Wall clock time and date at job start Tue Mar 31 2020 12:15:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53001 * 109.47103 * 2 1
4 4 H 1.09000 * 109.47380 * 55.00576 * 3 2 1
5 5 C 1.50710 * 109.47267 * 175.00116 * 3 2 1
6 6 H 1.07998 * 119.99789 * 120.00227 * 5 3 2
7 7 C 1.37880 * 119.99848 * 300.00436 * 5 3 2
8 8 N 1.31521 * 119.99878 * 359.97438 * 7 5 3
9 9 Si 1.86794 * 120.00061 * 179.97438 * 7 5 3
10 10 H 1.48499 * 109.46929 * 59.99664 * 9 7 5
11 11 H 1.48498 * 109.47202 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.46983 * 299.99981 * 9 7 5
13 13 N 1.46494 * 109.47305 * 294.99928 * 3 2 1
14 14 C 1.34784 * 119.99635 * 85.00093 * 13 3 2
15 15 O 1.21623 * 120.00016 * 0.02562 * 14 13 3
16 16 C 1.47229 * 119.99797 * 180.02562 * 14 13 3
17 17 C 1.36136 * 127.21753 * 89.68371 * 16 14 13
18 18 C 1.50696 * 125.20829 * 359.96494 * 17 16 14
19 19 O 1.33956 * 109.58924 * 179.83021 * 17 16 14
20 20 C 1.34333 * 111.41166 * 0.45657 * 19 17 16
21 21 N 1.34204 * 133.43383 * 179.72659 * 20 19 17
22 22 C 1.30346 * 121.37784 * 179.97438 * 21 20 19
23 23 N 1.35605 * 122.39180 * 359.97438 * 22 21 20
24 24 C 1.46500 * 119.96004 * 180.02562 * 23 22 21
25 25 C 1.35305 * 120.07368 * 0.02562 * 23 22 21
26 26 O 1.21906 * 120.98025 * 179.97438 * 25 23 22
27 27 C 1.39512 * 107.66994 * 359.72651 * 20 19 17
28 28 H 1.09000 * 109.47153 * 59.99728 * 1 2 3
29 29 H 1.08998 * 109.47000 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.46445 * 299.99766 * 1 2 3
31 31 H 1.09001 * 109.47180 * 240.00326 * 2 1 3
32 32 H 1.09000 * 109.47366 * 119.99762 * 2 1 3
33 33 H 0.97001 * 119.99446 * 179.97438 * 8 7 5
34 34 H 0.96995 * 120.00292 * 265.27526 * 13 3 2
35 35 H 1.08994 * 109.47289 * 89.99503 * 18 17 16
36 36 H 1.09001 * 109.47068 * 210.00154 * 18 17 16
37 37 H 1.09003 * 109.46789 * 329.99409 * 18 17 16
38 38 H 1.07990 * 118.80560 * 179.97438 * 22 21 20
39 39 H 1.09003 * 109.47448 * 359.97438 * 24 23 22
40 40 H 1.09001 * 109.47521 * 120.00196 * 24 23 22
41 41 H 1.09004 * 109.46955 * 240.00224 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6055 1.9816 0.8419
5 6 3.5420 1.4444 0.1238
6 1 4.1472 1.8890 -0.6523
7 6 4.1434 0.8784 1.2279
8 7 3.4062 0.3373 2.1733
9 14 6.0050 0.8800 1.3811
10 1 6.5005 2.2799 1.3808
11 1 6.3979 0.2166 2.6503
12 1 6.5967 0.1453 0.2342
13 7 1.6525 2.0975 -1.2517
14 6 0.4351 2.6644 -1.3668
15 8 -0.3414 2.6326 -0.4313
16 6 0.0454 3.3222 -2.6250
17 6 -0.5695 2.7508 -3.6968
18 6 -0.9743 1.3027 -3.7961
19 8 -0.7622 3.6735 -4.6486
20 6 -0.2884 4.8728 -4.2722
21 7 -0.2442 6.0754 -4.8663
22 6 0.2835 7.1077 -4.2706
23 7 0.8158 7.0344 -3.0256
24 6 1.3950 8.2290 -2.4060
25 6 0.8125 5.8593 -2.3549
26 8 1.2869 5.7746 -1.2351
27 6 0.2446 4.7342 -2.9903
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3632 0.5138 0.8901
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 3.8294 -0.0612 2.9498
34 1 2.2704 2.1197 -1.9991
35 1 -1.9886 1.1821 -3.4159
36 1 -0.9367 0.9855 -4.8383
37 1 -0.2902 0.6929 -3.2059
38 1 0.2974 8.0558 -4.7874
39 1 1.3076 9.0723 -3.0911
40 1 0.8618 8.4541 -1.4823
41 1 2.4469 8.0493 -2.1838
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183803874.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:54
Heat of formation + Delta-G solvation = -47.533141 kcal
Electronic energy + Delta-G solvation = -27441.878571 eV
Core-core repulsion = 23516.212743 eV
Total energy + Delta-G solvation = -3925.665828 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 319.136 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-44.19327 -42.04966 -40.63346 -38.80893 -36.99851 -35.94491 -34.69259 -34.15679
-32.72904 -32.44368 -29.36077 -28.83632 -28.36024 -25.57936 -24.93705 -24.70466
-23.82301 -21.78188 -21.20294 -20.42691 -19.06127 -18.70263 -18.29825 -18.10294
-17.34887 -17.12350 -16.93714 -16.47863 -16.24193 -16.06957 -15.73489 -15.28767
-14.82814 -14.65676 -14.49544 -14.35634 -14.22595 -13.87831 -13.47594 -13.45676
-13.45238 -13.20040 -13.10734 -12.97095 -12.69240 -12.21910 -12.11364 -11.67993
-11.61401 -11.38272 -11.28718 -11.13234 -11.06922 -10.87520 -10.56434 -9.74707
-9.22871 -8.19373 -6.37184 -0.56828 0.14875 0.77730 0.90746 1.26045
1.39855 1.43184 1.50639 1.55889 2.26676 2.32161 2.48895 3.06354
3.09509 3.16785 3.25942 3.74029 3.90237 3.94879 4.06231 4.34668
4.41119 4.44012 4.46571 4.53139 4.57419 4.64452 4.73637 4.80702
4.99122 5.04740 5.11222 5.23542 5.31052 5.42007 5.50164 5.54324
5.57437 5.75681 5.87124 6.12957 6.43537 6.54554 6.67351 6.82938
7.25520 7.42178 8.86111
Molecular weight = 319.14amu
Principal moments of inertia in cm(-1)
A = 0.013646 B = 0.004463 C = 0.003677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2051.338152 B = 6272.343591 C = 7613.149867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.118 4.118
3 C 0.279 3.721
4 H -0.010 1.010
5 C -0.552 4.552
6 H 0.063 0.937
7 C 0.018 3.982
8 N -0.912 5.912
9 Si 0.972 3.028
10 H -0.277 1.277
11 H -0.280 1.280
12 H -0.261 1.261
13 N -0.690 5.690
14 C 0.586 3.414
15 O -0.578 6.578
16 C -0.190 4.190
17 C 0.069 3.931
18 C -0.078 4.078
19 O -0.147 6.147
20 C 0.293 3.707
21 N -0.525 5.525
22 C 0.425 3.575
23 N -0.530 5.530
24 C 0.059 3.941
25 C 0.541 3.459
26 O -0.560 6.560
27 C -0.308 4.308
28 H 0.046 0.954
29 H 0.056 0.944
30 H 0.020 0.980
31 H 0.048 0.952
32 H 0.075 0.925
33 H 0.267 0.733
34 H 0.398 0.602
35 H 0.106 0.894
36 H 0.123 0.877
37 H 0.090 0.910
38 H 0.298 0.702
39 H 0.164 0.836
40 H 0.072 0.928
41 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.973 13.731 -19.734 24.771
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.157 4.157
3 C 0.177 3.823
4 H 0.008 0.992
5 C -0.590 4.590
6 H 0.081 0.919
7 C -0.182 4.182
8 N -0.550 5.550
9 Si 0.796 3.204
10 H -0.203 1.203
11 H -0.205 1.205
12 H -0.185 1.185
13 N -0.337 5.337
14 C 0.371 3.629
15 O -0.459 6.459
16 C -0.196 4.196
17 C 0.019 3.981
18 C -0.134 4.134
19 O -0.041 6.041
20 C 0.129 3.871
21 N -0.254 5.254
22 C 0.143 3.857
23 N -0.250 5.250
24 C -0.081 4.081
25 C 0.339 3.661
26 O -0.439 6.439
27 C -0.317 4.317
28 H 0.065 0.935
29 H 0.074 0.926
30 H 0.039 0.961
31 H 0.067 0.933
32 H 0.093 0.907
33 H 0.076 0.924
34 H 0.232 0.768
35 H 0.125 0.875
36 H 0.142 0.858
37 H 0.109 0.891
38 H 0.313 0.687
39 H 0.182 0.818
40 H 0.091 0.909
41 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -6.664 13.337 -19.132 24.255
hybrid contribution 1.484 -0.145 1.527 2.134
sum -5.180 13.192 -17.605 22.601
Atomic orbital electron populations
1.21721 0.96727 0.99637 1.00274 1.21759 0.93999 0.98127 1.01793
1.18463 0.93819 0.89569 0.80481 0.99211 1.21473 0.91261 1.39294
1.06995 0.91871 1.25759 1.03546 0.94178 0.94728 1.70041 1.37169
1.38065 1.09746 0.85413 0.78822 0.78237 0.77951 1.20297 1.20501
1.18509 1.46226 1.14551 1.55259 1.17619 1.17350 0.82206 0.77354
0.85952 1.90741 1.53083 1.61088 1.41009 1.20500 1.09219 0.93079
0.96769 1.23076 0.98584 0.92408 0.84054 1.20774 1.04018 0.81596
1.07001 1.83571 1.64374 1.15060 1.41093 1.19719 0.92729 0.86711
0.87954 1.67342 1.27621 0.95073 1.35371 1.26577 0.80901 0.98527
0.79702 1.46937 1.49593 1.11802 1.16663 1.22571 0.99523 0.84548
1.01448 1.16480 0.80432 0.83477 0.85756 1.91005 1.48068 1.84664
1.20134 1.21176 1.15839 0.95464 0.99208 0.93481 0.92552 0.96090
0.93289 0.90680 0.92406 0.76776 0.87523 0.85804 0.89101 0.68704
0.81782 0.90920 0.90823
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.83 8.51 71.98 0.61 -5.22 16
2 C -0.12 -6.02 5.45 30.59 0.17 -5.86 16
3 C 0.28 15.68 2.24 44.25 0.10 15.78 16
4 H -0.01 -0.67 7.58 -2.39 -0.02 -0.69 16
5 C -0.55 -31.63 8.73 25.60 0.22 -31.41 16
6 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16
7 C 0.02 1.03 5.29 84.65 0.45 1.48 16
8 N -0.91 -54.25 11.29 21.45 0.24 -54.00 16
9 Si 0.97 44.19 29.54 68.60 2.03 46.22 16
10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
12 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16
13 N -0.69 -33.31 5.02 -449.55 -2.26 -35.57 16
14 C 0.59 28.04 5.80 86.60 0.50 28.54 16
15 O -0.58 -32.24 14.24 -4.11 -0.06 -32.30 16
16 C -0.19 -7.44 6.06 -19.05 -0.12 -7.55 16
17 C 0.07 2.07 7.31 25.19 0.18 2.25 16
18 C -0.08 -1.68 10.21 71.23 0.73 -0.95 16
19 O -0.15 -4.14 10.51 0.53 0.01 -4.13 16
20 C 0.29 8.41 8.60 84.64 0.73 9.14 16
21 N -0.52 -10.52 10.42 -310.79 -3.24 -13.76 16
22 C 0.42 4.69 11.48 180.13 2.07 6.76 16
23 N -0.53 -10.17 3.00 -677.55 -2.03 -12.20 16
24 C 0.06 0.61 10.16 127.77 1.30 1.91 16
25 C 0.54 19.08 7.47 84.87 0.63 19.71 16
26 O -0.56 -26.06 17.21 -5.01 -0.09 -26.15 16
27 C -0.31 -11.15 6.39 -19.90 -0.13 -11.28 16
28 H 0.05 2.05 5.36 -2.39 -0.01 2.04 16
29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
30 H 0.02 1.05 7.84 -2.39 -0.02 1.03 16
31 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16
32 H 0.07 4.25 5.95 -2.39 -0.01 4.23 16
33 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16
34 H 0.40 17.29 8.53 -92.71 -0.79 16.50 16
35 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16
36 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16
37 H 0.09 2.19 7.59 -2.39 -0.02 2.18 16
38 H 0.30 -1.70 7.80 -2.92 -0.02 -1.72 16
39 H 0.16 -0.59 7.72 -2.39 -0.02 -0.61 16
40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
41 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16
Total: -1.00 -94.16 349.53 2.35 -91.80
By element:
Atomic # 1 Polarization: 16.48 SS G_CDS: 0.30 Total: 16.78 kcal
Atomic # 6 Polarization: 15.86 SS G_CDS: 7.45 Total: 23.31 kcal
Atomic # 7 Polarization: -108.25 SS G_CDS: -7.28 Total: -115.53 kcal
Atomic # 8 Polarization: -62.44 SS G_CDS: -0.14 Total: -62.58 kcal
Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal
Total: -94.16 2.35 -91.80 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183803874.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.271 kcal
(2) G-P(sol) polarization free energy of solvation -94.155 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds