Wall clock time and date at job start Tue Mar 31 2020 14:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21290 * 120.00592 * 2 1 4 4 N 1.34779 * 119.99663 * 180.02562 * 2 1 3 5 5 C 1.40030 * 120.00372 * 175.38221 * 4 2 1 6 6 C 1.38895 * 119.99911 * 215.09468 * 5 4 2 7 7 C 1.38007 * 120.00876 * 180.02562 * 6 5 4 8 8 C 1.38942 * 119.99228 * 0.02562 * 7 6 5 9 9 N 1.39836 * 120.00448 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99811 * 35.10987 * 9 8 7 11 11 O 1.21390 * 120.00210 * 355.38330 * 10 9 8 12 12 C 1.49334 * 119.99933 * 175.38205 * 10 9 8 13 13 O 1.21353 * 120.00200 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99933 * 179.97438 * 12 10 9 15 15 C 1.46501 * 120.00197 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.46519 * 35.00137 * 15 14 12 17 17 C 1.52998 * 109.47077 * 274.99775 * 15 14 12 18 18 C 1.50696 * 109.47157 * 154.99595 * 15 14 12 19 19 H 1.07997 * 120.00251 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00098 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00384 * 179.72790 * 20 18 15 22 22 Si 1.86797 * 119.99585 * 0.02562 * 20 18 15 23 23 H 1.48501 * 109.47174 * 269.72283 * 22 20 18 24 24 H 1.48501 * 109.47368 * 29.72676 * 22 20 18 25 25 H 1.48506 * 109.47037 * 149.72393 * 22 20 18 26 26 C 1.38941 * 119.99293 * 0.25081 * 8 7 6 27 27 C 1.38013 * 119.99164 * 359.49444 * 26 8 7 28 28 H 1.09003 * 109.47061 * 270.00738 * 1 2 3 29 29 H 1.09006 * 109.46928 * 29.99720 * 1 2 3 30 30 H 1.08991 * 109.47284 * 149.99784 * 1 2 3 31 31 H 0.97008 * 120.00293 * 355.37709 * 4 2 1 32 32 H 1.07998 * 119.99477 * 0.02562 * 6 5 4 33 33 H 1.08003 * 120.00833 * 179.97438 * 7 6 5 34 34 H 0.96995 * 120.00263 * 215.10334 * 9 8 7 35 35 H 0.97003 * 119.99802 * 0.02562 * 14 12 10 36 36 H 1.09002 * 109.47244 * 179.97438 * 17 15 14 37 37 H 1.08991 * 109.47479 * 300.00165 * 17 15 14 38 38 H 1.09002 * 109.46961 * 59.99738 * 17 15 14 39 39 H 0.96991 * 120.00360 * 180.27705 * 21 20 18 40 40 H 1.08000 * 120.00715 * 179.72010 * 26 8 7 41 41 H 1.07998 * 119.99831 * 180.25338 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5777 -1.1694 -0.0982 6 6 4.2235 -2.1813 -0.7967 7 6 5.6002 -2.1839 -0.8926 8 6 6.3403 -1.1743 -0.2898 9 7 7.7354 -1.1769 -0.3863 10 6 8.3321 -1.6164 -1.5121 11 8 7.6637 -2.0877 -2.4091 12 6 9.8156 -1.5235 -1.6559 13 8 10.4838 -1.0518 -0.7594 14 7 10.4123 -1.9634 -2.7814 15 6 11.8677 -1.8728 -2.9224 16 1 12.3376 -2.0387 -1.9529 17 6 12.2444 -0.4835 -3.4408 18 6 12.3441 -2.9188 -3.8970 19 1 11.6338 -3.5843 -4.3649 20 6 13.6867 -3.0257 -4.1920 21 7 14.1032 -3.9420 -5.0385 22 14 14.9152 -1.8742 -3.3831 23 1 15.0867 -0.6629 -4.2249 24 1 14.4142 -1.4785 -2.0424 25 1 16.2214 -2.5659 -3.2391 26 6 5.6945 -0.1652 0.4138 27 6 4.3174 -0.1602 0.5050 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6981 -2.0060 0.0668 32 1 3.6482 -2.9663 -1.2649 33 1 6.1024 -2.9710 -1.4355 34 1 8.2736 -0.8624 0.3568 35 1 9.8781 -2.3401 -3.4982 36 1 13.3273 -0.4159 -3.5452 37 1 11.7745 -0.3176 -4.4101 38 1 11.8998 0.2731 -2.7358 39 1 15.0481 -4.0198 -5.2430 40 1 6.2699 0.6173 0.8863 41 1 3.8151 0.6264 1.0484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438884956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:39 Heat of formation + Delta-G solvation = -64.939264 kcal Electronic energy + Delta-G solvation = -25423.485620 eV Core-core repulsion = 21497.065006 eV Total energy + Delta-G solvation = -3926.420614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07709 -40.45882 -38.97187 -37.90727 -35.81712 -35.21149 -33.95961 -32.44149 -31.18034 -30.81743 -30.10430 -28.34036 -25.37836 -24.87498 -23.48343 -22.44375 -21.23958 -20.57644 -19.79336 -18.80551 -18.12653 -17.55024 -17.22434 -16.67845 -15.94939 -15.87786 -15.60800 -15.36193 -14.82030 -14.61732 -14.36942 -14.06170 -13.82331 -13.51724 -13.35122 -13.27584 -13.15195 -12.95675 -12.82885 -12.59053 -12.27933 -11.94547 -11.60680 -11.42613 -11.25166 -11.13189 -10.86368 -10.32394 -10.26096 -9.80697 -9.71203 -9.33344 -9.24445 -9.08373 -8.84502 -8.40038 -7.96682 -6.25495 -4.29542 0.86602 1.23311 1.71837 2.19014 2.53729 2.73045 3.19659 3.31876 3.34326 3.44041 3.66832 3.95874 4.26306 4.27042 4.63695 4.71438 4.82408 4.86333 4.90279 5.08121 5.12521 5.19127 5.30645 5.34330 5.55701 5.88579 6.07275 6.16130 6.20592 6.21825 6.25320 6.30200 6.43531 6.70263 6.80507 6.91129 6.98736 7.08664 7.13282 7.37038 7.69601 7.72369 8.01619 8.36093 8.48887 8.74581 9.32842 10.86402 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.038797 B = 0.002180 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.534526 B =12842.564956 C =13171.324334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.527 6.527 4 N -0.672 5.672 5 C 0.121 3.879 6 C -0.124 4.124 7 C -0.102 4.102 8 C 0.134 3.866 9 N -0.649 5.649 10 C 0.509 3.491 11 O -0.502 6.502 12 C 0.498 3.502 13 O -0.536 6.536 14 N -0.661 5.661 15 C 0.234 3.766 16 H 0.054 0.946 17 C -0.163 4.163 18 C -0.539 4.539 19 H 0.083 0.917 20 C 0.080 3.920 21 N -0.888 5.888 22 Si 0.885 3.115 23 H -0.275 1.275 24 H -0.262 1.262 25 H -0.293 1.293 26 C -0.124 4.124 27 C -0.101 4.101 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.411 0.589 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.423 0.577 35 H 0.409 0.591 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.269 0.731 40 H 0.132 0.868 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.672 4.721 12.075 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.402 6.402 4 N -0.318 5.318 5 C 0.027 3.973 6 C -0.144 4.144 7 C -0.122 4.122 8 C 0.039 3.961 9 N -0.296 5.296 10 C 0.292 3.708 11 O -0.376 6.376 12 C 0.276 3.724 13 O -0.415 6.415 14 N -0.310 5.310 15 C 0.132 3.868 16 H 0.072 0.928 17 C -0.221 4.221 18 C -0.577 4.577 19 H 0.101 0.899 20 C -0.124 4.124 21 N -0.525 5.525 22 Si 0.715 3.285 23 H -0.202 1.202 24 H -0.186 1.186 25 H -0.220 1.220 26 C -0.145 4.145 27 C -0.122 4.122 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.247 0.753 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.261 0.739 35 H 0.245 0.755 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.150 0.850 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.044 5.398 11.889 28.243 hybrid contribution 0.508 0.098 0.248 0.574 sum -24.536 5.496 12.137 27.920 Atomic orbital electron populations 1.21891 0.90726 1.05373 1.05082 1.21026 0.90892 0.83198 0.75231 1.90747 1.70398 1.31320 1.47773 1.43601 1.05252 1.09864 1.73111 1.17761 0.82417 0.97937 0.99208 1.20783 0.94377 0.99665 0.99606 1.21147 0.93093 0.98025 0.99953 1.17807 0.82387 0.95294 1.00566 1.43197 1.05066 1.63409 1.17966 1.20786 0.89933 0.78135 0.81976 1.90740 1.65573 1.41476 1.39770 1.19693 0.87009 0.81165 0.84503 1.90727 1.64979 1.45470 1.40306 1.46132 1.10504 1.57597 1.16738 1.19321 0.74959 0.93891 0.98654 0.92789 1.22468 1.00552 0.98288 1.00808 1.20989 0.94191 1.16748 1.25749 0.89861 1.24823 0.98011 0.95270 0.94339 1.69857 1.15991 1.33134 1.33473 0.86880 0.80393 0.80364 0.80884 1.20183 1.18634 1.21999 1.20863 0.94290 0.97327 1.01999 1.21016 0.92695 0.99030 0.99419 0.88515 0.88440 0.89861 0.75327 0.85253 0.83612 0.73908 0.75541 0.93031 0.92427 0.94353 0.92142 0.85029 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.51 4.04 7.78 -10.98 -0.09 3.96 16 3 O -0.53 -6.61 14.54 5.55 0.08 -6.53 16 4 N -0.67 -4.62 5.34 -9.82 -0.05 -4.67 16 5 C 0.12 1.21 6.30 -83.62 -0.53 0.68 16 6 C -0.12 -1.24 9.96 -39.42 -0.39 -1.63 16 7 C -0.10 -1.26 8.69 -39.41 -0.34 -1.60 16 8 C 0.13 1.69 6.30 -83.69 -0.53 1.16 16 9 N -0.65 -8.62 5.32 -10.27 -0.05 -8.67 16 10 C 0.51 8.24 7.73 -11.64 -0.09 8.15 16 11 O -0.50 -8.75 13.91 5.46 0.08 -8.67 16 12 C 0.50 9.35 7.85 -11.64 -0.09 9.26 16 13 O -0.54 -10.96 16.14 5.49 0.09 -10.87 16 14 N -0.66 -13.42 5.06 -55.41 -0.28 -13.70 16 15 C 0.23 5.49 2.15 -69.08 -0.15 5.34 16 16 H 0.05 1.35 6.63 -51.93 -0.34 1.01 16 17 C -0.16 -3.56 8.96 37.16 0.33 -3.23 16 18 C -0.54 -14.42 9.31 -34.44 -0.32 -14.75 16 19 H 0.08 2.37 7.98 -52.49 -0.42 1.95 16 20 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 21 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 22 Si 0.89 21.22 24.37 -169.99 -4.14 17.08 16 23 H -0.28 -6.39 6.88 56.52 0.39 -6.00 16 24 H -0.26 -6.15 6.52 56.52 0.37 -5.78 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C -0.12 -1.38 9.96 -39.40 -0.39 -1.77 16 27 C -0.10 -1.13 8.69 -39.42 -0.34 -1.47 16 28 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.41 1.31 8.82 -40.82 -0.36 0.95 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.15 1.96 6.22 -52.48 -0.33 1.63 16 34 H 0.42 4.90 8.30 -40.82 -0.34 4.56 16 35 H 0.41 7.87 8.01 -40.82 -0.33 7.55 16 36 H 0.05 1.15 3.28 -51.93 -0.17 0.98 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.14 1.62 6.22 -52.49 -0.33 1.30 16 LS Contribution 349.17 15.07 5.26 5.26 Total: -1.00 -33.93 349.17 -5.65 -39.59 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.75 Total: 10.40 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.65 Total: 6.01 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.39 Total: -52.27 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: 0.25 Total: -26.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.93 -5.65 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438884956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.354 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds