Wall clock time and date at job start Tue Mar 31 2020 12:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99543 * 2 1 4 4 N 1.46907 * 109.46984 * 124.11270 * 3 2 1 5 5 C 1.46899 * 110.99498 * 291.85157 * 4 3 2 6 6 C 1.50698 * 109.47407 * 297.77484 * 5 4 3 7 7 H 1.07996 * 120.00090 * 4.83324 * 6 5 4 8 8 C 1.37880 * 120.00247 * 184.83200 * 6 5 4 9 9 N 1.31516 * 119.99900 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47339 * 60.00244 * 10 8 6 12 12 H 1.48509 * 109.47252 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47343 * 300.00149 * 10 8 6 14 14 C 1.46897 * 110.99980 * 55.80319 * 4 3 2 15 15 C 1.50695 * 109.46918 * 66.05230 * 14 4 3 16 16 O 1.21286 * 120.00266 * 359.97438 * 15 14 4 17 17 N 1.34780 * 119.99965 * 180.02562 * 15 14 4 18 18 C 1.39927 * 119.99813 * 185.10595 * 17 15 14 19 19 C 1.38888 * 120.07179 * 34.86055 * 18 17 15 20 20 C 1.38093 * 119.92696 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.07350 * 359.74244 * 20 19 18 22 22 C 1.38262 * 120.13869 * 0.50877 * 21 20 19 23 23 C 1.38134 * 120.07076 * 359.49213 * 22 21 20 24 24 N 1.48015 * 120.03454 * 180.27001 * 23 22 21 25 25 O 1.21801 * 120.00257 * 355.18532 * 24 23 22 26 26 O 1.21801 * 119.99732 * 175.18236 * 24 23 22 27 27 H 1.07999 * 120.00490 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99524 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00049 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47619 * 4.11385 * 3 2 1 31 31 H 1.08999 * 109.47348 * 244.10662 * 3 2 1 32 32 H 1.09002 * 109.47317 * 57.77686 * 5 4 3 33 33 H 1.09003 * 109.46917 * 177.77540 * 5 4 3 34 34 H 0.96999 * 120.00256 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.47169 * 306.04842 * 14 4 3 36 36 H 1.08999 * 109.46731 * 186.05046 * 14 4 3 37 37 H 0.96997 * 119.99883 * 5.10158 * 17 15 14 38 38 H 1.08003 * 120.03500 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.96515 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.93490 * 180.28360 * 21 20 19 41 41 H 1.07997 * 119.96743 * 179.76704 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9810 1.3409 1.1467 5 6 2.2390 1.4161 2.4123 6 6 1.4395 2.6929 2.4509 7 1 1.4166 3.3420 1.5881 8 6 0.7373 3.0326 3.5878 9 7 0.7655 2.2424 4.6388 10 14 -0.2531 4.6156 3.6359 11 1 -1.2877 4.5849 2.5711 12 1 -0.9099 4.7486 4.9612 13 1 0.6513 5.7723 3.4140 14 6 3.8846 0.1828 1.1342 15 6 4.7996 0.2725 -0.0598 16 8 4.7076 1.2088 -0.8253 17 7 5.7194 -0.6882 -0.2776 18 6 6.6390 -0.5521 -1.3234 19 6 7.1285 0.7032 -1.6607 20 6 8.0356 0.8342 -2.6937 21 6 8.4607 -0.2835 -3.3886 22 6 7.9714 -1.5338 -3.0586 23 6 7.0638 -1.6716 -2.0264 24 7 6.5451 -3.0112 -1.6700 25 8 6.8496 -3.9808 -2.3414 26 8 5.8137 -3.1441 -0.7051 27 1 -0.5401 0.9352 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3574 2.1323 0.0737 31 1 2.6338 1.3955 -0.9245 32 1 1.5650 0.5629 2.4896 33 1 2.9407 1.4014 3.2463 34 1 0.2718 2.4815 5.4388 35 1 3.2988 -0.7345 1.0751 36 1 4.4790 0.1760 2.0478 37 1 5.7439 -1.4739 0.2906 38 1 6.7994 1.5759 -1.1163 39 1 8.4163 1.8100 -2.9568 40 1 9.1737 -0.1790 -4.1931 41 1 8.3024 -2.4042 -3.6056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292256493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:51 Heat of formation + Delta-G solvation = 34.176396 kcal Electronic energy + Delta-G solvation = -26597.410661 eV Core-core repulsion = 22675.288024 eV Total energy + Delta-G solvation = -3922.122637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50118 -40.70696 -39.06517 -37.09236 -36.73279 -34.94373 -32.86657 -32.23564 -32.19127 -30.64952 -28.25296 -26.76790 -26.38113 -24.45394 -23.45361 -22.73475 -21.11420 -20.61237 -19.46634 -19.09334 -18.84085 -17.84285 -17.74723 -17.08502 -16.22250 -15.90962 -15.71004 -15.39863 -14.77871 -14.57205 -14.42030 -14.28480 -13.77648 -13.62317 -13.41683 -12.89800 -12.45464 -12.25082 -12.19042 -11.77795 -11.56732 -11.38519 -11.36765 -11.32155 -10.99970 -10.81840 -10.79556 -10.59247 -10.57522 -10.06958 -9.93461 -9.77111 -9.18410 -8.81106 -8.68848 -8.46002 -7.33537 -6.05253 -4.05767 -0.39903 0.61782 1.09641 1.17519 2.49327 2.65125 2.84846 3.07488 3.32665 3.36713 3.39896 3.98598 4.27573 4.38710 4.47022 4.53485 4.68388 4.89683 4.96696 5.21435 5.32077 5.43044 5.47619 5.51265 5.53204 5.68198 5.74364 5.85202 5.88336 6.09848 6.22899 6.32511 6.40139 6.74321 7.05289 7.14059 7.20011 7.24810 7.38668 7.42942 7.71999 7.94622 8.05643 8.13868 8.46178 8.99873 9.57684 11.05913 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.003062 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.355935 B = 9141.544158 C = 9725.022008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.189 4.189 3 C 0.080 3.920 4 N -0.511 5.511 5 C 0.193 3.807 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.033 3.967 15 C 0.519 3.481 16 O -0.492 6.492 17 N -0.678 5.678 18 C 0.237 3.763 19 C -0.129 4.129 20 C -0.043 4.043 21 C -0.143 4.143 22 C -0.039 4.039 23 C -0.086 4.086 24 N 0.042 4.958 25 O -0.158 6.158 26 O -0.180 6.180 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.078 0.922 32 H -0.003 1.003 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.426 0.574 38 H 0.160 0.840 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.433 -7.255 -14.221 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.208 4.208 3 C -0.048 4.048 4 N -0.234 5.234 5 C 0.069 3.931 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.098 4.098 15 C 0.308 3.692 16 O -0.363 6.363 17 N -0.330 5.330 18 C 0.137 3.863 19 C -0.150 4.150 20 C -0.062 4.062 21 C -0.162 4.162 22 C -0.058 4.058 23 C -0.173 4.173 24 N 0.557 4.443 25 O -0.375 6.375 26 O -0.387 6.387 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.015 0.985 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.269 0.731 38 H 0.178 0.822 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 15.702 -5.506 -14.610 22.143 hybrid contribution -1.193 -0.847 0.655 1.603 sum 14.509 -6.353 -13.955 21.109 Atomic orbital electron populations 1.23741 0.96002 1.01251 1.00367 1.23633 0.96890 0.99831 1.00494 1.21480 0.94695 0.94321 0.94306 1.62255 1.20257 1.35320 1.05566 1.19792 0.92189 0.96942 0.84216 1.21052 1.27997 1.05749 0.99608 0.91881 1.24944 0.96867 0.97101 0.95479 1.69937 1.42606 1.37344 1.03829 0.86573 0.80190 0.83694 0.77040 1.20270 1.21372 1.20162 1.21999 0.96043 0.96782 0.94983 1.21504 0.79728 0.80638 0.87306 1.90667 1.68136 1.31646 1.45855 1.44525 1.31192 1.26328 1.30998 1.17610 0.88575 0.92131 0.87979 1.21410 0.97296 0.96337 0.99953 1.21550 0.92730 0.99805 0.92156 1.21158 1.02225 0.90841 1.02020 1.20894 0.92381 1.00051 0.92495 1.21004 1.09705 0.81659 1.04934 1.43463 0.98654 1.02782 0.99450 1.94527 1.62169 1.30179 1.50627 1.94381 1.33662 1.91504 1.19176 0.88261 0.89634 0.88839 0.89123 0.90382 0.98522 0.94863 0.92853 0.91465 0.87670 0.73062 0.82229 0.83629 0.83594 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 14.32 29.01 0.42 -2.68 16 2 C -0.19 -3.45 7.74 -36.03 -0.28 -3.73 16 3 C 0.08 1.59 5.25 -4.97 -0.03 1.57 16 4 N -0.51 -10.71 4.47 -238.96 -1.07 -11.78 16 5 C 0.19 4.81 4.57 -4.98 -0.02 4.79 16 6 C -0.51 -13.82 8.49 -34.44 -0.29 -14.11 16 7 H 0.06 1.72 6.69 -52.49 -0.35 1.37 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 10 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.03 0.56 5.20 -4.98 -0.03 0.53 16 15 C 0.52 8.01 7.31 -10.99 -0.08 7.93 16 16 O -0.49 -8.74 12.09 5.55 0.07 -8.68 16 17 N -0.68 -8.63 4.69 -9.86 -0.05 -8.68 16 18 C 0.24 2.82 6.24 -83.69 -0.52 2.30 16 19 C -0.13 -1.36 8.65 -39.39 -0.34 -1.70 16 20 C -0.04 -0.31 10.04 -39.61 -0.40 -0.71 16 21 C -0.14 -0.89 10.04 -39.55 -0.40 -1.29 16 22 C -0.04 -0.32 9.55 -39.61 -0.38 -0.70 16 23 C -0.09 -0.96 6.86 -79.76 -0.55 -1.51 16 24 N 0.04 0.54 4.45 34.05 0.15 0.69 16 25 O -0.16 -2.08 18.46 -29.46 -0.54 -2.63 16 26 O -0.18 -2.46 15.95 -29.46 -0.47 -2.93 16 27 H 0.10 1.80 7.84 -52.49 -0.41 1.39 16 28 H 0.09 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.09 1.59 6.59 -52.49 -0.35 1.24 16 30 H 0.09 1.98 5.95 -51.93 -0.31 1.67 16 31 H 0.08 1.54 5.96 -51.93 -0.31 1.23 16 32 H 0.00 -0.08 7.29 -51.93 -0.38 -0.46 16 33 H 0.03 0.88 8.01 -51.93 -0.42 0.47 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.07 1.06 5.99 -51.93 -0.31 0.75 16 36 H 0.11 1.61 7.98 -51.93 -0.41 1.19 16 37 H 0.43 4.91 6.25 -40.82 -0.26 4.65 16 38 H 0.16 1.89 6.53 -52.48 -0.34 1.55 16 39 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.15 0.98 7.62 -52.49 -0.40 0.58 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -31.89 349.19 -8.57 -40.46 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.65 Total: 5.05 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.99 Total: -7.81 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.23 Total: -45.12 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.95 Total: -14.24 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.89 -8.57 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.641 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds