 0.25 4.58 16 21 N -0.57 -10.01 3.16 -759.88 -2.40 -12.42 16 22 C 0.05 0.20 6.48 86.64 0.56 0.76 16 23 C 0.04 0.10 8.23 72.35 0.60 0.70 16 24 O -0.34 -5.92 11.09 -47.42 -0.53 -6.44 16 25 C 0.64 15.39 8.77 129.91 1.14 16.53 16 26 O -0.55 -18.71 14.74 19.66 0.29 -18.42 16 27 C -0.20 -6.04 9.23 22.51 0.21 -5.84 16 28 H 0.07 4.01 6.07 -2.38 -0.01 4.00 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 32 H 0.40 15.08 8.56 -92.71 -0.79 14.29 16 33 H 0.42 11.90 8.84 -92.71 -0.82 11.08 16 34 H 0.12 4.44 6.24 -2.91 -0.02 4.42 16 35 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 36 H 0.17 1.26 7.30 -2.92 -0.02 1.24 16 37 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.14 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.14 4.73 5.24 -2.91 -0.02 4.72 16 Total: -1.00 -82.69 345.88 1.61 -81.08 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.51 Total: 28.22 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 6.58 Total: 27.27 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -6.20 Total: -124.60 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: -0.29 Total: -56.64 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -82.69 1.61 -81.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170707476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.244 kcal (2) G-P(sol) polarization free energy of solvation -82.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds