Wall clock time and date at job start Tue Mar 31 2020 13:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47040 * 2 1 4 4 O 1.21253 * 120.00080 * 0.02562 * 3 2 1 5 5 C 1.47187 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.39880 * 120.13975 * 359.72584 * 5 3 2 7 7 C 1.37905 * 119.96709 * 179.70001 * 6 5 3 8 8 C 1.38303 * 120.25183 * 0.57645 * 7 6 5 9 9 C 1.38990 * 120.27409 * 359.72081 * 8 7 6 10 10 N 1.39984 * 119.98349 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00201 * 213.31855 * 10 9 8 12 12 O 1.21586 * 119.99693 * 5.32301 * 11 10 9 13 13 N 1.34777 * 119.99966 * 185.31463 * 11 10 9 14 14 C 1.46503 * 119.99695 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46979 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99816 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99967 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99795 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00557 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99895 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00077 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99994 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47443 * 89.99932 * 22 20 18 24 24 H 1.48499 * 109.47194 * 210.00164 * 22 20 18 25 25 H 1.48499 * 109.47018 * 330.00057 * 22 20 18 26 26 C 1.38556 * 120.02970 * 359.97438 * 9 8 7 27 27 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46748 * 299.99978 * 1 2 3 29 29 H 1.08996 * 109.47390 * 59.99680 * 1 2 3 30 30 H 1.08996 * 109.47390 * 120.00320 * 2 1 3 31 31 H 1.09001 * 109.47266 * 239.99927 * 2 1 3 32 32 H 1.08001 * 120.01589 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.87809 * 180.27327 * 7 6 5 34 34 H 1.07998 * 119.86608 * 179.73862 * 8 7 6 35 35 H 0.97005 * 119.99983 * 33.32112 * 10 9 8 36 36 H 0.97001 * 119.99773 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.47103 * 300.00341 * 14 13 11 38 38 H 1.08998 * 109.47029 * 60.00498 * 14 13 11 39 39 H 0.96998 * 119.99956 * 359.97438 * 17 15 14 40 40 H 0.97002 * 119.99864 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.12164 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6288 0.0047 7 6 5.7460 0.8848 -0.0021 8 6 6.2089 2.1881 -0.0021 9 6 5.3123 3.2501 -0.0011 10 7 5.7874 4.5668 -0.0006 11 6 5.0991 5.5314 0.6414 12 8 4.1190 5.2427 1.3005 13 7 5.4973 6.8160 0.5530 14 6 4.7487 7.8646 1.2504 15 6 5.3955 9.2008 0.9909 16 8 6.3842 9.2703 0.2918 17 7 4.8753 10.3184 1.5357 18 6 5.4634 11.5339 1.2991 19 1 6.3437 11.5960 0.6767 20 6 4.9274 12.6861 1.8612 21 7 5.4914 13.8513 1.6349 22 14 3.4052 12.5788 2.9385 23 1 3.8124 12.3771 4.3523 24 1 2.6268 13.8382 2.8224 25 1 2.5660 11.4359 2.4972 26 6 3.9484 3.0061 -0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 4.0337 -0.3904 0.0096 33 1 6.4486 0.0645 -0.0025 34 1 7.2714 2.3814 -0.0032 35 1 6.6122 4.7850 -0.4623 36 1 6.2791 7.0463 0.0270 37 1 3.7216 7.8815 0.8858 38 1 4.7507 7.6614 2.3213 39 1 4.0844 10.2627 2.0945 40 1 5.1170 14.6557 2.0270 41 1 3.2503 3.8302 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350195105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:44 Heat of formation + Delta-G solvation = -71.509071 kcal Electronic energy + Delta-G solvation = -25169.669123 eV Core-core repulsion = 21242.963621 eV Total energy + Delta-G solvation = -3926.705503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89369 -39.89050 -38.72877 -38.09421 -34.99900 -34.59243 -33.84901 -33.18286 -31.83576 -31.42903 -30.04505 -27.64564 -25.87373 -24.48228 -23.08332 -22.80959 -20.88120 -19.95318 -19.66140 -18.92946 -18.28412 -17.77688 -16.51785 -16.13124 -15.82535 -15.75990 -15.66434 -15.37972 -15.08577 -14.66290 -14.56553 -14.26240 -14.08542 -13.77449 -13.58582 -13.17363 -12.83386 -12.60249 -12.54067 -12.31833 -12.20487 -12.18519 -12.07967 -11.72020 -11.49379 -11.25651 -10.65704 -10.64283 -10.20668 -10.08407 -9.90846 -9.72686 -9.22694 -9.05363 -8.81873 -8.34300 -8.31299 -6.43322 -3.96150 0.41592 1.09984 2.15655 2.46878 2.98539 3.03490 3.06692 3.11789 3.52222 3.60863 3.68998 4.01548 4.10328 4.50974 4.52948 4.62429 4.73983 4.77210 4.80196 4.95816 5.11552 5.14648 5.21086 5.39476 5.48735 5.57251 5.59837 5.63357 5.73998 5.78151 5.88438 5.98076 6.02878 6.09736 6.21667 6.46389 6.72921 6.80574 7.33659 7.41686 7.89576 7.98048 8.39684 8.48699 8.78618 9.26725 9.59475 10.68638 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002341 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.757532 B =11957.889727 C =13192.892812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.168 4.168 3 C 0.392 3.608 4 O -0.444 6.444 5 C -0.153 4.153 6 C -0.098 4.098 7 C -0.112 4.112 8 C -0.121 4.121 9 C 0.165 3.835 10 N -0.689 5.689 11 C 0.703 3.297 12 O -0.576 6.576 13 N -0.717 5.717 14 C 0.124 3.876 15 C 0.437 3.563 16 O -0.580 6.580 17 N -0.574 5.574 18 C -0.311 4.311 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.873 5.873 22 Si 0.879 3.121 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.266 1.266 26 C -0.064 4.064 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.410 0.590 36 H 0.410 0.590 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.375 0.625 40 H 0.276 0.724 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 -29.570 -2.969 29.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C 0.269 3.731 4 O -0.318 6.318 5 C -0.155 4.155 6 C -0.117 4.117 7 C -0.130 4.130 8 C -0.142 4.142 9 C 0.069 3.931 10 N -0.336 5.336 11 C 0.403 3.597 12 O -0.453 6.453 13 N -0.374 5.374 14 C -0.004 4.004 15 C 0.223 3.777 16 O -0.465 6.465 17 N -0.212 5.212 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.512 5.512 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.192 1.192 26 C -0.085 4.085 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.246 0.754 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.208 0.792 40 H 0.087 0.913 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.571 -28.877 -2.786 29.230 hybrid contribution -0.186 0.406 0.463 0.643 sum -3.756 -28.471 -2.323 28.812 Atomic orbital electron populations 1.21607 0.93632 1.01764 1.03277 1.21974 0.98363 0.95631 1.04550 1.22538 0.87782 0.91271 0.71531 1.90560 1.58230 1.47770 1.35253 1.20392 0.95094 0.93709 1.06292 1.21337 0.92942 0.98438 0.98972 1.20870 0.95476 0.96040 1.00634 1.21139 0.99445 0.91879 1.01747 1.17413 0.92545 0.83097 1.00052 1.42611 1.28415 1.05898 1.56711 1.15834 0.82995 0.80756 0.80120 1.90966 1.27809 1.81590 1.44895 1.44746 1.33905 1.04086 1.54638 1.20879 0.95723 0.85981 0.97838 1.19590 0.87398 0.84921 0.85765 1.90536 1.27802 1.85984 1.42142 1.42108 1.27114 1.06993 1.44963 1.19433 1.12725 0.81081 1.30679 0.86061 1.25074 0.98209 0.94940 0.97677 1.69617 1.40071 0.98171 1.43316 0.86669 0.82752 0.78768 0.81315 1.19360 1.19936 1.19161 1.21526 0.94632 0.97129 0.95194 0.92034 0.92011 0.92072 0.88317 0.88335 0.85115 0.85014 0.85140 0.75376 0.75184 0.89549 0.89583 0.79175 0.91340 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.17 -1.10 5.03 -27.88 -0.14 -1.24 16 3 C 0.39 4.29 7.12 -30.68 -0.22 4.07 16 4 O -0.44 -6.65 15.97 5.58 0.09 -6.56 16 5 C -0.15 -1.66 5.87 -105.09 -0.62 -2.27 16 6 C -0.10 -0.73 9.47 -39.09 -0.37 -1.10 16 7 C -0.11 -0.77 10.02 -39.68 -0.40 -1.17 16 8 C -0.12 -1.01 9.95 -39.28 -0.39 -1.40 16 9 C 0.16 1.90 6.27 -83.74 -0.53 1.37 16 10 N -0.69 -7.96 5.35 -14.26 -0.08 -8.03 16 11 C 0.70 10.77 8.30 -86.92 -0.72 10.04 16 12 O -0.58 -10.71 14.03 5.29 0.07 -10.63 16 13 N -0.72 -11.12 5.53 -66.41 -0.37 -11.49 16 14 C 0.12 2.13 6.15 -5.19 -0.03 2.10 16 15 C 0.44 9.49 7.85 -10.99 -0.09 9.40 16 16 O -0.58 -14.38 15.24 5.55 0.08 -14.30 16 17 N -0.57 -13.27 5.09 -10.97 -0.06 -13.32 16 18 C -0.31 -8.51 10.16 -14.93 -0.15 -8.67 16 19 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 20 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 21 N -0.87 -24.84 13.96 55.50 0.77 -24.06 16 22 Si 0.88 19.01 27.74 -169.99 -4.71 14.30 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 26 C -0.06 -0.86 8.20 -38.90 -0.32 -1.18 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.10 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.10 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.13 0.55 7.04 -52.49 -0.37 0.19 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.41 3.42 8.83 -40.82 -0.36 3.06 16 36 H 0.41 6.09 7.46 -40.82 -0.30 5.78 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 40 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.15 2.46 6.00 -52.49 -0.31 2.15 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -35.22 356.44 -7.48 -42.70 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -4.94 Total: 15.66 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: -3.72 Total: 10.36 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.90 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: 0.25 Total: -31.49 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.22 -7.48 -42.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350195105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.806 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds