Wall clock time and date at job start Tue Mar 31 2020 12:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47329 * 2 1 4 4 C 1.52997 * 109.47130 * 239.99481 * 2 1 3 5 5 N 1.46503 * 109.46649 * 119.99912 * 2 1 3 6 6 N 1.39952 * 125.78937 * 253.92229 * 5 2 1 7 7 C 1.30508 * 108.84271 * 179.97438 * 6 5 2 8 8 C 1.41151 * 108.06540 * 0.02562 * 7 6 5 9 9 C 1.47745 * 126.37705 * 180.26080 * 8 7 6 10 10 O 1.35235 * 120.00183 * 359.68888 * 9 8 7 11 11 N 1.30138 * 119.99769 * 179.68555 * 9 8 7 12 12 C 1.46501 * 120.00035 * 184.76670 * 11 9 8 13 13 C 1.50697 * 109.47176 * 116.66392 * 12 11 9 14 14 H 1.08007 * 119.99853 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00429 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99798 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00291 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47357 * 90.00155 * 17 15 13 19 19 H 1.48503 * 109.47373 * 210.00116 * 17 15 13 20 20 H 1.48501 * 109.47206 * 330.00127 * 17 15 13 21 21 C 1.34446 * 125.79325 * 73.90669 * 5 2 1 22 22 C 1.50707 * 126.28599 * 0.02562 * 21 5 2 23 23 F 1.39899 * 109.47111 * 89.31941 * 22 21 5 24 24 F 1.39901 * 109.47065 * 209.32478 * 22 21 5 25 25 F 1.39902 * 109.46629 * 329.32311 * 22 21 5 26 26 H 1.09006 * 109.47152 * 315.35856 * 1 2 3 27 27 H 1.09003 * 109.47121 * 75.35523 * 1 2 3 28 28 H 1.08999 * 109.47281 * 195.36223 * 1 2 3 29 29 H 1.08995 * 109.47480 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47134 * 300.00158 * 3 2 1 31 31 H 1.09002 * 109.47481 * 59.99897 * 3 2 1 32 32 H 1.08999 * 109.46996 * 300.00591 * 4 2 1 33 33 H 1.09005 * 109.46749 * 60.00110 * 4 2 1 34 34 H 1.08995 * 109.46775 * 180.02562 * 4 2 1 35 35 H 1.08004 * 125.96964 * 179.97438 * 7 6 5 36 36 H 0.96701 * 113.99935 * 84.96671 * 10 9 8 37 37 H 1.09000 * 109.47558 * 236.66293 * 12 11 9 38 38 H 1.08995 * 109.47244 * 356.66575 * 12 11 9 39 39 H 0.96991 * 119.99959 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0182 -0.6906 1.1962 6 7 2.5874 -0.0793 2.3192 7 6 2.9036 -1.0019 3.1864 8 6 2.5445 -2.2544 2.6436 9 6 2.7186 -3.5718 3.2896 10 8 3.2757 -3.6537 4.5191 11 7 2.3357 -4.6533 2.6753 12 6 2.4114 -5.9482 3.3562 13 6 1.0238 -6.5140 3.5153 14 1 0.1707 -5.9641 3.1458 15 6 0.8430 -7.7336 4.1326 16 7 1.8817 -8.4029 4.5830 17 14 -0.8771 -8.4345 4.3305 18 1 -1.2128 -9.2644 3.1457 19 1 -0.9318 -9.2739 5.5543 20 1 -1.8541 -7.3225 4.4489 21 6 1.9953 -2.0191 1.4017 22 6 1.4665 -3.0600 0.4486 23 9 2.4941 -3.4762 -0.4045 24 9 0.9894 -4.1570 1.1740 25 9 0.4249 -2.5128 -0.3083 26 1 -0.3634 0.7312 0.7221 27 1 -0.3633 0.2598 -0.9943 28 1 -0.3634 -0.9909 0.2722 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9564 0.8900 32 1 1.6766 -1.7490 -1.2491 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2489 35 1 3.3610 -0.8361 4.1507 36 1 2.6487 -3.5262 5.2442 37 1 3.0180 -6.6346 2.7653 38 1 2.8648 -5.8163 4.3385 39 1 1.7546 -9.2610 5.0169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331217619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:04 Heat of formation + Delta-G solvation = -80.783938 kcal Electronic energy + Delta-G solvation = -28858.229854 eV Core-core repulsion = 24389.265423 eV Total energy + Delta-G solvation = -4468.964431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.42690 -48.90528 -48.56105 -42.68685 -39.54346 -37.75332 -35.72126 -34.24806 -32.78513 -31.75564 -29.20610 -28.53429 -28.33655 -27.28809 -25.20880 -23.88257 -22.64563 -21.14221 -20.98143 -19.69410 -19.42032 -18.85232 -18.51695 -17.99404 -16.79449 -16.73022 -16.65341 -16.39330 -16.17115 -15.89641 -15.69322 -15.27691 -15.17448 -14.97665 -14.76280 -14.51228 -14.46132 -14.18220 -13.86292 -13.40206 -13.30772 -13.16779 -13.11645 -12.95896 -12.71728 -12.52425 -12.49248 -12.34558 -12.23114 -11.92774 -11.82721 -11.61486 -11.07550 -10.81496 -10.72969 -10.13680 -9.43080 -8.24061 -6.37241 -0.11050 0.84989 0.92366 1.38929 1.41093 1.52101 1.55778 1.95366 2.39347 2.49148 2.87151 3.03229 3.07873 3.25212 3.34970 3.55601 3.66591 3.79452 3.87284 4.13914 4.46942 4.51198 4.54650 4.61480 4.69385 4.75803 4.81660 4.96744 5.05187 5.13258 5.18056 5.20043 5.30391 5.38263 5.59547 5.67488 6.04818 6.28243 6.61469 6.71953 7.17282 7.37766 8.86109 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.019794 B = 0.004433 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.196397 B = 6314.782506 C = 6967.836082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.161 3.839 3 C -0.134 4.134 4 C -0.194 4.194 5 N -0.318 5.318 6 N -0.266 5.266 7 C 0.087 3.913 8 C -0.162 4.162 9 C 0.353 3.647 10 O -0.526 6.526 11 N -0.505 5.505 12 C 0.186 3.814 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.973 3.027 18 H -0.273 1.273 19 H -0.276 1.276 20 H -0.265 1.265 21 C 0.018 3.982 22 C 0.532 3.468 23 F -0.173 7.173 24 F -0.131 7.131 25 F -0.160 7.160 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.060 0.940 35 H 0.233 0.767 36 H 0.408 0.592 37 H 0.008 0.992 38 H 0.002 0.998 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 21.626 -9.044 23.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.081 3.919 3 C -0.191 4.191 4 C -0.251 4.251 5 N -0.100 5.100 6 N -0.086 5.086 7 C -0.099 4.099 8 C -0.177 4.177 9 C 0.125 3.875 10 O -0.334 6.334 11 N -0.231 5.231 12 C 0.058 3.942 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.201 1.201 20 H -0.190 1.190 21 C -0.116 4.116 22 C 0.476 3.524 23 F -0.154 7.154 24 F -0.112 7.112 25 F -0.141 7.141 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.249 0.751 36 H 0.268 0.732 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.844 22.300 -10.356 24.656 hybrid contribution -0.585 -1.990 1.392 2.498 sum -2.429 20.310 -8.963 22.332 Atomic orbital electron populations 1.22684 0.91303 1.03970 1.05376 1.21449 0.95906 0.94875 0.79675 1.21915 1.01789 0.90830 1.04564 1.22933 1.02271 1.02865 0.97047 1.49162 1.44101 1.01329 1.15412 1.77185 1.16145 1.21277 0.93967 1.24490 0.97909 0.86825 1.00684 1.18832 1.11121 0.92964 0.94769 1.21217 0.91697 0.90412 0.84196 1.84703 1.39754 1.93850 1.15078 1.72965 1.12280 1.01434 1.36426 1.19418 0.96919 0.85471 0.92371 1.21242 0.92278 1.04776 1.38119 0.92619 1.25901 1.01712 0.96782 0.94692 1.70083 1.31904 1.15011 1.39799 0.85340 0.78720 0.78362 0.77939 1.19818 1.20058 1.18980 1.20991 1.06572 0.87026 0.97026 1.17332 0.75732 0.80951 0.78420 1.93195 1.59507 1.91059 1.71654 1.93550 1.87977 1.53729 1.75968 1.93019 1.59315 1.84634 1.77165 0.91164 0.87397 0.91671 0.92143 0.87613 0.91216 0.91503 0.86400 0.92049 0.75086 0.73204 0.97418 0.98014 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.33 71.98 0.60 -2.35 16 2 C 0.16 3.04 1.06 3.60 0.00 3.05 16 3 C -0.13 -1.87 8.01 71.98 0.58 -1.29 16 4 C -0.19 -3.47 7.84 71.98 0.56 -2.91 16 5 N -0.32 -8.21 3.42 -293.20 -1.00 -9.21 16 6 N -0.27 -6.69 11.56 -56.34 -0.65 -7.35 16 7 C 0.09 2.17 11.87 85.60 1.02 3.19 16 8 C -0.16 -5.32 6.09 -20.15 -0.12 -5.45 16 9 C 0.35 14.16 7.76 87.46 0.68 14.84 16 10 O -0.53 -19.04 11.81 -85.17 -1.01 -20.05 16 11 N -0.51 -24.54 6.21 -459.34 -2.85 -27.39 16 12 C 0.19 10.60 6.10 85.63 0.52 11.12 16 13 C -0.53 -31.08 9.39 25.60 0.24 -30.84 16 14 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 15 C 0.01 0.47 5.46 84.66 0.46 0.93 16 16 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 17 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 C 0.02 0.58 6.02 42.06 0.25 0.83 16 22 C 0.53 18.02 2.57 71.24 0.18 18.20 16 23 F -0.17 -5.95 15.93 44.97 0.72 -5.23 16 24 F -0.13 -5.63 13.10 44.97 0.59 -5.04 16 25 F -0.16 -4.45 10.60 44.97 0.48 -3.97 16 26 H 0.07 1.11 8.05 -2.38 -0.02 1.09 16 27 H 0.11 1.20 8.05 -2.39 -0.02 1.18 16 28 H 0.06 1.41 5.12 -2.39 -0.01 1.40 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.05 8.04 -2.39 -0.02 1.03 16 32 H 0.07 1.49 2.94 -2.39 -0.01 1.48 16 33 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.23 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.41 11.31 9.06 -74.06 -0.67 10.64 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.00 0.11 6.73 -2.39 -0.02 0.10 16 39 H 0.27 15.17 8.31 -92.72 -0.77 14.40 16 Total: -1.00 -73.11 330.12 4.00 -69.10 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.44 Total: 9.15 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 4.98 Total: 9.32 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.22 Total: -100.13 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.01 Total: -20.05 kcal Atomic # 9 Polarization: -16.03 SS G_CDS: 1.78 Total: -14.24 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -73.11 4.00 -69.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331217619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.682 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds