Wall clock time and date at job start Tue Mar 31 2020 12:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00280 * 2 1 4 4 N 1.46896 * 109.47321 * 125.00097 * 3 2 1 5 5 C 1.46907 * 110.99682 * 289.04010 * 4 3 2 6 6 C 1.50697 * 109.47288 * 160.70688 * 5 4 3 7 7 H 1.08004 * 119.99386 * 355.60177 * 6 5 4 8 8 C 1.37878 * 120.00394 * 175.60220 * 6 5 4 9 9 N 1.31507 * 120.00218 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99570 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46904 * 90.00268 * 10 8 6 12 12 H 1.48499 * 109.46823 * 209.99971 * 10 8 6 13 13 H 1.48502 * 109.47254 * 330.00108 * 10 8 6 14 14 C 1.37843 * 110.99905 * 165.09244 * 4 3 2 15 15 N 1.32643 * 120.91843 * 64.24331 * 14 4 3 16 16 C 1.32336 * 121.49458 * 179.97438 * 15 14 4 17 17 C 1.50696 * 118.51508 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47323 * 209.98175 * 17 16 15 19 19 F 1.39895 * 109.47307 * 329.98600 * 17 16 15 20 20 N 1.31201 * 122.97039 * 359.97438 * 16 15 14 21 21 C 1.34113 * 120.46367 * 0.02562 * 20 16 15 22 22 C 1.40149 * 121.98949 * 179.97438 * 21 20 16 23 23 C 1.36320 * 119.58428 * 179.97438 * 22 21 20 24 24 C 1.39213 * 121.02743 * 0.06344 * 23 22 21 25 25 C 1.36386 * 120.89756 * 359.95519 * 24 23 22 26 26 C 1.39928 * 119.50491 * 0.02562 * 25 24 23 27 27 H 1.08004 * 120.00110 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99776 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99776 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46968 * 4.99339 * 3 2 1 31 31 H 1.09007 * 109.46727 * 245.00022 * 3 2 1 32 32 H 1.09004 * 109.47035 * 280.70985 * 5 4 3 33 33 H 1.08998 * 109.47209 * 40.70754 * 5 4 3 34 34 H 0.97003 * 120.00219 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46539 * 89.98041 * 17 16 15 36 36 H 1.08000 * 120.21455 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.48673 * 180.02562 * 23 22 21 38 38 H 1.07995 * 119.55052 * 179.97438 * 24 23 22 39 39 H 1.08006 * 120.24093 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2741 1.4645 2.4068 6 6 3.1651 1.0222 3.5388 7 1 4.1413 0.6106 3.3283 8 6 2.7344 1.1429 4.8429 9 7 3.5122 0.7574 5.8307 10 14 1.0463 1.8555 5.2067 11 1 0.0434 0.7608 5.2384 12 1 1.0720 2.5416 6.5235 13 1 0.6818 2.8304 4.1475 14 6 3.9252 2.3395 0.9865 15 7 3.5541 3.6130 0.9799 16 6 4.4362 4.5894 0.8391 17 6 3.9404 6.0125 0.8407 18 9 4.7818 6.8003 0.0480 19 9 2.6405 6.0541 0.3252 20 7 5.7228 4.3745 0.6982 21 6 6.2064 3.1237 0.6908 22 6 7.5743 2.8574 0.5420 23 6 8.0126 1.5666 0.5419 24 6 7.1220 0.5064 0.6862 25 6 5.7846 0.7302 0.8328 26 6 5.3021 2.0436 0.8375 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4024 -0.9315 32 1 1.9878 2.5057 2.5553 33 1 1.3799 0.8416 2.3836 34 1 3.2090 0.8420 6.7483 35 1 3.9390 6.3955 1.8612 36 1 8.2769 3.6697 0.4280 37 1 9.0671 1.3633 0.4275 38 1 7.4952 -0.5070 0.6824 39 1 5.1032 -0.1003 0.9444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488484370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:27 Heat of formation + Delta-G solvation = 10.923393 kcal Electronic energy + Delta-G solvation = -26940.893039 eV Core-core repulsion = 22906.674561 eV Total energy + Delta-G solvation = -4034.218478 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.88936 -46.89902 -41.25801 -38.07716 -37.29933 -33.98140 -32.94283 -32.09164 -31.27691 -30.32461 -28.21510 -27.18715 -25.49334 -23.80117 -22.78502 -22.25349 -20.73490 -19.58080 -18.60121 -18.04085 -17.50807 -16.95310 -16.88753 -16.60340 -15.83903 -15.62499 -14.99985 -14.55435 -14.46168 -14.19477 -13.82627 -13.72034 -13.59281 -13.31612 -13.22677 -12.85965 -12.47173 -12.38319 -12.30128 -12.09105 -11.73997 -11.62400 -11.33860 -11.02671 -10.89918 -10.64230 -10.54929 -10.47375 -10.08449 -9.53996 -9.20703 -9.12471 -9.06458 -8.68420 -8.16959 -8.07144 -6.17472 -4.16732 0.35742 0.85210 2.05818 2.46548 3.02374 3.21185 3.25256 3.29150 3.32659 3.85209 4.06987 4.14905 4.23175 4.32137 4.75724 4.90695 4.96103 5.02364 5.13270 5.14278 5.18643 5.26837 5.34222 5.43871 5.51643 5.67594 5.88410 5.90244 6.07358 6.11726 6.27663 6.39921 6.54939 6.58093 6.76933 6.82744 6.85859 6.91240 7.19773 7.30596 7.51052 7.71746 8.17181 8.42639 8.88301 9.42413 10.94898 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.005911 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.521911 B = 4736.161316 C = 5317.730271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C 0.085 3.915 4 N -0.481 5.481 5 C 0.163 3.837 6 C -0.519 4.519 7 H 0.081 0.919 8 C 0.075 3.925 9 N -0.893 5.893 10 Si 0.867 3.133 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.263 1.263 14 C 0.445 3.555 15 N -0.546 5.546 16 C 0.266 3.734 17 C 0.350 3.650 18 F -0.186 7.186 19 F -0.184 7.184 20 N -0.495 5.495 21 C 0.162 3.838 22 C -0.112 4.112 23 C -0.075 4.075 24 C -0.136 4.136 25 C -0.034 4.034 26 C -0.127 4.127 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.017 0.983 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 2.537 -12.229 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.148 4.148 3 C -0.041 4.041 4 N -0.204 5.204 5 C 0.039 3.961 6 C -0.557 4.557 7 H 0.099 0.901 8 C -0.128 4.128 9 N -0.531 5.531 10 Si 0.694 3.306 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.188 1.188 14 C 0.196 3.804 15 N -0.264 5.264 16 C -0.008 4.008 17 C 0.294 3.706 18 F -0.167 7.167 19 F -0.165 7.165 20 N -0.210 5.210 21 C 0.036 3.964 22 C -0.131 4.131 23 C -0.096 4.096 24 C -0.155 4.155 25 C -0.054 4.054 26 C -0.133 4.133 27 H 0.117 0.883 28 H 0.111 0.889 29 H 0.134 0.866 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.305 3.122 -12.056 12.885 hybrid contribution -1.071 0.210 0.533 1.214 sum 2.235 3.332 -11.523 12.202 Atomic orbital electron populations 1.23808 0.95888 1.01688 1.01893 1.22772 0.95459 0.98178 0.98419 1.21237 0.94212 0.95863 0.92805 1.59985 1.17055 1.38249 1.05110 1.20466 0.94403 0.96976 0.84287 1.20959 1.03863 1.42143 0.88705 0.90081 1.24821 0.97044 0.94848 0.96062 1.69874 1.36644 1.47242 0.99362 0.86967 0.85189 0.80176 0.78290 1.19827 1.20986 1.18799 1.20247 0.91089 0.86461 0.82572 1.68114 1.39791 1.01276 1.17220 1.23000 0.86598 0.95521 0.95641 1.19697 0.72811 0.84569 0.93492 1.93021 1.71458 1.74916 1.77296 1.93030 1.37543 1.96706 1.89190 1.68311 1.14304 1.22922 1.15439 1.18809 0.94546 0.87211 0.95881 1.20597 0.92595 0.97515 1.02386 1.21012 1.00139 0.92203 0.96287 1.21033 0.93339 0.99584 1.01496 1.21103 0.95884 0.95778 0.92623 1.19286 0.93723 0.96067 1.04261 0.88308 0.88858 0.86570 0.92917 0.90890 0.96560 0.94226 0.92483 0.84886 0.84505 0.85115 0.85148 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.61 14.32 29.01 0.42 -2.19 16 2 C -0.13 -1.91 8.70 -36.03 -0.31 -2.23 16 3 C 0.09 1.42 5.23 -4.98 -0.03 1.39 16 4 N -0.48 -9.59 3.64 -175.40 -0.64 -10.22 16 5 C 0.16 3.80 3.64 -4.97 -0.02 3.78 16 6 C -0.52 -14.15 9.50 -34.44 -0.33 -14.47 16 7 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 8 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 10 Si 0.87 21.08 27.56 -169.99 -4.68 16.39 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.26 -6.28 6.42 56.52 0.36 -5.91 16 14 C 0.45 9.03 4.87 -154.98 -0.75 8.27 16 15 N -0.55 -11.14 9.12 -9.70 -0.09 -11.23 16 16 C 0.27 4.98 7.38 -157.23 -1.16 3.81 16 17 C 0.35 5.39 5.78 36.00 0.21 5.60 16 18 F -0.19 -2.84 17.01 2.25 0.04 -2.81 16 19 F -0.18 -2.99 17.01 2.25 0.04 -2.96 16 20 N -0.49 -9.17 9.97 -8.82 -0.09 -9.26 16 21 C 0.16 2.91 6.61 -84.86 -0.56 2.35 16 22 C -0.11 -1.60 10.01 -39.56 -0.40 -2.00 16 23 C -0.08 -0.91 9.95 -39.91 -0.40 -1.31 16 24 C -0.14 -1.79 9.96 -39.89 -0.40 -2.19 16 25 C -0.03 -0.55 9.58 -39.62 -0.38 -0.93 16 26 C -0.13 -2.39 5.75 -106.68 -0.61 -3.00 16 27 H 0.10 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.09 1.22 7.84 -52.49 -0.41 0.81 16 29 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.05 0.91 7.72 -51.93 -0.40 0.51 16 31 H 0.07 1.11 7.98 -51.92 -0.41 0.70 16 32 H 0.02 0.41 6.21 -51.93 -0.32 0.09 16 33 H 0.04 0.91 6.73 -51.93 -0.35 0.56 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.15 2.43 7.66 -52.48 -0.40 2.03 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -31.83 344.58 -8.71 -40.54 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.43 Total: 1.30 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -4.82 Total: -1.08 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.04 Total: -56.58 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.08 Total: -5.76 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.68 Total: 16.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.83 -8.71 -40.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488484370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.463 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds