Wall clock time and date at job start Tue Mar 31 2020 12:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 N 1.46497 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00277 * 270.00003 * 4 3 2 6 6 H 1.08000 * 119.99967 * 140.69345 * 5 4 3 7 7 C 1.38951 * 120.00237 * 320.70153 * 5 4 3 8 8 N 1.31408 * 120.00488 * 159.03397 * 7 5 4 9 9 Si 1.86807 * 119.99561 * 339.03340 * 7 5 4 10 10 H 1.48499 * 109.46979 * 95.81944 * 9 7 5 11 11 H 1.48506 * 109.46875 * 215.81816 * 9 7 5 12 12 H 1.48493 * 109.47393 * 335.81847 * 9 7 5 13 13 C 1.34781 * 119.99662 * 90.00470 * 4 3 2 14 14 O 1.21284 * 119.99990 * 5.01041 * 13 4 3 15 15 C 1.50700 * 119.99667 * 185.01131 * 13 4 3 16 16 C 1.52999 * 109.47043 * 185.43116 * 15 13 4 17 17 C 1.50700 * 109.46983 * 179.21965 * 16 15 13 18 18 N 1.30924 * 126.40711 * 90.00073 * 17 16 15 19 19 C 1.35391 * 105.57981 * 179.97438 * 18 17 16 20 20 C 1.47726 * 126.45093 * 179.97438 * 19 18 17 21 21 C 1.35990 * 125.93842 * 180.02562 * 20 19 18 22 22 C 1.40828 * 106.73718 * 179.73112 * 21 20 19 23 23 C 1.34810 * 107.03768 * 0.37813 * 22 21 20 24 24 O 1.34190 * 108.68418 * 359.61589 * 23 22 21 25 25 N 1.31044 * 107.10232 * 0.24009 * 19 18 17 26 26 O 1.21292 * 110.03906 * 359.57533 * 25 19 18 27 27 H 1.09001 * 109.46900 * 299.99719 * 1 2 3 28 28 H 1.08993 * 109.47549 * 59.99540 * 1 2 3 29 29 H 1.09006 * 109.46976 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46900 * 240.00281 * 2 1 3 31 31 H 1.09001 * 109.47243 * 120.00415 * 2 1 3 32 32 H 1.09007 * 109.46566 * 60.00490 * 3 2 1 33 33 H 1.08993 * 109.47226 * 300.00657 * 3 2 1 34 34 H 0.96996 * 120.00597 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47296 * 65.42724 * 15 13 4 36 36 H 1.09001 * 109.47478 * 305.43425 * 15 13 4 37 37 H 1.08994 * 109.47011 * 59.21729 * 16 15 13 38 38 H 1.08999 * 109.46735 * 299.21531 * 16 15 13 39 39 H 1.07998 * 126.63076 * 359.96723 * 21 20 19 40 40 H 1.07998 * 126.47667 * 180.25681 * 22 21 20 41 41 H 1.08003 * 125.65538 * 179.88619 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.0878 0.8498 1.2916 7 6 3.7325 2.2043 2.2540 8 7 4.1089 1.9129 3.4789 9 14 2.5810 3.6430 1.9481 10 1 1.1761 3.2023 2.1413 11 1 2.8921 4.7376 2.9022 12 1 2.7593 4.1329 0.5576 13 6 4.1783 1.4427 -1.1682 14 8 3.5749 1.5347 -2.2162 15 6 5.6810 1.3287 -1.1713 16 6 6.2016 1.4892 -2.6010 17 6 7.7056 1.3943 -2.6015 18 7 8.4154 0.3032 -2.7428 19 6 9.7084 0.6997 -2.6794 20 6 10.8988 -0.1684 -2.7863 21 6 12.1939 0.2413 -2.7206 22 6 12.9914 -0.9107 -2.8626 23 6 12.1529 -1.9553 -3.0149 24 8 10.8902 -1.5038 -2.9650 25 7 9.7050 1.9977 -2.4995 26 8 8.5646 2.4087 -2.4586 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.7885 2.4446 4.2242 35 1 5.9721 0.3515 -0.7862 36 1 6.1060 2.1092 -0.5401 37 1 5.8987 2.4608 -2.9911 38 1 5.7876 0.7004 -3.2291 39 1 12.5432 1.2538 -2.5822 40 1 14.0706 -0.9496 -2.8533 41 1 12.4484 -2.9853 -3.1498 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299136085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:52 Heat of formation + Delta-G solvation = 33.242563 kcal Electronic energy + Delta-G solvation = -25868.250620 eV Core-core repulsion = 21946.087489 eV Total energy + Delta-G solvation = -3922.163131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.76913 -43.66215 -40.80122 -37.43282 -37.10575 -35.64596 -34.69877 -34.18216 -33.52330 -32.38584 -30.60479 -28.12429 -27.12384 -25.81956 -25.60564 -23.81648 -22.65307 -22.51921 -21.61918 -20.87788 -19.52492 -19.34831 -18.64203 -18.15422 -17.90664 -17.24673 -17.18027 -16.51001 -16.33024 -15.96651 -15.80228 -15.22448 -14.92656 -14.60049 -14.26573 -14.09793 -13.99551 -13.81636 -13.69175 -13.55762 -13.45148 -13.27709 -13.19202 -13.02228 -12.54706 -12.47475 -12.38154 -12.15616 -12.09510 -11.88828 -11.55287 -11.47737 -11.05244 -11.02388 -10.48993 -9.70603 -9.55017 -8.51737 -6.15218 -0.41869 0.27305 1.20536 1.24602 1.33665 1.37644 1.44522 1.57623 1.70025 1.86782 2.18640 2.37312 2.65317 2.97738 3.16011 3.63604 3.87881 3.90867 3.97820 4.02391 4.07055 4.16365 4.21488 4.41087 4.43598 4.48409 4.58926 4.64342 4.72942 4.73919 4.83726 4.87725 4.93638 4.96221 5.03119 5.13318 5.26198 5.33853 5.39255 5.52779 5.91141 6.06257 6.25465 6.86370 6.94172 7.39566 7.75933 8.62144 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017876 B = 0.002786 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.971069 B =10049.467341 C =10448.582566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.096 3.904 4 N -0.475 5.475 5 C -0.344 4.344 6 H 0.083 0.917 7 C 0.033 3.967 8 N -0.895 5.895 9 Si 0.924 3.076 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.485 3.515 14 O -0.608 6.608 15 C -0.112 4.112 16 C -0.002 4.002 17 C 0.216 3.784 18 N -0.494 5.494 19 C 0.234 3.766 20 C 0.003 3.997 21 C -0.140 4.140 22 C -0.221 4.221 23 C 0.001 3.999 24 O -0.178 6.178 25 N -0.375 5.375 26 O 0.087 5.913 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.165 0.835 40 H 0.192 0.808 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 -4.112 -10.823 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.164 4.164 3 C -0.027 4.027 4 N -0.196 5.196 5 C -0.472 4.472 6 H 0.101 0.899 7 C -0.171 4.171 8 N -0.532 5.532 9 Si 0.750 3.250 10 H -0.185 1.185 11 H -0.213 1.213 12 H -0.188 1.188 13 C 0.275 3.725 14 O -0.494 6.494 15 C -0.153 4.153 16 C -0.041 4.041 17 C -0.004 4.004 18 N -0.227 5.227 19 C -0.035 4.035 20 C -0.048 4.048 21 C -0.163 4.163 22 C -0.239 4.239 23 C -0.068 4.068 24 O -0.073 6.073 25 N -0.084 5.084 26 O 0.027 5.973 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.183 0.817 40 H 0.209 0.791 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 10.635 -4.155 -11.113 15.933 hybrid contribution -0.394 0.774 0.644 1.081 sum 10.241 -3.381 -10.470 15.031 Atomic orbital electron populations 1.21682 0.93419 1.02808 1.02076 1.21703 0.97373 0.95891 1.01446 1.21782 0.81657 0.98330 1.00914 1.43832 1.04828 1.65470 1.05423 1.18908 1.11575 1.28329 0.88364 0.89925 1.25847 0.98259 0.98695 0.94341 1.69822 1.45369 1.38796 0.99193 0.86168 0.79826 0.80227 0.78822 1.18472 1.21342 1.18766 1.20548 0.90082 0.78735 0.83102 1.90543 1.71112 1.55852 1.31914 1.21279 0.92608 1.05052 0.96316 1.20094 0.77436 1.08209 0.98409 1.29044 0.98269 0.80407 0.92641 1.72185 1.00997 1.27688 1.21850 1.22594 0.90517 0.88462 1.01940 1.18164 0.90360 0.81556 1.14687 1.22178 0.90039 1.02261 1.01796 1.22227 1.02800 0.90518 1.08368 1.25391 0.78407 1.02364 1.00626 1.84109 1.32616 1.20296 1.70256 1.74937 0.99794 1.11775 1.21908 1.85297 1.10499 1.36554 1.64986 0.92786 0.91839 0.90862 0.92520 0.92838 0.92455 0.90872 0.91060 0.89190 0.88288 0.85513 0.85912 0.81730 0.79084 0.72713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.30 16 2 C -0.13 -4.57 6.26 30.59 0.19 -4.38 16 3 C 0.10 3.98 4.24 86.38 0.37 4.34 16 4 N -0.48 -21.56 2.14 -635.55 -1.36 -22.92 16 5 C -0.34 -17.26 8.93 84.04 0.75 -16.51 16 6 H 0.08 4.41 7.44 -2.91 -0.02 4.39 16 7 C 0.03 1.71 5.32 84.93 0.45 2.16 16 8 N -0.90 -48.60 13.96 21.66 0.30 -48.30 16 9 Si 0.92 40.50 25.02 68.60 1.72 42.21 16 10 H -0.26 -10.65 6.71 99.48 0.67 -9.99 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.48 20.37 7.62 87.66 0.67 21.04 16 14 O -0.61 -26.65 15.54 -3.04 -0.05 -26.69 16 15 C -0.11 -3.92 4.33 29.85 0.13 -3.79 16 16 C 0.00 -0.07 5.14 29.85 0.15 0.08 16 17 C 0.22 6.59 7.74 88.35 0.68 7.27 16 18 N -0.49 -16.70 11.58 -302.27 -3.50 -20.20 16 19 C 0.23 7.63 8.06 136.95 1.10 8.73 16 20 C 0.00 0.09 7.26 24.26 0.18 0.27 16 21 C -0.14 -3.08 10.82 22.38 0.24 -2.83 16 22 C -0.22 -3.29 10.89 22.12 0.24 -3.05 16 23 C 0.00 0.02 12.08 67.03 0.81 0.83 16 24 O -0.18 -4.57 10.67 -5.61 -0.06 -4.63 16 25 N -0.38 -12.02 12.19 -58.77 -0.72 -12.74 16 26 O 0.09 2.67 11.29 74.42 0.84 3.51 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.44 3.41 -2.38 -0.01 2.44 16 33 H 0.07 2.98 7.36 -2.39 -0.02 2.96 16 34 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.09 3.22 8.04 -2.39 -0.02 3.20 16 36 H 0.10 3.51 7.86 -2.39 -0.02 3.49 16 37 H 0.13 3.21 8.13 -2.39 -0.02 3.19 16 38 H 0.12 3.43 8.06 -2.39 -0.02 3.41 16 39 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.26 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -65.21 355.41 4.87 -60.34 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.02 Total: 18.57 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.68 Total: 10.85 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.28 Total: -104.16 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: 0.73 Total: -27.82 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 1.72 Total: 42.21 kcal Total: -65.21 4.87 -60.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299136085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.585 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds