Wall clock time and date at job start Tue Mar 31 2020 12:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99543 * 2 1 4 4 N 1.46907 * 109.46984 * 124.11270 * 3 2 1 5 5 C 1.46899 * 110.99498 * 291.85157 * 4 3 2 6 6 C 1.50698 * 109.47407 * 297.77484 * 5 4 3 7 7 H 1.07996 * 120.00090 * 4.83324 * 6 5 4 8 8 C 1.37880 * 120.00247 * 184.83200 * 6 5 4 9 9 N 1.31516 * 119.99900 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47339 * 60.00244 * 10 8 6 12 12 H 1.48509 * 109.47252 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47343 * 300.00149 * 10 8 6 14 14 C 1.46897 * 110.99980 * 55.80319 * 4 3 2 15 15 C 1.50695 * 109.46918 * 66.05230 * 14 4 3 16 16 O 1.21286 * 120.00266 * 359.97438 * 15 14 4 17 17 N 1.34780 * 119.99965 * 180.02562 * 15 14 4 18 18 C 1.39927 * 119.99813 * 185.10595 * 17 15 14 19 19 C 1.38888 * 120.07179 * 34.86055 * 18 17 15 20 20 C 1.38093 * 119.92696 * 180.02562 * 19 18 17 21 21 C 1.38298 * 120.07350 * 359.74244 * 20 19 18 22 22 C 1.38262 * 120.13869 * 0.50877 * 21 20 19 23 23 C 1.38134 * 120.07076 * 359.49213 * 22 21 20 24 24 N 1.48015 * 120.03454 * 180.27001 * 23 22 21 25 25 O 1.21801 * 120.00257 * 355.18532 * 24 23 22 26 26 O 1.21801 * 119.99732 * 175.18236 * 24 23 22 27 27 H 1.07999 * 120.00490 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99524 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00049 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47619 * 4.11385 * 3 2 1 31 31 H 1.08999 * 109.47348 * 244.10662 * 3 2 1 32 32 H 1.09002 * 109.47317 * 57.77686 * 5 4 3 33 33 H 1.09003 * 109.46917 * 177.77540 * 5 4 3 34 34 H 0.96999 * 120.00256 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.47169 * 306.04842 * 14 4 3 36 36 H 1.08999 * 109.46731 * 186.05046 * 14 4 3 37 37 H 0.96997 * 119.99883 * 5.10158 * 17 15 14 38 38 H 1.08003 * 120.03500 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.96515 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.93490 * 180.28360 * 21 20 19 41 41 H 1.07997 * 119.96743 * 179.76704 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9810 1.3409 1.1467 5 6 2.2390 1.4161 2.4123 6 6 1.4395 2.6929 2.4509 7 1 1.4166 3.3420 1.5881 8 6 0.7373 3.0326 3.5878 9 7 0.7655 2.2424 4.6388 10 14 -0.2531 4.6156 3.6359 11 1 -1.2877 4.5849 2.5711 12 1 -0.9099 4.7486 4.9612 13 1 0.6513 5.7723 3.4140 14 6 3.8846 0.1828 1.1342 15 6 4.7996 0.2725 -0.0598 16 8 4.7076 1.2088 -0.8253 17 7 5.7194 -0.6882 -0.2776 18 6 6.6390 -0.5521 -1.3234 19 6 7.1285 0.7032 -1.6607 20 6 8.0356 0.8342 -2.6937 21 6 8.4607 -0.2835 -3.3886 22 6 7.9714 -1.5338 -3.0586 23 6 7.0638 -1.6716 -2.0264 24 7 6.5451 -3.0112 -1.6700 25 8 6.8496 -3.9808 -2.3414 26 8 5.8137 -3.1441 -0.7051 27 1 -0.5401 0.9352 0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 -0.0004 30 1 1.3574 2.1323 0.0737 31 1 2.6338 1.3955 -0.9245 32 1 1.5650 0.5629 2.4896 33 1 2.9407 1.4014 3.2463 34 1 0.2718 2.4815 5.4388 35 1 3.2988 -0.7345 1.0751 36 1 4.4790 0.1760 2.0478 37 1 5.7439 -1.4739 0.2906 38 1 6.7994 1.5759 -1.1163 39 1 8.4163 1.8100 -2.9568 40 1 9.1737 -0.1790 -4.1931 41 1 8.3024 -2.4042 -3.6056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292256493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:50 Heat of formation + Delta-G solvation = 14.217747 kcal Electronic energy + Delta-G solvation = -26598.276133 eV Core-core repulsion = 22675.288024 eV Total energy + Delta-G solvation = -3922.988109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.43506 -41.76977 -40.05757 -38.49439 -37.82086 -35.97530 -34.84740 -33.77979 -32.99608 -31.61818 -29.84711 -28.25285 -27.43937 -26.12950 -24.46099 -23.62131 -22.74249 -21.82237 -20.59004 -20.26733 -19.83170 -18.76365 -18.66570 -18.45414 -18.12450 -17.20575 -16.72193 -16.42537 -16.25735 -15.94586 -15.68815 -15.56317 -15.10256 -14.94896 -14.33147 -14.24612 -13.94855 -13.54029 -13.24550 -12.95652 -12.88501 -12.77735 -12.75556 -12.66572 -12.40623 -12.36062 -12.29092 -12.19079 -11.95425 -11.70133 -11.45670 -10.96804 -10.62174 -10.58414 -10.21418 -9.61796 -9.02146 -8.18563 -6.26120 -1.27377 -0.09774 0.24921 0.31202 1.31360 1.41155 1.42596 1.44094 1.51471 1.63193 2.34331 2.41875 3.14357 3.21444 3.32975 3.51562 3.65415 3.94122 3.96280 4.00264 4.08900 4.11801 4.31430 4.42855 4.51205 4.59661 4.71522 4.93578 4.95383 5.03131 5.10080 5.16037 5.18505 5.20321 5.32089 5.55668 5.62641 5.67137 5.84651 5.97917 6.09381 6.29988 6.42283 6.54963 6.85139 6.89633 7.41890 8.92483 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.003062 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.355935 B = 9141.544158 C = 9725.022008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.200 4.200 3 C 0.087 3.913 4 N -0.522 5.522 5 C 0.211 3.789 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.031 3.969 15 C 0.529 3.471 16 O -0.520 6.520 17 N -0.669 5.669 18 C 0.208 3.792 19 C -0.145 4.145 20 C -0.029 4.029 21 C -0.120 4.120 22 C -0.037 4.037 23 C -0.098 4.098 24 N 0.042 4.958 25 O -0.159 6.159 26 O -0.211 6.211 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.081 0.919 32 H -0.023 1.023 33 H 0.011 0.989 34 H 0.264 0.736 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.429 0.571 38 H 0.142 0.858 39 H 0.180 0.820 40 H 0.192 0.808 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.007 -6.999 -16.429 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.219 4.219 3 C -0.040 4.040 4 N -0.245 5.245 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.190 4.190 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.100 4.100 15 C 0.318 3.682 16 O -0.394 6.394 17 N -0.322 5.322 18 C 0.109 3.891 19 C -0.166 4.166 20 C -0.047 4.047 21 C -0.139 4.139 22 C -0.056 4.056 23 C -0.185 4.185 24 N 0.552 4.448 25 O -0.378 6.378 26 O -0.413 6.413 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.099 0.901 32 H -0.005 1.005 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.133 0.867 37 H 0.274 0.726 38 H 0.159 0.841 39 H 0.197 0.803 40 H 0.209 0.791 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 17.283 -5.281 -16.808 24.680 hybrid contribution -1.513 -0.943 1.196 2.147 sum 15.770 -6.224 -15.612 23.047 Atomic orbital electron populations 1.23915 0.95893 1.02050 0.99114 1.23616 0.97226 0.99502 1.01590 1.21315 0.94270 0.94538 0.93893 1.62074 1.20330 1.37965 1.04132 1.19393 0.91271 0.95329 0.85462 1.21350 1.28377 1.06528 0.99531 0.92376 1.25759 0.97880 1.00310 0.95089 1.70051 1.43529 1.39094 1.04378 0.85560 0.78814 0.79718 0.77284 1.19439 1.20834 1.19621 1.22034 0.95859 0.95574 0.96522 1.21020 0.79901 0.80809 0.86496 1.90649 1.69161 1.32893 1.46698 1.44216 1.30947 1.25515 1.31541 1.17809 0.89538 0.93148 0.88565 1.21438 0.98726 0.95123 1.01354 1.21992 0.90669 1.01919 0.90167 1.21692 1.01248 0.89206 1.01754 1.21353 0.91121 1.01891 0.91245 1.21227 1.10879 0.80160 1.06238 1.43757 0.98401 1.03482 0.99149 1.94495 1.61935 1.30977 1.50393 1.94373 1.34938 1.91910 1.20031 0.89193 0.87115 0.87362 0.91497 0.90100 1.00487 0.97054 0.92731 0.90388 0.86689 0.72639 0.84070 0.80288 0.79103 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.02 14.32 67.77 0.97 -5.05 16 2 C -0.20 -7.35 7.74 25.64 0.20 -7.15 16 3 C 0.09 3.59 5.25 85.56 0.45 4.04 16 4 N -0.52 -22.59 4.47 -909.94 -4.07 -26.66 16 5 C 0.21 10.90 4.57 85.56 0.39 11.29 16 6 C -0.52 -29.10 8.49 25.60 0.22 -28.88 16 7 H 0.06 3.25 6.69 -2.91 -0.02 3.23 16 8 C 0.01 0.45 5.46 84.66 0.46 0.91 16 9 N -0.93 -54.99 13.29 21.45 0.28 -54.70 16 10 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.03 1.07 5.20 85.56 0.45 1.51 16 15 C 0.53 16.71 7.31 87.65 0.64 17.35 16 16 O -0.52 -18.92 12.09 -3.05 -0.04 -18.96 16 17 N -0.67 -17.42 4.69 -303.51 -1.42 -18.84 16 18 C 0.21 4.87 6.24 38.15 0.24 5.10 16 19 C -0.15 -2.91 8.65 22.39 0.19 -2.72 16 20 C -0.03 -0.31 10.04 22.25 0.22 -0.09 16 21 C -0.12 -0.93 10.04 22.29 0.22 -0.70 16 22 C -0.04 -0.48 9.55 22.25 0.21 -0.27 16 23 C -0.10 -2.07 6.86 36.50 0.25 -1.82 16 24 N 0.04 1.06 4.45 -46.17 -0.21 0.86 16 25 O -0.16 -4.05 18.46 18.88 0.35 -3.70 16 26 O -0.21 -5.91 15.95 18.89 0.30 -5.61 16 27 H 0.09 3.30 7.84 -2.91 -0.02 3.28 16 28 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.11 3.64 6.59 -2.91 -0.02 3.62 16 30 H 0.07 3.03 5.95 -2.39 -0.01 3.01 16 31 H 0.08 3.27 5.96 -2.39 -0.01 3.26 16 32 H -0.02 -1.23 7.29 -2.39 -0.02 -1.25 16 33 H 0.01 0.63 8.01 -2.39 -0.02 0.61 16 34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.08 2.51 5.99 -2.39 -0.01 2.49 16 36 H 0.12 3.64 7.98 -2.39 -0.02 3.62 16 37 H 0.43 10.27 6.25 -92.71 -0.58 9.69 16 38 H 0.14 3.38 6.53 -2.91 -0.02 3.36 16 39 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 40 H 0.19 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.18 1.56 7.62 -2.91 -0.02 1.53 16 Total: -1.00 -71.11 349.19 2.84 -68.27 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.50 Total: 19.57 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.12 Total: -6.47 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -5.41 Total: -99.35 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: 0.61 Total: -28.27 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.11 2.84 -68.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292256493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.489 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds