Wall clock time and date at job start Tue Mar 31 2020 14:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35086 * 120.50070 * 2 1 4 4 O 1.21301 * 120.12685 * 1.61258 * 3 2 1 5 5 C 1.50752 * 119.74070 * 181.63885 * 3 2 1 6 6 O 1.42989 * 109.62609 * 328.67465 * 5 3 2 7 7 C 1.36093 * 116.84424 * 46.19036 * 6 5 3 8 8 C 1.38393 * 120.58137 * 146.82870 * 7 6 5 9 9 C 1.38253 * 119.96640 * 180.38149 * 8 7 6 10 10 C 1.38866 * 120.18167 * 0.22940 * 9 8 7 11 11 N 1.40139 * 119.97079 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00441 * 324.88976 * 11 10 9 13 13 O 1.21592 * 119.99668 * 4.61702 * 12 11 10 14 14 N 1.34773 * 120.00202 * 184.61225 * 12 11 10 15 15 C 1.46498 * 119.99933 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46936 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46758 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00321 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99697 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99740 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00148 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46941 * 90.00314 * 21 19 17 23 23 H 1.48502 * 109.47347 * 210.00358 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00672 * 21 19 17 25 25 C 1.38844 * 120.05077 * 0.02562 * 10 9 8 26 26 C 1.38452 * 119.76649 * 0.02562 * 25 10 9 27 27 H 1.09006 * 109.46779 * 270.02120 * 1 2 3 28 28 H 1.08997 * 109.47424 * 30.01804 * 1 2 3 29 29 H 1.09001 * 109.47575 * 150.02176 * 1 2 3 30 30 H 1.08998 * 109.44436 * 88.72267 * 5 3 2 31 31 H 1.08998 * 109.44050 * 208.65914 * 5 3 2 32 32 H 1.07994 * 120.01691 * 0.65891 * 8 7 6 33 33 H 1.08000 * 119.91590 * 180.24962 * 9 8 7 34 34 H 0.96999 * 120.00053 * 144.89402 * 11 10 9 35 35 H 0.97000 * 120.00045 * 0.02562 * 14 12 11 36 36 H 1.09004 * 109.47448 * 300.00597 * 15 14 12 37 37 H 1.08997 * 109.46683 * 60.00421 * 15 14 12 38 38 H 1.08998 * 109.47401 * 299.99660 * 16 15 14 39 39 H 1.08997 * 109.47386 * 60.00490 * 16 15 14 40 40 H 0.97006 * 119.99763 * 179.97438 * 20 19 17 41 41 H 1.07993 * 120.11011 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1506 1.1639 0.0000 4 8 1.5559 2.2208 0.0295 5 6 3.6575 1.1442 -0.0374 6 8 4.1394 -0.0225 0.6342 7 6 3.5308 -1.2015 0.3312 8 6 4.2484 -2.3848 0.3320 9 6 3.6192 -3.5742 0.0145 10 6 2.2691 -3.5848 -0.3102 11 7 1.6358 -4.7929 -0.6319 12 6 2.3089 -5.7491 -1.3021 13 8 3.4889 -5.5988 -1.5540 14 7 1.6741 -6.8719 -1.6929 15 6 2.4056 -7.9110 -2.4218 16 6 1.4597 -9.0694 -2.7447 17 6 2.2125 -10.1386 -3.4940 18 1 3.2605 -10.0050 -3.7179 19 6 1.5628 -11.2868 -3.8946 20 7 2.2195 -12.2196 -4.5490 21 14 -0.2501 -11.5176 -3.5080 22 1 -1.0672 -10.9652 -4.6182 23 1 -0.5425 -12.9650 -3.3509 24 1 -0.5820 -10.8058 -2.2476 25 6 1.5464 -2.3993 -0.3174 26 6 2.1768 -1.2080 -0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 3.9946 1.1315 -1.0739 31 1 4.0444 2.0341 0.4591 32 1 5.2983 -2.3798 0.5848 33 1 4.1790 -4.4978 0.0193 34 1 0.7130 -4.9409 -0.3722 35 1 0.7327 -6.9917 -1.4921 36 1 2.8001 -7.4952 -3.3490 37 1 3.2292 -8.2744 -1.8073 38 1 1.0650 -9.4854 -1.8178 39 1 0.6364 -8.7057 -3.3594 40 1 1.7625 -13.0277 -4.8305 41 1 0.4963 -2.4064 -0.5694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273211373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:58 Heat of formation + Delta-G solvation = -55.966664 kcal Electronic energy + Delta-G solvation = -25601.946915 eV Core-core repulsion = 21675.915381 eV Total energy + Delta-G solvation = -3926.031533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88303 -40.43684 -39.07094 -37.92195 -36.28186 -35.08727 -34.38643 -32.84889 -30.74611 -30.33162 -29.79833 -29.06499 -26.34456 -24.97137 -23.82988 -22.66003 -21.37089 -20.88998 -19.69741 -19.44415 -18.46880 -17.63937 -17.54336 -16.91128 -16.63513 -16.01227 -15.66580 -15.25113 -15.17588 -14.87194 -14.71530 -14.56729 -14.20417 -14.00409 -13.85545 -13.65986 -13.38944 -13.12963 -12.73343 -12.66233 -12.61293 -11.85198 -11.63505 -11.55713 -11.30944 -10.92677 -10.52788 -10.46227 -10.37560 -10.07630 -9.96688 -9.76837 -9.39024 -8.83228 -8.68643 -8.61169 -7.87119 -6.15864 -4.16456 0.76806 0.91389 1.90575 2.08202 2.57717 2.94982 3.15762 3.20750 3.28107 3.29585 3.51454 3.56196 4.23771 4.27310 4.32665 4.47625 4.62861 4.70070 4.82589 4.89064 4.96442 5.13875 5.16853 5.22335 5.27480 5.46167 5.61897 5.88549 5.97164 6.07768 6.13697 6.18202 6.44686 6.48044 6.60960 6.63114 6.83465 6.99038 7.12024 7.16071 7.27188 7.60563 8.00443 8.38621 8.60062 8.88459 9.43784 10.97052 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.002174 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.977657 B =12876.623134 C =13531.813686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.551 5.551 3 C 0.488 3.512 4 O -0.514 6.514 5 C 0.052 3.948 6 O -0.302 6.302 7 C 0.054 3.946 8 C -0.084 4.084 9 C -0.109 4.109 10 C 0.187 3.813 11 N -0.691 5.691 12 C 0.699 3.301 13 O -0.574 6.574 14 N -0.734 5.734 15 C 0.147 3.853 16 C -0.022 4.022 17 C -0.524 4.524 18 H 0.077 0.923 19 C 0.069 3.931 20 N -0.897 5.897 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.267 1.267 25 C -0.158 4.158 26 C 0.112 3.888 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.156 0.844 34 H 0.406 0.594 35 H 0.394 0.606 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 24.626 11.839 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.277 5.277 3 C 0.277 3.723 4 O -0.389 6.389 5 C -0.026 4.026 6 O -0.217 6.217 7 C 0.007 3.993 8 C -0.104 4.104 9 C -0.130 4.130 10 C 0.090 3.910 11 N -0.339 5.339 12 C 0.399 3.601 13 O -0.451 6.451 14 N -0.387 5.387 15 C 0.024 3.976 16 C -0.060 4.060 17 C -0.562 4.562 18 H 0.095 0.905 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.710 3.290 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.181 4.181 26 C 0.017 3.983 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.242 0.758 35 H 0.227 0.773 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.372 25.144 11.591 27.788 hybrid contribution -2.246 -0.395 0.096 2.283 sum -4.619 24.749 11.687 27.757 Atomic orbital electron populations 1.21891 0.77229 1.04209 1.03151 1.45515 1.07701 1.04367 1.70107 1.21615 0.91454 0.83273 0.75993 1.90769 1.70866 1.29535 1.47738 1.23166 0.88930 0.89415 1.01083 1.86248 1.58673 1.13183 1.63602 1.18575 0.88979 0.86902 1.04812 1.20459 1.00274 0.89220 1.00423 1.21306 0.93848 0.99193 0.98636 1.17179 0.92441 0.84093 0.97272 1.42698 1.16529 1.14880 1.59797 1.16001 0.85297 0.80176 0.78628 1.90919 1.13821 1.79124 1.61202 1.45572 1.14000 1.18628 1.60510 1.21477 0.95201 0.86016 0.94885 1.19803 0.95587 0.93440 0.97124 1.20892 0.98526 1.00874 1.35922 0.90531 1.25005 0.98216 0.95651 0.94428 1.69900 1.36691 1.08431 1.38469 0.86747 0.85618 0.77429 0.79216 1.20251 1.21254 1.19126 1.20254 1.01136 0.89276 1.07435 1.17656 0.90582 0.86073 1.04001 0.91399 0.89600 0.89969 0.88331 0.83839 0.83870 0.82642 0.75817 0.77276 0.91831 0.91750 0.95956 0.96426 0.92497 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 10.23 59.84 0.61 1.14 16 2 N -0.55 -5.18 3.12 -120.59 -0.38 -5.55 16 3 C 0.49 4.92 7.67 -10.82 -0.08 4.84 16 4 O -0.51 -6.44 16.77 5.54 0.09 -6.35 16 5 C 0.05 0.39 7.17 36.03 0.26 0.65 16 6 O -0.30 -2.90 10.45 -20.04 -0.21 -3.11 16 7 C 0.05 0.55 6.45 -39.09 -0.25 0.30 16 8 C -0.08 -0.86 9.99 -39.52 -0.39 -1.25 16 9 C -0.11 -1.26 8.69 -39.34 -0.34 -1.61 16 10 C 0.19 2.02 6.30 -83.60 -0.53 1.49 16 11 N -0.69 -7.26 5.35 -14.18 -0.08 -7.33 16 12 C 0.70 10.27 8.41 -86.92 -0.73 9.54 16 13 O -0.57 -10.52 13.77 5.28 0.07 -10.45 16 14 N -0.73 -10.75 5.56 -65.22 -0.36 -11.12 16 15 C 0.15 2.78 5.61 -4.04 -0.02 2.75 16 16 C -0.02 -0.47 4.16 -27.88 -0.12 -0.58 16 17 C -0.52 -14.16 9.66 -34.44 -0.33 -14.49 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 21 Si 0.88 20.38 27.47 -169.99 -4.67 15.71 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 25 C -0.16 -1.42 9.27 -39.28 -0.36 -1.79 16 26 C 0.11 1.10 6.38 -83.51 -0.53 0.56 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.62 7.49 -51.93 -0.39 0.23 16 29 H 0.08 0.41 5.95 -51.93 -0.31 0.10 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.16 2.07 6.21 -52.49 -0.33 1.75 16 34 H 0.41 2.85 8.84 -40.82 -0.36 2.48 16 35 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 0.90 6.11 -52.49 -0.32 0.58 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -34.35 345.60 -7.41 -41.76 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.94 Total: 3.77 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -2.92 Total: 3.38 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.04 Total: -49.93 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.04 Total: -19.91 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.67 Total: 15.71 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.35 -7.41 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273211373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.207 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds