Wall clock time and date at job start Tue Mar 31 2020 13:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47040 * 2 1 4 4 O 1.21253 * 120.00080 * 0.02562 * 3 2 1 5 5 C 1.47187 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.39880 * 120.13975 * 359.72584 * 5 3 2 7 7 C 1.37905 * 119.96709 * 179.70001 * 6 5 3 8 8 C 1.38303 * 120.25183 * 0.57645 * 7 6 5 9 9 C 1.38990 * 120.27409 * 359.72081 * 8 7 6 10 10 N 1.39984 * 119.98349 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00201 * 213.31855 * 10 9 8 12 12 O 1.21586 * 119.99693 * 5.32301 * 11 10 9 13 13 N 1.34777 * 119.99966 * 185.31463 * 11 10 9 14 14 C 1.46503 * 119.99695 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46979 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99816 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99967 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99795 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00557 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99895 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00077 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99994 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47443 * 89.99932 * 22 20 18 24 24 H 1.48499 * 109.47194 * 210.00164 * 22 20 18 25 25 H 1.48499 * 109.47018 * 330.00057 * 22 20 18 26 26 C 1.38556 * 120.02970 * 359.97438 * 9 8 7 27 27 H 1.09000 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46748 * 299.99978 * 1 2 3 29 29 H 1.08996 * 109.47390 * 59.99680 * 1 2 3 30 30 H 1.08996 * 109.47390 * 120.00320 * 2 1 3 31 31 H 1.09001 * 109.47266 * 239.99927 * 2 1 3 32 32 H 1.08001 * 120.01589 * 359.97438 * 6 5 3 33 33 H 1.08002 * 119.87809 * 180.27327 * 7 6 5 34 34 H 1.07998 * 119.86608 * 179.73862 * 8 7 6 35 35 H 0.97005 * 119.99983 * 33.32112 * 10 9 8 36 36 H 0.97001 * 119.99773 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.47103 * 300.00341 * 14 13 11 38 38 H 1.08998 * 109.47029 * 60.00498 * 14 13 11 39 39 H 0.96998 * 119.99956 * 359.97438 * 17 15 14 40 40 H 0.97002 * 119.99864 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.12164 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6288 0.0047 7 6 5.7460 0.8848 -0.0021 8 6 6.2089 2.1881 -0.0021 9 6 5.3123 3.2501 -0.0011 10 7 5.7874 4.5668 -0.0006 11 6 5.0991 5.5314 0.6414 12 8 4.1190 5.2427 1.3005 13 7 5.4973 6.8160 0.5530 14 6 4.7487 7.8646 1.2504 15 6 5.3955 9.2008 0.9909 16 8 6.3842 9.2703 0.2918 17 7 4.8753 10.3184 1.5357 18 6 5.4634 11.5339 1.2991 19 1 6.3437 11.5960 0.6767 20 6 4.9274 12.6861 1.8612 21 7 5.4914 13.8513 1.6349 22 14 3.4052 12.5788 2.9385 23 1 3.8124 12.3771 4.3523 24 1 2.6268 13.8382 2.8224 25 1 2.5660 11.4359 2.4972 26 6 3.9484 3.0061 -0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 4.0337 -0.3904 0.0096 33 1 6.4486 0.0645 -0.0025 34 1 7.2714 2.3814 -0.0032 35 1 6.6122 4.7850 -0.4623 36 1 6.2791 7.0463 0.0270 37 1 3.7216 7.8815 0.8858 38 1 4.7507 7.6614 2.3213 39 1 4.0844 10.2627 2.0945 40 1 5.1170 14.6557 2.0270 41 1 3.2503 3.8302 -0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350195105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:43 Heat of formation + Delta-G solvation = -99.010801 kcal Electronic energy + Delta-G solvation = -25170.861688 eV Core-core repulsion = 21242.963621 eV Total energy + Delta-G solvation = -3927.898067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90945 -40.89376 -40.30915 -39.12320 -36.37410 -35.91057 -35.45975 -33.87709 -33.80867 -32.13006 -30.97787 -29.09880 -26.62971 -26.23927 -23.88178 -23.59472 -21.94995 -21.52976 -20.77210 -20.54419 -19.65351 -18.70275 -17.54931 -17.35210 -17.13607 -16.84592 -16.62549 -16.49066 -16.41557 -15.93774 -15.81816 -15.56982 -15.10611 -14.94416 -14.56856 -14.37195 -14.30773 -14.06263 -13.88176 -13.51297 -13.13543 -12.99607 -12.90121 -12.73750 -12.47449 -12.41520 -12.02927 -12.01570 -11.65023 -11.61038 -11.32055 -10.70452 -10.70109 -10.39018 -10.30811 -9.95525 -9.15431 -8.48198 -6.10155 -0.32127 0.34681 1.28827 1.31748 1.33889 1.41653 1.44678 1.74235 1.94735 2.17850 2.69114 2.86609 2.97617 3.07912 3.17832 3.90091 3.92845 4.01135 4.14538 4.22339 4.29606 4.32176 4.33680 4.36254 4.47487 4.56391 4.79371 4.98055 5.00385 5.06698 5.12800 5.24050 5.31657 5.33493 5.40637 5.45056 5.49000 5.81435 5.85333 5.97520 6.45272 6.58312 6.74637 6.80720 7.23932 7.32090 7.73562 8.68005 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002341 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.757532 B =11957.889727 C =13192.892812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.386 3.614 4 O -0.504 6.504 5 C -0.175 4.175 6 C -0.077 4.077 7 C -0.103 4.103 8 C -0.109 4.109 9 C 0.136 3.864 10 N -0.674 5.674 11 C 0.703 3.297 12 O -0.611 6.611 13 N -0.717 5.717 14 C 0.137 3.863 15 C 0.446 3.554 16 O -0.613 6.613 17 N -0.577 5.577 18 C -0.331 4.331 19 H 0.065 0.935 20 C -0.007 4.007 21 N -0.924 5.924 22 Si 0.957 3.043 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.235 1.235 26 C -0.099 4.099 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.425 0.575 36 H 0.414 0.586 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.392 0.608 40 H 0.282 0.718 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 -34.144 -2.120 34.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.267 3.733 4 O -0.382 6.382 5 C -0.176 4.176 6 C -0.096 4.096 7 C -0.121 4.121 8 C -0.130 4.130 9 C 0.041 3.959 10 N -0.323 5.323 11 C 0.403 3.597 12 O -0.491 6.491 13 N -0.375 5.375 14 C 0.008 3.992 15 C 0.234 3.766 16 O -0.499 6.499 17 N -0.217 5.217 18 C -0.460 4.460 19 H 0.083 0.917 20 C -0.207 4.207 21 N -0.563 5.563 22 Si 0.777 3.223 23 H -0.180 1.180 24 H -0.197 1.197 25 H -0.159 1.159 26 C -0.120 4.120 27 H 0.108 0.892 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.192 0.808 33 H 0.193 0.807 34 H 0.177 0.823 35 H 0.264 0.736 36 H 0.252 0.748 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.228 0.772 40 H 0.091 0.909 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.612 -33.517 -1.967 33.768 hybrid contribution -0.014 1.675 0.092 1.678 sum -3.626 -31.842 -1.876 32.102 Atomic orbital electron populations 1.21635 0.94540 1.02901 1.01465 1.22066 0.97563 0.92651 1.07324 1.23379 0.87735 0.92813 0.69347 1.90541 1.59463 1.49866 1.38342 1.20599 0.95847 0.93695 1.07465 1.21825 0.92677 0.99238 0.95832 1.21444 0.95997 0.96436 0.98246 1.21535 1.00297 0.91575 0.99594 1.17665 0.92496 0.83517 1.02193 1.42403 1.28396 1.05579 1.55929 1.15917 0.82741 0.80917 0.80078 1.90949 1.29416 1.82093 1.46599 1.44658 1.33955 1.04052 1.54817 1.20735 0.95785 0.83445 0.99218 1.20392 0.86378 0.86104 0.83746 1.90522 1.29324 1.86885 1.43128 1.41919 1.27845 1.05958 1.45950 1.19027 1.12175 0.83525 1.31268 0.91652 1.26049 1.02022 0.93791 0.98879 1.69773 1.42350 0.99294 1.44903 0.85464 0.77807 0.79870 0.79121 1.17990 1.19743 1.15886 1.21350 0.94984 0.97350 0.98331 0.89222 0.94080 0.93830 0.85356 0.85010 0.80818 0.80658 0.82333 0.73614 0.74809 0.88246 0.87719 0.77250 0.90869 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.16 -1.64 5.03 29.85 0.15 -1.49 16 3 C 0.39 8.42 7.12 28.04 0.20 8.62 16 4 O -0.50 -16.34 15.97 -2.95 -0.05 -16.39 16 5 C -0.17 -3.61 5.87 -20.17 -0.12 -3.73 16 6 C -0.08 -0.81 9.47 22.59 0.21 -0.60 16 7 C -0.10 -0.90 10.02 22.21 0.22 -0.67 16 8 C -0.11 -1.46 9.95 22.47 0.22 -1.23 16 9 C 0.14 3.04 6.27 38.10 0.24 3.28 16 10 N -0.67 -15.44 5.35 -317.29 -1.70 -17.14 16 11 C 0.70 21.88 8.30 179.05 1.49 23.37 16 12 O -0.61 -23.53 14.03 -3.99 -0.06 -23.59 16 13 N -0.72 -22.33 5.53 -482.29 -2.67 -25.00 16 14 C 0.14 4.62 6.15 85.63 0.53 5.15 16 15 C 0.45 19.59 7.85 87.66 0.69 20.28 16 16 O -0.61 -31.37 15.24 -3.07 -0.05 -31.41 16 17 N -0.58 -26.81 5.09 -306.99 -1.56 -28.37 16 18 C -0.33 -18.86 10.16 84.04 0.85 -18.01 16 19 H 0.07 4.37 7.39 -2.91 -0.02 4.35 16 20 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 21 N -0.92 -54.40 13.96 21.66 0.30 -54.10 16 22 Si 0.96 38.70 27.74 68.60 1.90 40.61 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.24 -8.26 6.52 99.48 0.65 -7.62 16 26 C -0.10 -2.76 8.20 22.71 0.19 -2.57 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.04 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 30 H 0.13 0.62 8.08 -2.39 -0.02 0.60 16 31 H 0.13 0.53 8.09 -2.39 -0.02 0.51 16 32 H 0.17 0.31 7.04 -2.91 -0.02 0.29 16 33 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.43 6.73 8.83 -92.70 -0.82 5.91 16 36 H 0.41 12.37 7.46 -92.71 -0.69 11.68 16 37 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.39 15.45 5.76 -92.71 -0.53 14.91 16 40 H 0.28 15.17 8.31 -92.71 -0.77 14.39 16 41 H 0.10 3.77 6.00 -2.91 -0.02 3.76 16 Total: -1.00 -86.28 356.44 1.13 -85.14 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.99 Total: 39.10 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 6.00 Total: 31.16 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -5.63 Total: -124.61 kcal Atomic # 8 Polarization: -71.24 SS G_CDS: -0.15 Total: -71.39 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.90 Total: 40.61 kcal Total: -86.28 1.13 -85.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350195105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.870 kcal (2) G-P(sol) polarization free energy of solvation -86.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds