Wall clock time and date at job start Tue Mar 31 2020 12:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 N 1.46497 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00277 * 270.00003 * 4 3 2 6 6 H 1.08000 * 119.99967 * 140.69345 * 5 4 3 7 7 C 1.38951 * 120.00237 * 320.70153 * 5 4 3 8 8 N 1.31408 * 120.00488 * 159.03397 * 7 5 4 9 9 Si 1.86807 * 119.99561 * 339.03340 * 7 5 4 10 10 H 1.48499 * 109.46979 * 95.81944 * 9 7 5 11 11 H 1.48506 * 109.46875 * 215.81816 * 9 7 5 12 12 H 1.48493 * 109.47393 * 335.81847 * 9 7 5 13 13 C 1.34781 * 119.99662 * 90.00470 * 4 3 2 14 14 O 1.21284 * 119.99990 * 5.01041 * 13 4 3 15 15 C 1.50700 * 119.99667 * 185.01131 * 13 4 3 16 16 C 1.52999 * 109.47043 * 185.43116 * 15 13 4 17 17 C 1.50700 * 109.46983 * 179.21965 * 16 15 13 18 18 N 1.30924 * 126.40711 * 90.00073 * 17 16 15 19 19 C 1.35391 * 105.57981 * 179.97438 * 18 17 16 20 20 C 1.47726 * 126.45093 * 179.97438 * 19 18 17 21 21 C 1.35990 * 125.93842 * 180.02562 * 20 19 18 22 22 C 1.40828 * 106.73718 * 179.73112 * 21 20 19 23 23 C 1.34810 * 107.03768 * 0.37813 * 22 21 20 24 24 O 1.34190 * 108.68418 * 359.61589 * 23 22 21 25 25 N 1.31044 * 107.10232 * 0.24009 * 19 18 17 26 26 O 1.21292 * 110.03906 * 359.57533 * 25 19 18 27 27 H 1.09001 * 109.46900 * 299.99719 * 1 2 3 28 28 H 1.08993 * 109.47549 * 59.99540 * 1 2 3 29 29 H 1.09006 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46900 * 240.00281 * 2 1 3 31 31 H 1.09001 * 109.47243 * 120.00415 * 2 1 3 32 32 H 1.09007 * 109.46566 * 60.00490 * 3 2 1 33 33 H 1.08993 * 109.47226 * 300.00657 * 3 2 1 34 34 H 0.96996 * 120.00597 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47296 * 65.42724 * 15 13 4 36 36 H 1.09001 * 109.47478 * 305.43425 * 15 13 4 37 37 H 1.08994 * 109.47011 * 59.21729 * 16 15 13 38 38 H 1.08999 * 109.46735 * 299.21531 * 16 15 13 39 39 H 1.07998 * 126.63076 * 359.96723 * 21 20 19 40 40 H 1.07998 * 126.47667 * 180.25681 * 22 21 20 41 41 H 1.08003 * 125.65538 * 179.88619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.0878 0.8498 1.2916 7 6 3.7325 2.2043 2.2540 8 7 4.1089 1.9129 3.4789 9 14 2.5810 3.6430 1.9481 10 1 1.1761 3.2023 2.1413 11 1 2.8921 4.7376 2.9022 12 1 2.7593 4.1329 0.5576 13 6 4.1783 1.4427 -1.1682 14 8 3.5749 1.5347 -2.2162 15 6 5.6810 1.3287 -1.1713 16 6 6.2016 1.4892 -2.6010 17 6 7.7056 1.3943 -2.6015 18 7 8.4154 0.3032 -2.7428 19 6 9.7084 0.6997 -2.6794 20 6 10.8988 -0.1684 -2.7863 21 6 12.1939 0.2413 -2.7206 22 6 12.9914 -0.9107 -2.8626 23 6 12.1529 -1.9553 -3.0149 24 8 10.8902 -1.5038 -2.9650 25 7 9.7050 1.9977 -2.4995 26 8 8.5646 2.4087 -2.4586 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.7885 2.4446 4.2242 35 1 5.9721 0.3515 -0.7862 36 1 6.1060 2.1092 -0.5401 37 1 5.8987 2.4608 -2.9911 38 1 5.7876 0.7004 -3.2291 39 1 12.5432 1.2538 -2.5822 40 1 14.0706 -0.9496 -2.8533 41 1 12.4484 -2.9853 -3.1498 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299136085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:53 Heat of formation + Delta-G solvation = 52.094888 kcal Electronic energy + Delta-G solvation = -25867.433121 eV Core-core repulsion = 21946.087489 eV Total energy + Delta-G solvation = -3921.345633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.57961 -42.82367 -39.07353 -36.07787 -35.57785 -34.32804 -33.33863 -33.01604 -31.75044 -31.13629 -29.65869 -26.67518 -25.33793 -24.67649 -24.18519 -22.66806 -21.71957 -21.17260 -20.57687 -19.09436 -18.44803 -18.14686 -17.03109 -16.91150 -16.31539 -16.27798 -15.54432 -15.45037 -14.87019 -14.54619 -14.16707 -13.74442 -13.44698 -13.20488 -13.16099 -13.07809 -12.83113 -12.59717 -12.49333 -12.17990 -12.10581 -11.89249 -11.58298 -11.53613 -11.14597 -11.00624 -10.87060 -10.74476 -10.49144 -10.38334 -10.18922 -10.08128 -9.82218 -9.25981 -8.72581 -8.65262 -7.86408 -6.56054 -4.18310 0.64537 1.38350 2.08001 2.26262 2.69629 2.77800 3.00301 3.17317 3.25287 3.47141 3.60233 4.05865 4.11871 4.31034 4.64073 4.69292 4.77954 4.89252 5.22088 5.32937 5.37960 5.47947 5.52356 5.54675 5.59762 5.64446 5.79196 5.86321 5.90141 5.98990 6.09531 6.10425 6.23547 6.31762 6.34651 6.40327 6.41410 6.71640 6.72462 6.86969 7.30943 7.99263 8.04384 8.15109 8.84934 9.23938 9.57785 10.54189 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.002786 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.971069 B =10049.467341 C =10448.582566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.461 5.461 5 C -0.351 4.351 6 H 0.104 0.896 7 C 0.071 3.929 8 N -0.856 5.856 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.260 1.260 13 C 0.485 3.515 14 O -0.599 6.599 15 C -0.118 4.118 16 C -0.015 4.015 17 C 0.211 3.789 18 N -0.471 5.471 19 C 0.237 3.763 20 C 0.056 3.944 21 C -0.151 4.151 22 C -0.218 4.218 23 C -0.014 4.014 24 O -0.153 6.153 25 N -0.363 5.363 26 O 0.089 5.911 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.276 0.724 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.986 -3.648 -9.738 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.180 5.180 5 C -0.478 4.478 6 H 0.122 0.878 7 C -0.137 4.137 8 N -0.491 5.491 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.184 1.184 13 C 0.274 3.726 14 O -0.485 6.485 15 C -0.159 4.159 16 C -0.055 4.055 17 C -0.009 4.009 18 N -0.204 5.204 19 C -0.032 4.032 20 C 0.004 3.996 21 C -0.174 4.174 22 C -0.237 4.237 23 C -0.084 4.084 24 O -0.047 6.047 25 N -0.071 5.071 26 O 0.027 5.973 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 10.197 -3.703 -10.016 14.765 hybrid contribution -0.401 0.752 0.377 0.931 sum 9.796 -2.952 -9.639 14.057 Atomic orbital electron populations 1.21709 0.96327 1.01117 1.01400 1.21767 0.94840 0.97861 1.02513 1.21648 0.82456 0.96731 1.01214 1.43697 1.04037 1.64630 1.05670 1.19059 1.12073 1.29024 0.87664 0.87839 1.25338 0.96759 0.96998 0.94646 1.69756 1.43385 1.37507 0.98405 0.86944 0.80533 0.82830 0.79418 1.20041 1.21417 1.18366 1.20059 0.88787 0.80006 0.83743 1.90556 1.70414 1.55755 1.31809 1.21366 0.94978 1.05289 0.94308 1.20192 0.77890 1.07024 1.00347 1.29071 0.98276 0.80537 0.93054 1.72198 1.00276 1.26971 1.20944 1.22175 0.90042 0.88118 1.02828 1.18035 0.90185 0.80894 1.10484 1.21837 0.90502 1.00965 1.04051 1.21808 1.01236 0.91831 1.08790 1.24348 0.79919 1.00427 1.03725 1.84127 1.30315 1.20610 1.69601 1.74979 0.99696 1.11624 1.20785 1.85325 1.10519 1.36646 1.64836 0.93000 0.92996 0.92988 0.92113 0.91180 0.91814 0.91148 0.91366 0.88889 0.88139 0.87209 0.86416 0.82409 0.82483 0.77115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.13 -2.45 6.26 -26.73 -0.17 -2.61 16 3 C 0.10 2.17 4.24 -4.04 -0.02 2.15 16 4 N -0.46 -10.47 2.14 -114.81 -0.25 -10.72 16 5 C -0.35 -8.68 8.93 -14.93 -0.13 -8.81 16 6 H 0.10 2.67 7.44 -52.49 -0.39 2.28 16 7 C 0.07 1.80 5.32 -17.47 -0.09 1.70 16 8 N -0.86 -22.90 13.96 55.50 0.77 -22.12 16 9 Si 0.88 19.80 25.02 -169.99 -4.25 15.55 16 10 H -0.27 -5.96 6.71 56.52 0.38 -5.58 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 13 C 0.48 10.26 7.62 -10.98 -0.08 10.18 16 14 O -0.60 -13.44 15.54 5.55 0.09 -13.35 16 15 C -0.12 -2.07 4.33 -27.88 -0.12 -2.19 16 16 C -0.02 -0.22 5.14 -27.88 -0.14 -0.36 16 17 C 0.21 3.19 7.74 -12.97 -0.10 3.09 16 18 N -0.47 -7.84 11.58 -9.88 -0.11 -7.95 16 19 C 0.24 3.80 8.06 -156.04 -1.26 2.55 16 20 C 0.06 0.79 7.26 -36.51 -0.26 0.52 16 21 C -0.15 -1.74 10.82 -39.41 -0.43 -2.17 16 22 C -0.22 -1.93 10.89 -39.82 -0.43 -2.36 16 23 C -0.01 -0.13 12.08 29.52 0.36 0.23 16 24 O -0.15 -2.02 10.67 4.84 0.05 -1.97 16 25 N -0.36 -5.73 12.19 30.99 0.38 -5.35 16 26 O 0.09 1.35 11.29 17.98 0.20 1.55 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.06 1.39 3.41 -51.92 -0.18 1.22 16 33 H 0.07 1.48 7.36 -51.93 -0.38 1.09 16 34 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.09 1.63 8.04 -51.93 -0.42 1.21 16 36 H 0.10 1.76 7.86 -51.93 -0.41 1.35 16 37 H 0.11 1.46 8.13 -51.93 -0.42 1.03 16 38 H 0.12 1.69 8.06 -51.93 -0.42 1.27 16 39 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.21 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -29.93 355.41 -5.44 -35.36 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -5.16 Total: 3.61 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.52 Total: 0.03 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.79 Total: -46.14 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.34 Total: -13.77 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.25 Total: 15.55 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.93 -5.44 -35.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299136085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.458 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds