Wall clock time and date at job start Tue Mar 31 2020 14:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35086 * 120.50070 * 2 1 4 4 O 1.21301 * 120.12685 * 1.61258 * 3 2 1 5 5 C 1.50752 * 119.74070 * 181.63885 * 3 2 1 6 6 O 1.42989 * 109.62609 * 328.67465 * 5 3 2 7 7 C 1.36093 * 116.84424 * 46.19036 * 6 5 3 8 8 C 1.38393 * 120.58137 * 146.82870 * 7 6 5 9 9 C 1.38253 * 119.96640 * 180.38149 * 8 7 6 10 10 C 1.38866 * 120.18167 * 0.22940 * 9 8 7 11 11 N 1.40139 * 119.97079 * 179.97438 * 10 9 8 12 12 C 1.34782 * 120.00441 * 324.88976 * 11 10 9 13 13 O 1.21592 * 119.99668 * 4.61702 * 12 11 10 14 14 N 1.34773 * 120.00202 * 184.61225 * 12 11 10 15 15 C 1.46498 * 119.99933 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.46936 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46758 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00321 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99697 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99740 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00148 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46941 * 90.00314 * 21 19 17 23 23 H 1.48502 * 109.47347 * 210.00358 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00672 * 21 19 17 25 25 C 1.38844 * 120.05077 * 0.02562 * 10 9 8 26 26 C 1.38452 * 119.76649 * 0.02562 * 25 10 9 27 27 H 1.09006 * 109.46779 * 270.02120 * 1 2 3 28 28 H 1.08997 * 109.47424 * 30.01804 * 1 2 3 29 29 H 1.09001 * 109.47575 * 150.02176 * 1 2 3 30 30 H 1.08998 * 109.44436 * 88.72267 * 5 3 2 31 31 H 1.08998 * 109.44050 * 208.65914 * 5 3 2 32 32 H 1.07994 * 120.01691 * 0.65891 * 8 7 6 33 33 H 1.08000 * 119.91590 * 180.24962 * 9 8 7 34 34 H 0.96999 * 120.00053 * 144.89402 * 11 10 9 35 35 H 0.97000 * 120.00045 * 0.02562 * 14 12 11 36 36 H 1.09004 * 109.47448 * 300.00597 * 15 14 12 37 37 H 1.08997 * 109.46683 * 60.00421 * 15 14 12 38 38 H 1.08998 * 109.47401 * 299.99660 * 16 15 14 39 39 H 1.08997 * 109.47386 * 60.00490 * 16 15 14 40 40 H 0.97006 * 119.99763 * 179.97438 * 20 19 17 41 41 H 1.07993 * 120.11011 * 180.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1506 1.1639 0.0000 4 8 1.5559 2.2208 0.0295 5 6 3.6575 1.1442 -0.0374 6 8 4.1394 -0.0225 0.6342 7 6 3.5308 -1.2015 0.3312 8 6 4.2484 -2.3848 0.3320 9 6 3.6192 -3.5742 0.0145 10 6 2.2691 -3.5848 -0.3102 11 7 1.6358 -4.7929 -0.6319 12 6 2.3089 -5.7491 -1.3021 13 8 3.4889 -5.5988 -1.5540 14 7 1.6741 -6.8719 -1.6929 15 6 2.4056 -7.9110 -2.4218 16 6 1.4597 -9.0694 -2.7447 17 6 2.2125 -10.1386 -3.4940 18 1 3.2605 -10.0050 -3.7179 19 6 1.5628 -11.2868 -3.8946 20 7 2.2195 -12.2196 -4.5490 21 14 -0.2501 -11.5176 -3.5080 22 1 -1.0672 -10.9652 -4.6182 23 1 -0.5425 -12.9650 -3.3509 24 1 -0.5820 -10.8058 -2.2476 25 6 1.5464 -2.3993 -0.3174 26 6 2.1768 -1.2080 -0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 3.9946 1.1315 -1.0739 31 1 4.0444 2.0341 0.4591 32 1 5.2983 -2.3798 0.5848 33 1 4.1790 -4.4978 0.0193 34 1 0.7130 -4.9409 -0.3722 35 1 0.7327 -6.9917 -1.4921 36 1 2.8001 -7.4952 -3.3490 37 1 3.2292 -8.2744 -1.8073 38 1 1.0650 -9.4854 -1.8178 39 1 0.6364 -8.7057 -3.3594 40 1 1.7625 -13.0277 -4.8305 41 1 0.4963 -2.4064 -0.5694 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273211373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:57 Heat of formation + Delta-G solvation = -81.770269 kcal Electronic energy + Delta-G solvation = -25603.065843 eV Core-core repulsion = 21675.915381 eV Total energy + Delta-G solvation = -3927.150462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.62789 -41.48658 -39.92077 -38.74672 -37.16278 -36.47988 -35.38477 -34.72204 -32.11590 -31.31651 -30.52795 -29.93401 -27.23451 -26.44319 -24.73742 -23.43610 -22.75929 -22.30729 -20.55998 -20.18865 -19.61318 -18.90892 -18.36624 -18.26748 -17.52760 -16.90722 -16.65373 -16.35661 -16.09729 -16.01547 -15.75072 -15.55420 -15.35284 -15.26607 -14.94261 -14.58853 -14.55309 -14.29151 -13.99438 -13.45588 -13.32326 -13.16752 -13.03841 -12.60203 -12.36497 -12.14987 -12.13767 -11.74584 -11.70297 -11.51066 -11.35431 -11.18074 -10.76454 -10.70709 -10.07149 -9.47464 -8.69057 -8.27352 -6.34465 -0.03533 0.13989 1.15028 1.37122 1.41408 1.44120 1.55001 1.58692 2.02185 2.27801 2.39115 2.68410 2.87393 3.08023 3.21078 3.56917 3.92535 4.04566 4.07645 4.11309 4.30571 4.32606 4.39400 4.44450 4.48765 4.57635 4.68829 4.75091 4.79241 4.87498 5.12767 5.22464 5.24531 5.35778 5.44609 5.46183 5.66891 5.69674 5.78219 5.96711 6.24929 6.25463 6.54560 6.73404 7.01902 7.29886 7.48408 8.89321 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.030528 B = 0.002174 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.977657 B =12876.623134 C =13531.813686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.553 5.553 3 C 0.482 3.518 4 O -0.544 6.544 5 C 0.051 3.949 6 O -0.309 6.309 7 C 0.050 3.950 8 C -0.087 4.087 9 C -0.123 4.123 10 C 0.172 3.828 11 N -0.669 5.669 12 C 0.699 3.301 13 O -0.614 6.614 14 N -0.723 5.723 15 C 0.164 3.836 16 C -0.013 4.013 17 C -0.537 4.537 18 H 0.029 0.971 19 C 0.002 3.998 20 N -0.952 5.952 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.233 1.233 25 C -0.140 4.140 26 C 0.107 3.893 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.427 0.573 35 H 0.413 0.587 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 26.186 13.029 29.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.278 5.278 3 C 0.272 3.728 4 O -0.422 6.422 5 C -0.027 4.027 6 O -0.224 6.224 7 C 0.004 3.996 8 C -0.106 4.106 9 C -0.144 4.144 10 C 0.075 3.925 11 N -0.319 5.319 12 C 0.399 3.601 13 O -0.494 6.494 14 N -0.378 5.378 15 C 0.040 3.960 16 C -0.051 4.051 17 C -0.576 4.576 18 H 0.048 0.952 19 C -0.195 4.195 20 N -0.592 5.592 21 Si 0.782 3.218 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.156 1.156 25 C -0.163 4.163 26 C 0.012 3.988 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.266 0.734 35 H 0.250 0.750 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.299 26.745 12.825 30.131 hybrid contribution -1.228 -0.792 -0.269 1.485 sum -6.526 25.953 12.557 29.560 Atomic orbital electron populations 1.22097 0.75887 1.05121 1.03989 1.45656 1.08692 1.04001 1.69481 1.22045 0.92432 0.83018 0.75305 1.90756 1.71638 1.30459 1.49324 1.23416 0.87460 0.89325 1.02453 1.86238 1.58784 1.13396 1.63993 1.18692 0.89391 0.87160 1.04406 1.20517 1.00892 0.88895 1.00315 1.21207 0.94513 0.98864 0.99851 1.17266 0.92376 0.84591 0.98235 1.42332 1.17141 1.13836 1.58564 1.16067 0.84841 0.80527 0.78615 1.90910 1.15841 1.79942 1.62700 1.45110 1.14657 1.17834 1.60211 1.20929 0.94541 0.86332 0.94245 1.19656 0.95687 0.92570 0.97162 1.21263 0.97153 1.02814 1.36356 0.95220 1.26101 1.04234 0.95092 0.94111 1.70083 1.39315 1.09364 1.40403 0.85534 0.78222 0.77458 0.80599 1.19134 1.21610 1.15630 1.20398 1.02242 0.87991 1.05683 1.17754 0.90548 0.86528 1.03974 0.90619 0.90120 0.87657 0.86494 0.81597 0.82808 0.84856 0.73424 0.75017 0.93760 0.93564 0.94302 0.94526 0.92426 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.23 127.77 1.31 2.08 16 2 N -0.55 -9.17 3.12 -653.65 -2.04 -11.21 16 3 C 0.48 8.95 7.67 87.62 0.67 9.62 16 4 O -0.54 -13.05 16.77 -3.09 -0.05 -13.11 16 5 C 0.05 0.67 7.17 71.25 0.51 1.18 16 6 O -0.31 -5.43 10.45 -94.60 -0.99 -6.42 16 7 C 0.05 0.96 6.45 22.59 0.15 1.10 16 8 C -0.09 -1.70 9.99 22.31 0.22 -1.48 16 9 C -0.12 -2.81 8.69 22.42 0.19 -2.62 16 10 C 0.17 3.38 6.30 38.11 0.24 3.62 16 11 N -0.67 -12.43 5.35 -317.03 -1.70 -14.12 16 12 C 0.70 19.64 8.41 179.05 1.51 21.14 16 13 O -0.61 -22.69 13.77 -4.01 -0.06 -22.75 16 14 N -0.72 -19.75 5.56 -478.53 -2.66 -22.41 16 15 C 0.16 6.16 5.61 86.38 0.48 6.64 16 16 C -0.01 -0.54 4.16 29.85 0.12 -0.41 16 17 C -0.54 -29.60 9.66 25.60 0.25 -29.35 16 18 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 19 C 0.00 0.09 5.47 84.66 0.46 0.55 16 20 N -0.95 -58.31 13.96 21.45 0.30 -58.01 16 21 Si 0.96 40.82 27.47 68.60 1.88 42.70 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 25 C -0.14 -2.12 9.27 22.47 0.21 -1.91 16 26 C 0.11 1.85 6.38 38.13 0.24 2.10 16 27 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.08 1.02 7.49 -2.39 -0.02 1.00 16 29 H 0.11 0.64 5.95 -2.39 -0.01 0.63 16 30 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.13 3.68 6.21 -2.91 -0.02 3.66 16 34 H 0.43 4.38 8.84 -92.71 -0.82 3.56 16 35 H 0.41 8.10 8.49 -92.71 -0.79 7.32 16 36 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 39 H 0.04 1.40 7.57 -2.39 -0.02 1.39 16 40 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 41 H 0.17 1.44 6.11 -2.91 -0.02 1.42 16 Total: -1.00 -77.48 345.60 0.70 -76.78 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -0.56 Total: 16.27 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.57 Total: 12.27 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -6.10 Total: -105.76 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.10 Total: -42.27 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.70 kcal Total: -77.48 0.70 -76.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273211373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.990 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds