Wall clock time and date at job start Tue Mar 31 2020 14:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47068 * 2 1 4 4 C 1.46494 * 120.00394 * 270.00280 * 3 2 1 5 5 C 1.50705 * 109.47188 * 270.00116 * 4 3 2 6 6 H 1.08004 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00270 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99939 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00278 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47125 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47074 * 119.99970 * 9 7 5 12 12 H 1.48500 * 109.47062 * 240.00131 * 9 7 5 13 13 C 1.34778 * 119.99606 * 90.00145 * 3 2 1 14 14 O 1.21596 * 119.99787 * 179.97438 * 13 3 2 15 15 N 1.34770 * 120.00097 * 0.02562 * 13 3 2 16 16 C 1.40101 * 120.00118 * 184.43673 * 15 13 3 17 17 C 1.38739 * 120.10095 * 325.34472 * 16 15 13 18 18 C 1.38315 * 120.23060 * 180.02562 * 17 16 15 19 19 C 1.38163 * 120.24381 * 359.97429 * 18 17 16 20 20 C 1.38697 * 119.96073 * 0.02562 * 19 18 17 21 21 C 1.39144 * 120.10652 * 145.31767 * 16 15 13 22 22 O 1.35610 * 132.99634 * 359.97438 * 21 16 15 23 23 C 1.34207 * 109.15986 * 180.02562 * 22 21 16 24 24 O 1.21605 * 125.29162 * 179.97438 * 23 22 21 25 25 N 1.34783 * 109.42092 * 359.97438 * 23 22 21 26 26 C 1.46504 * 126.24771 * 180.02562 * 25 23 22 27 27 H 1.08995 * 109.47423 * 299.99742 * 1 2 3 28 28 H 1.09005 * 109.47424 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47548 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47201 * 240.00267 * 2 1 3 31 31 H 1.09000 * 109.47466 * 120.00652 * 2 1 3 32 32 H 1.09003 * 109.47213 * 29.99440 * 4 3 2 33 33 H 1.09001 * 109.47685 * 149.99858 * 4 3 2 34 34 H 0.96997 * 120.00274 * 180.02562 * 8 7 5 35 35 H 0.96998 * 120.00103 * 4.43145 * 15 13 3 36 36 H 1.08002 * 119.88870 * 359.97255 * 17 16 15 37 37 H 1.07997 * 119.87465 * 179.70029 * 18 17 16 38 38 H 1.07998 * 120.01740 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.47055 * 0.02562 * 26 25 23 40 40 H 1.08995 * 109.47075 * 120.02069 * 26 25 23 41 41 H 1.09000 * 109.46776 * 240.02535 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8779 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0969 -3.4169 10 1 6.6015 1.2426 -2.4158 11 1 5.9213 1.4174 -4.7373 12 1 6.6203 3.3983 -3.5256 13 6 2.2429 2.0165 1.1673 14 8 2.6486 3.1628 1.1673 15 7 2.0188 1.3809 2.3344 16 6 2.1627 2.0696 3.5459 17 6 3.1393 3.0460 3.6795 18 6 3.2841 3.7271 4.8746 19 6 2.4571 3.4405 5.9436 20 6 1.4778 2.4661 5.8200 21 6 1.3264 1.7768 4.6188 22 8 0.3069 0.8980 4.7836 23 6 -0.1778 1.0143 6.0297 24 8 -1.0972 0.3646 6.4894 25 7 0.5130 1.9630 6.6925 26 6 0.2915 2.3877 8.0771 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0283 33 1 2.0954 3.1412 -1.1383 34 1 3.6748 3.5159 -4.4442 35 1 1.7577 0.4468 2.3356 36 1 3.7892 3.2745 2.8478 37 1 4.0493 4.4827 4.9738 38 1 2.5736 3.9743 6.8752 39 1 -0.5302 1.8142 8.5060 40 1 1.1970 2.2161 8.6590 41 1 0.0428 3.4488 8.0962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269951323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:47 Heat of formation + Delta-G solvation = -48.748063 kcal Electronic energy + Delta-G solvation = -26846.495074 eV Core-core repulsion = 22920.776563 eV Total energy + Delta-G solvation = -3925.718511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.38640 -41.63691 -39.66067 -38.59588 -37.49296 -36.86019 -35.64018 -34.70152 -31.68954 -30.91545 -30.72911 -28.84148 -28.65910 -25.26830 -24.53623 -24.46516 -23.77480 -22.60824 -21.15239 -19.74552 -19.57974 -18.73828 -18.61909 -18.35125 -17.79923 -17.22586 -16.61696 -16.48168 -16.04360 -15.85641 -15.69526 -15.30440 -15.12411 -14.98093 -14.77425 -14.43257 -14.32106 -13.71435 -13.44988 -13.39953 -13.32333 -13.15029 -13.05884 -12.83311 -12.71842 -12.53235 -12.28670 -12.21231 -11.98421 -11.97239 -11.67728 -11.16792 -10.89829 -10.61848 -9.61956 -9.34271 -9.02980 -8.19277 -6.33885 -0.03434 0.07484 0.98580 1.23448 1.39739 1.41572 1.52499 1.58801 1.68702 2.08994 2.40737 2.60366 2.87139 3.10864 3.37404 3.56429 3.91722 3.99404 4.14163 4.16622 4.29787 4.32359 4.47056 4.48057 4.59654 4.74197 4.79286 4.80958 4.90217 4.97097 5.10505 5.18538 5.20990 5.30482 5.35294 5.44777 5.57382 5.62897 5.76109 5.98159 6.06605 6.08026 6.45418 6.74849 6.94317 7.32317 7.54999 8.87690 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.003313 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.522263 B = 8448.836704 C = 9423.695205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.611 5.611 4 C 0.278 3.722 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.272 1.272 12 H -0.281 1.281 13 C 0.699 3.301 14 O -0.608 6.608 15 N -0.681 5.681 16 C 0.200 3.800 17 C -0.129 4.129 18 C -0.062 4.062 19 C -0.100 4.100 20 C 0.088 3.912 21 C -0.025 4.025 22 O -0.249 6.249 23 C 0.625 3.375 24 O -0.527 6.527 25 N -0.536 5.536 26 C 0.088 3.912 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.002 0.998 34 H 0.267 0.733 35 H 0.416 0.584 36 H 0.135 0.865 37 H 0.177 0.823 38 H 0.181 0.819 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -2.404 23.224 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.345 5.345 4 C 0.157 3.843 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.207 1.207 13 C 0.401 3.599 14 O -0.487 6.487 15 N -0.331 5.331 16 C 0.103 3.897 17 C -0.151 4.151 18 C -0.081 4.081 19 C -0.121 4.121 20 C -0.010 4.010 21 C -0.074 4.074 22 O -0.155 6.155 23 C 0.381 3.619 24 O -0.413 6.413 25 N -0.268 5.268 26 C -0.050 4.050 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.021 0.979 34 H 0.076 0.924 35 H 0.255 0.745 36 H 0.153 0.847 37 H 0.194 0.806 38 H 0.199 0.801 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.531 -2.064 23.112 23.341 hybrid contribution 0.282 -0.632 -1.002 1.217 sum -2.249 -2.695 22.110 22.387 Atomic orbital electron populations 1.22160 0.94825 1.03527 1.01512 1.21684 0.95082 0.81607 1.03807 1.47507 1.67017 1.15058 1.04871 1.18696 0.95434 0.91471 0.78679 1.21731 0.97751 1.31924 1.06472 0.92754 1.25819 1.02262 0.94485 0.96402 1.70056 1.37674 1.34256 1.14807 0.85363 0.79146 0.77981 0.78258 1.19132 1.19754 1.20695 1.15979 0.78851 0.84327 0.80774 1.90844 1.53171 1.18473 1.86230 1.42688 1.72917 1.14842 1.02666 1.16624 0.93939 0.96920 0.82246 1.21335 0.97014 0.96577 1.00133 1.21318 0.98767 0.98295 0.89734 1.20479 0.93170 0.96459 1.01965 1.18479 0.95294 0.99439 0.87825 1.18691 0.93752 0.97450 0.97461 1.84896 1.44182 1.54316 1.32078 1.18680 0.82869 0.81499 0.78865 1.91103 1.30077 1.51464 1.68695 1.45836 1.30591 1.35125 1.15277 1.22254 1.05173 1.02873 0.74663 0.93412 0.93493 0.88547 0.89634 0.89480 0.95576 0.97940 0.92427 0.74528 0.84681 0.80591 0.80126 0.88877 0.87491 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.24 71.98 0.74 -3.69 16 2 C 0.10 3.18 5.93 86.38 0.51 3.69 16 3 N -0.61 -26.13 2.46 -844.19 -2.07 -28.20 16 4 C 0.28 14.85 5.16 85.64 0.44 15.29 16 5 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 9 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 C 0.70 29.79 8.13 179.06 1.45 31.24 16 14 O -0.61 -30.52 13.34 -4.02 -0.05 -30.58 16 15 N -0.68 -22.61 5.23 -316.94 -1.66 -24.27 16 16 C 0.20 6.05 6.32 38.16 0.24 6.29 16 17 C -0.13 -3.64 8.69 22.41 0.19 -3.45 16 18 C -0.06 -1.11 10.03 22.27 0.22 -0.88 16 19 C -0.10 -1.42 10.03 22.36 0.22 -1.20 16 20 C 0.09 1.80 6.84 38.30 0.26 2.07 16 21 C -0.02 -0.68 7.27 22.75 0.17 -0.51 16 22 O -0.25 -7.38 10.72 8.18 0.09 -7.29 16 23 C 0.63 17.32 9.07 129.79 1.18 18.50 16 24 O -0.53 -17.09 17.57 19.17 0.34 -16.75 16 25 N -0.54 -10.48 3.21 -784.57 -2.52 -12.99 16 26 C 0.09 0.81 11.20 127.77 1.43 2.24 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.76 8.07 -2.38 -0.02 2.74 16 31 H 0.09 2.21 6.30 -2.39 -0.02 2.20 16 32 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 34 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.42 11.70 6.52 -92.71 -0.60 11.10 16 36 H 0.14 4.69 6.19 -2.91 -0.02 4.67 16 37 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.09 0.96 7.72 -2.39 -0.02 0.94 16 40 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 41 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -78.84 353.66 4.68 -74.16 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.47 Total: 14.50 kcal Atomic # 6 Polarization: 32.50 SS G_CDS: 7.77 Total: 40.27 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -5.96 Total: -120.54 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: 0.37 Total: -54.62 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -78.84 4.68 -74.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269951323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.416 kcal (2) G-P(sol) polarization free energy of solvation -78.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds