Wall clock time and date at job start Tue Mar 31 2020 14:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47424 * 2 1 4 4 C 1.46494 * 120.00116 * 274.49934 * 3 2 1 5 5 C 1.50701 * 109.46966 * 269.99942 * 4 3 2 6 6 H 1.08005 * 119.99967 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00122 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99981 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47122 * 90.00110 * 9 7 5 11 11 H 1.48500 * 109.46961 * 209.99538 * 9 7 5 12 12 H 1.48490 * 109.47292 * 329.99696 * 9 7 5 13 13 C 1.34779 * 119.99950 * 94.49306 * 3 2 1 14 14 O 1.21604 * 120.00447 * 5.01315 * 13 3 2 15 15 C 1.47429 * 120.00062 * 185.00689 * 13 3 2 16 16 C 1.38046 * 126.41562 * 311.07670 * 15 13 3 17 17 N 1.34264 * 107.41770 * 179.97438 * 16 15 13 18 18 C 1.46499 * 125.75404 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46940 * 124.99513 * 18 17 16 20 20 N 1.39934 * 108.48783 * 0.25627 * 17 16 15 21 21 C 1.30443 * 108.89843 * 359.55135 * 20 17 16 22 22 C 1.50713 * 125.98675 * 180.16034 * 21 20 17 23 23 F 1.39894 * 109.46945 * 270.33122 * 22 21 20 24 24 F 1.39899 * 109.47100 * 30.32950 * 22 21 20 25 25 F 1.39892 * 109.46826 * 150.33231 * 22 21 20 26 26 H 1.09000 * 109.47096 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47381 * 300.00167 * 1 2 3 28 28 H 1.09000 * 109.46826 * 60.00176 * 1 2 3 29 29 H 1.08999 * 109.47381 * 239.99833 * 2 1 3 30 30 H 1.09000 * 109.46826 * 119.99824 * 2 1 3 31 31 H 1.09005 * 109.47528 * 29.99529 * 4 3 2 32 32 H 1.09002 * 109.47492 * 150.00060 * 4 3 2 33 33 H 0.96994 * 120.00269 * 180.02562 * 8 7 5 34 34 H 1.08001 * 126.29178 * 359.97438 * 16 15 13 35 35 H 1.08992 * 109.46931 * 244.99954 * 18 17 16 36 36 H 1.09003 * 109.47245 * 4.99766 * 18 17 16 37 37 H 1.09000 * 109.46943 * 179.97438 * 19 18 17 38 38 H 1.08998 * 109.47562 * 300.00671 * 19 18 17 39 39 H 1.09003 * 109.46945 * 60.00069 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1688 2.1049 -1.2648 5 6 3.5558 1.8809 -1.8099 6 1 4.2554 1.2616 -1.2681 7 6 3.9319 2.4673 -2.9997 8 7 3.0802 3.2217 -3.6592 9 14 5.6514 2.1901 -3.6750 10 1 5.6515 0.9920 -4.5523 11 1 6.0724 3.3783 -4.4599 12 1 6.5972 1.9798 -2.5497 13 6 2.3293 1.9860 1.1636 14 8 2.2919 1.3581 2.2043 15 6 2.7148 3.4089 1.1748 16 6 3.6474 4.0118 0.3548 17 7 3.6964 5.3112 0.6891 18 6 4.5562 6.3227 0.0695 19 6 3.6967 7.4854 -0.4308 20 7 2.7924 5.5350 1.7335 21 6 2.1984 4.4112 2.0263 22 6 1.1501 4.2148 3.0912 23 9 1.7708 3.8915 4.3025 24 9 0.4144 5.3947 3.2445 25 9 0.2923 3.1758 2.7149 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.4333 1.7402 -1.9819 32 1 2.0130 3.1703 -1.0946 33 1 3.3447 3.6340 -4.4964 34 1 4.2305 3.5272 -0.4144 35 1 5.2724 6.6901 0.8043 36 1 5.0919 5.8794 -0.7699 37 1 4.3365 8.2382 -0.8913 38 1 2.9804 7.1179 -1.1655 39 1 3.1610 7.9286 0.4087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280785338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:28 Heat of formation + Delta-G solvation = -127.548018 kcal Electronic energy + Delta-G solvation = -28720.487732 eV Core-core repulsion = 24249.495458 eV Total energy + Delta-G solvation = -4470.992274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.28066 -48.79974 -48.77790 -42.70875 -40.33468 -36.93858 -35.72406 -34.75562 -32.73100 -31.81064 -30.60839 -28.99127 -27.82545 -25.23525 -24.96437 -24.05699 -22.81493 -21.82938 -20.42931 -19.67266 -19.35640 -18.77860 -18.53124 -17.95803 -17.48045 -16.86795 -16.54888 -16.24697 -15.92979 -15.64882 -15.57122 -15.18535 -15.07949 -14.93123 -14.89994 -14.77122 -14.65601 -14.37888 -14.10470 -13.64292 -13.54723 -13.40306 -13.10511 -13.09069 -13.01282 -12.70506 -12.59038 -12.55367 -12.12174 -12.03158 -11.78173 -11.66591 -10.94197 -10.84423 -10.58935 -9.84437 -9.43970 -8.18104 -6.34590 0.38993 0.68709 0.85258 1.44270 1.50802 1.57569 1.63244 1.94643 2.31342 2.43235 2.56612 2.83096 3.09920 3.23213 3.54542 3.81905 3.95200 4.04423 4.23755 4.32070 4.33225 4.40721 4.47625 4.58519 4.68354 4.84087 4.84804 4.93008 4.99860 5.09201 5.21272 5.22723 5.35676 5.68006 5.75156 5.87826 6.07395 6.10224 6.55160 6.82285 7.27950 7.40260 8.86339 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.006600 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.416731 B = 4241.710410 C = 5981.749903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.109 3.891 3 N -0.591 5.591 4 C 0.251 3.749 5 C -0.547 4.547 6 H 0.060 0.940 7 C 0.035 3.965 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.283 1.283 11 H -0.277 1.277 12 H -0.263 1.263 13 C 0.588 3.412 14 O -0.585 6.585 15 C -0.270 4.270 16 C 0.137 3.863 17 N -0.335 5.335 18 C 0.112 3.888 19 C -0.160 4.160 20 N -0.254 5.254 21 C 0.005 3.995 22 C 0.562 3.438 23 F -0.166 7.166 24 F -0.165 7.165 25 F -0.166 7.166 26 H 0.090 0.910 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.025 0.975 33 H 0.269 0.731 34 H 0.214 0.786 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.045 0.955 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 5.441 4.453 7.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.014 4.014 3 N -0.321 5.321 4 C 0.130 3.870 5 C -0.586 4.586 6 H 0.078 0.922 7 C -0.167 4.167 8 N -0.547 5.547 9 Si 0.772 3.228 10 H -0.209 1.209 11 H -0.202 1.202 12 H -0.188 1.188 13 C 0.376 3.624 14 O -0.467 6.467 15 C -0.285 4.285 16 C -0.013 4.013 17 N -0.116 5.116 18 C -0.006 4.006 19 C -0.217 4.217 20 N -0.078 5.078 21 C -0.162 4.162 22 C 0.505 3.495 23 F -0.148 7.148 24 F -0.146 7.146 25 F -0.147 7.147 26 H 0.109 0.891 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.079 0.921 34 H 0.231 0.769 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.064 0.936 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.559 6.587 5.017 8.425 hybrid contribution 0.360 -1.054 -0.752 1.344 sum 1.919 5.533 4.264 7.244 Atomic orbital electron populations 1.22030 0.94960 1.03072 1.01131 1.21452 0.94978 0.82110 1.02813 1.48119 1.62385 1.14491 1.07057 1.19160 0.96454 0.91896 0.79492 1.21623 0.98538 1.31401 1.07003 0.92221 1.25555 1.00601 0.94331 0.96229 1.70030 1.36569 1.31799 1.16252 0.85719 0.80346 0.77866 0.78826 1.20883 1.20248 1.18750 1.17347 0.76306 0.85299 0.83415 1.90668 1.56631 1.66379 1.33049 1.19963 1.08246 0.95455 1.04857 1.24121 0.97030 0.83897 0.96271 1.49006 1.29772 1.08018 1.24781 1.22447 0.91385 0.87708 0.99072 1.22036 1.00667 0.97375 1.01652 1.76836 1.05687 1.20122 1.05119 1.21976 1.01192 0.93468 0.99580 1.16716 0.79300 0.74065 0.79401 1.93217 1.82605 1.92662 1.46285 1.93211 1.78350 1.47209 1.95871 1.93231 1.71289 1.58962 1.91263 0.89142 0.94054 0.93032 0.89930 0.90790 0.96256 0.95697 0.92127 0.76944 0.86429 0.86007 0.87189 0.93611 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 10.24 71.98 0.74 -4.15 16 2 C 0.11 3.99 6.21 86.38 0.54 4.53 16 3 N -0.59 -25.26 2.46 -830.05 -2.04 -27.30 16 4 C 0.25 11.46 4.74 85.63 0.41 11.87 16 5 C -0.55 -25.35 6.88 25.60 0.18 -25.17 16 6 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.04 1.62 5.46 84.66 0.46 2.08 16 8 N -0.91 -44.69 13.29 21.45 0.28 -44.41 16 9 Si 0.95 36.37 29.54 68.60 2.03 38.40 16 10 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -10.32 7.11 99.48 0.71 -9.61 16 12 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 13 C 0.59 26.23 6.43 86.66 0.56 26.79 16 14 O -0.58 -28.05 15.82 -4.04 -0.06 -28.12 16 15 C -0.27 -11.23 4.98 -20.15 -0.10 -11.33 16 16 C 0.14 5.12 9.30 84.28 0.78 5.90 16 17 N -0.34 -10.78 3.65 -346.30 -1.26 -12.04 16 18 C 0.11 2.42 7.21 86.38 0.62 3.05 16 19 C -0.16 -3.24 10.09 71.98 0.73 -2.51 16 20 N -0.25 -9.06 12.27 -46.67 -0.57 -9.64 16 21 C 0.01 0.20 6.60 43.52 0.29 0.48 16 22 C 0.56 20.87 3.46 71.24 0.25 21.11 16 23 F -0.17 -6.11 17.30 44.97 0.78 -5.33 16 24 F -0.17 -5.59 17.25 44.97 0.78 -4.81 16 25 F -0.17 -6.54 15.38 44.97 0.69 -5.85 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.08 2.89 8.11 -2.39 -0.02 2.88 16 30 H 0.07 2.74 7.23 -2.39 -0.02 2.72 16 31 H 0.02 0.94 8.07 -2.38 -0.02 0.93 16 32 H 0.03 1.22 5.91 -2.39 -0.01 1.20 16 33 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 34 H 0.21 8.15 5.51 -2.91 -0.02 8.14 16 35 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.12 2.32 8.06 -2.39 -0.02 2.30 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -58.82 345.87 7.15 -51.67 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.09 Total: 14.79 kcal Atomic # 6 Polarization: 27.20 SS G_CDS: 5.44 Total: 32.64 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -3.59 Total: -93.38 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.06 Total: -28.12 kcal Atomic # 9 Polarization: -18.24 SS G_CDS: 2.25 Total: -16.00 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -58.82 7.15 -51.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280785338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.874 kcal (2) G-P(sol) polarization free energy of solvation -58.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds