Wall clock time and date at job start Tue Mar 31 2020 12:15:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53001 * 109.47103 * 2 1
4 4 H 1.09000 * 109.47380 * 55.00576 * 3 2 1
5 5 C 1.50710 * 109.47267 * 175.00116 * 3 2 1
6 6 H 1.07998 * 119.99789 * 120.00227 * 5 3 2
7 7 C 1.37880 * 119.99848 * 300.00436 * 5 3 2
8 8 N 1.31521 * 119.99878 * 359.97438 * 7 5 3
9 9 Si 1.86794 * 120.00061 * 179.97438 * 7 5 3
10 10 H 1.48499 * 109.46929 * 59.99664 * 9 7 5
11 11 H 1.48498 * 109.47202 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.46983 * 299.99981 * 9 7 5
13 13 N 1.46494 * 109.47305 * 294.99928 * 3 2 1
14 14 C 1.34784 * 119.99635 * 85.00093 * 13 3 2
15 15 O 1.21623 * 120.00016 * 0.02562 * 14 13 3
16 16 C 1.47229 * 119.99797 * 180.02562 * 14 13 3
17 17 C 1.36136 * 127.21753 * 89.68371 * 16 14 13
18 18 C 1.50696 * 125.20829 * 359.96494 * 17 16 14
19 19 O 1.33956 * 109.58924 * 179.83021 * 17 16 14
20 20 C 1.34333 * 111.41166 * 0.45657 * 19 17 16
21 21 N 1.34204 * 133.43383 * 179.72659 * 20 19 17
22 22 C 1.30346 * 121.37784 * 179.97438 * 21 20 19
23 23 N 1.35605 * 122.39180 * 359.97438 * 22 21 20
24 24 C 1.46500 * 119.96004 * 180.02562 * 23 22 21
25 25 C 1.35305 * 120.07368 * 0.02562 * 23 22 21
26 26 O 1.21906 * 120.98025 * 179.97438 * 25 23 22
27 27 C 1.39512 * 107.66994 * 359.72651 * 20 19 17
28 28 H 1.09000 * 109.47153 * 59.99728 * 1 2 3
29 29 H 1.08998 * 109.47000 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.46445 * 299.99766 * 1 2 3
31 31 H 1.09001 * 109.47180 * 240.00326 * 2 1 3
32 32 H 1.09000 * 109.47366 * 119.99762 * 2 1 3
33 33 H 0.97001 * 119.99446 * 179.97438 * 8 7 5
34 34 H 0.96995 * 120.00292 * 265.27526 * 13 3 2
35 35 H 1.08994 * 109.47289 * 89.99503 * 18 17 16
36 36 H 1.09001 * 109.47068 * 210.00154 * 18 17 16
37 37 H 1.09003 * 109.46789 * 329.99409 * 18 17 16
38 38 H 1.07990 * 118.80560 * 179.97438 * 22 21 20
39 39 H 1.09003 * 109.47448 * 359.97438 * 24 23 22
40 40 H 1.09001 * 109.47521 * 120.00196 * 24 23 22
41 41 H 1.09004 * 109.46955 * 240.00224 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6055 1.9816 0.8419
5 6 3.5420 1.4444 0.1238
6 1 4.1472 1.8890 -0.6523
7 6 4.1434 0.8784 1.2279
8 7 3.4062 0.3373 2.1733
9 14 6.0050 0.8800 1.3811
10 1 6.5005 2.2799 1.3808
11 1 6.3979 0.2166 2.6503
12 1 6.5967 0.1453 0.2342
13 7 1.6525 2.0975 -1.2517
14 6 0.4351 2.6644 -1.3668
15 8 -0.3414 2.6326 -0.4313
16 6 0.0454 3.3222 -2.6250
17 6 -0.5695 2.7508 -3.6968
18 6 -0.9743 1.3027 -3.7961
19 8 -0.7622 3.6735 -4.6486
20 6 -0.2884 4.8728 -4.2722
21 7 -0.2442 6.0754 -4.8663
22 6 0.2835 7.1077 -4.2706
23 7 0.8158 7.0344 -3.0256
24 6 1.3950 8.2290 -2.4060
25 6 0.8125 5.8593 -2.3549
26 8 1.2869 5.7746 -1.2351
27 6 0.2446 4.7342 -2.9903
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3632 0.5138 0.8901
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 3.8294 -0.0612 2.9498
34 1 2.2704 2.1197 -1.9991
35 1 -1.9886 1.1821 -3.4159
36 1 -0.9367 0.9855 -4.8383
37 1 -0.2902 0.6929 -3.2059
38 1 0.2974 8.0558 -4.7874
39 1 1.3076 9.0723 -3.0911
40 1 0.8618 8.4541 -1.4823
41 1 2.4469 8.0493 -2.1838
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183803874.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:55
Heat of formation + Delta-G solvation = -17.672666 kcal
Electronic energy + Delta-G solvation = -27440.583724 eV
Core-core repulsion = 23516.212743 eV
Total energy + Delta-G solvation = -3924.370981 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.03769 -40.98038 -38.81510 -37.59256 -35.04219 -34.95713 -33.27627 -32.19900
-31.41742 -30.79839 -28.23173 -27.56327 -26.86908 -24.08125 -23.87028 -23.21124
-22.27577 -20.20501 -19.48076 -18.92795 -17.90956 -17.40726 -17.14926 -16.57568
-15.95776 -15.56159 -15.33036 -15.27443 -14.75497 -14.42560 -14.23983 -14.15043
-13.42010 -13.34648 -13.18566 -13.03517 -12.97568 -12.65195 -12.62452 -12.38261
-11.75899 -11.42019 -11.22057 -10.97011 -10.78265 -10.40986 -10.32214 -10.28021
-10.25080 -10.17945 -9.76552 -9.58869 -9.13341 -8.99806 -8.44679 -8.05932
-7.78262 -6.06847 -4.15299 0.38903 1.40587 1.85414 2.03797 2.15919
3.25238 3.29554 3.34146 3.36264 3.39438 3.85439 3.98541 4.20215
4.37317 4.40213 4.59226 4.67720 4.97817 5.14109 5.16733 5.24998
5.31315 5.35420 5.41516 5.53772 5.75722 5.95575 6.08828 6.27265
6.40220 6.46802 6.66892 6.72558 7.04317 7.23080 7.37221 7.39146
7.48417 7.66134 7.71526 7.77540 7.96397 8.22072 8.69921 8.82403
9.14812 9.51008 10.98730
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.013646 B = 0.004463 C = 0.003677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2051.338152 B = 6272.343591 C = 7613.149867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.128 4.128
3 C 0.271 3.729
4 H 0.051 0.949
5 C -0.531 4.531
6 H 0.060 0.940
7 C 0.067 3.933
8 N -0.883 5.883
9 Si 0.901 3.099
10 H -0.277 1.277
11 H -0.286 1.286
12 H -0.276 1.276
13 N -0.693 5.693
14 C 0.579 3.421
15 O -0.533 6.533
16 C -0.140 4.140
17 C 0.041 3.959
18 C -0.076 4.076
19 O -0.152 6.152
20 C 0.270 3.730
21 N -0.510 5.510
22 C 0.394 3.606
23 N -0.540 5.540
24 C 0.067 3.933
25 C 0.553 3.447
26 O -0.491 6.491
27 C -0.258 4.258
28 H 0.037 0.963
29 H 0.024 0.976
30 H 0.050 0.950
31 H 0.032 0.968
32 H 0.101 0.899
33 H 0.264 0.736
34 H 0.388 0.612
35 H 0.092 0.908
36 H 0.086 0.914
37 H 0.101 0.899
38 H 0.219 0.781
39 H 0.095 0.905
40 H 0.084 0.916
41 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.229 12.062 -15.978 20.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.166 4.166
3 C 0.170 3.830
4 H 0.068 0.932
5 C -0.569 4.569
6 H 0.078 0.922
7 C -0.136 4.136
8 N -0.521 5.521
9 Si 0.728 3.272
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.202 1.202
13 N -0.339 5.339
14 C 0.362 3.638
15 O -0.411 6.411
16 C -0.146 4.146
17 C -0.009 4.009
18 C -0.132 4.132
19 O -0.046 6.046
20 C 0.107 3.893
21 N -0.238 5.238
22 C 0.109 3.891
23 N -0.263 5.263
24 C -0.075 4.075
25 C 0.349 3.651
26 O -0.364 6.364
27 C -0.266 4.266
28 H 0.056 0.944
29 H 0.043 0.957
30 H 0.069 0.931
31 H 0.051 0.949
32 H 0.119 0.881
33 H 0.074 0.926
34 H 0.220 0.780
35 H 0.111 0.889
36 H 0.105 0.895
37 H 0.119 0.881
38 H 0.235 0.765
39 H 0.113 0.887
40 H 0.103 0.897
41 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -6.925 11.612 -15.310 20.425
hybrid contribution 1.615 0.173 0.447 1.684
sum -5.310 11.785 -14.863 19.698
Atomic orbital electron populations
1.21874 0.98395 0.98069 1.01298 1.21948 0.92570 0.99698 1.02422
1.18835 0.94333 0.89060 0.80804 0.93161 1.21174 0.90629 1.38788
1.06332 0.92231 1.24861 0.98537 0.94864 0.95325 1.69886 1.35132
1.37709 1.09327 0.86518 0.84976 0.78285 0.77382 1.20242 1.21113
1.20190 1.46432 1.13840 1.55148 1.18503 1.16946 0.83233 0.78566
0.85066 1.90787 1.51916 1.59593 1.38805 1.20822 1.05171 0.91604
0.96992 1.22616 1.01410 0.91361 0.85482 1.20548 1.03782 0.84250
1.04633 1.83526 1.64444 1.15008 1.41618 1.19343 0.94969 0.85839
0.89162 1.67090 1.25653 0.95912 1.35133 1.24878 0.85446 0.97288
0.81531 1.46841 1.50742 1.12635 1.16102 1.22156 1.00790 0.84578
0.99981 1.16200 0.81025 0.81637 0.86255 1.91056 1.44847 1.83192
1.17321 1.21001 1.12778 0.95540 0.97312 0.94401 0.95669 0.93055
0.94928 0.88118 0.92555 0.77983 0.88935 0.89540 0.88067 0.76451
0.88684 0.89700 0.89608
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16
2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16
3 C 0.27 7.14 2.24 -69.08 -0.15 6.98 16
4 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16
5 C -0.53 -14.60 8.73 -34.43 -0.30 -14.90 16
6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16
7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16
8 N -0.88 -25.26 11.29 55.43 0.63 -24.63 16
9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16
10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
13 N -0.69 -15.73 5.02 -56.07 -0.28 -16.01 16
14 C 0.58 12.98 5.80 -12.60 -0.07 12.91 16
15 O -0.53 -13.76 14.24 5.26 0.07 -13.69 16
16 C -0.14 -2.63 6.06 -103.36 -0.63 -3.26 16
17 C 0.04 0.63 7.31 -35.07 -0.26 0.37 16
18 C -0.08 -0.88 10.21 36.00 0.37 -0.51 16
19 O -0.15 -2.25 10.51 6.55 0.07 -2.18 16
20 C 0.27 4.07 8.60 -16.04 -0.14 3.93 16
21 N -0.51 -6.03 10.42 -14.00 -0.15 -6.18 16
22 C 0.39 3.13 11.48 -89.99 -1.03 2.10 16
23 N -0.54 -5.78 3.00 -128.27 -0.38 -6.17 16
24 C 0.07 0.44 10.16 59.85 0.61 1.05 16
25 C 0.55 9.46 7.47 -14.92 -0.11 9.35 16
26 O -0.49 -10.60 17.21 5.00 0.09 -10.52 16
27 C -0.26 -4.56 6.39 -104.68 -0.67 -5.23 16
28 H 0.04 0.80 5.36 -51.93 -0.28 0.52 16
29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16
31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
32 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16
33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
34 H 0.39 7.98 8.53 -40.82 -0.35 7.63 16
35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16
37 H 0.10 1.26 7.59 -51.93 -0.39 0.86 16
38 H 0.22 0.31 7.80 -52.49 -0.41 -0.10 16
39 H 0.09 0.14 7.72 -51.93 -0.40 -0.26 16
40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16
41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
LS Contribution 349.53 15.07 5.27 5.27
Total: -1.00 -37.96 349.53 -7.04 -44.99
By element:
Atomic # 1 Polarization: 9.44 SS G_CDS: -5.02 Total: 4.42 kcal
Atomic # 6 Polarization: 10.81 SS G_CDS: -2.31 Total: 8.50 kcal
Atomic # 7 Polarization: -52.81 SS G_CDS: -0.19 Total: -52.99 kcal
Atomic # 8 Polarization: -26.62 SS G_CDS: 0.23 Total: -26.39 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -37.96 -7.04 -44.99 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183803874.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.322 kcal
(2) G-P(sol) polarization free energy of solvation -37.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.634 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds