Wall clock time and date at job start Tue Mar 31 2020 12:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00280 * 2 1 4 4 N 1.46896 * 109.47321 * 125.00097 * 3 2 1 5 5 C 1.46907 * 110.99682 * 289.04010 * 4 3 2 6 6 C 1.50697 * 109.47288 * 160.70688 * 5 4 3 7 7 H 1.08004 * 119.99386 * 355.60177 * 6 5 4 8 8 C 1.37878 * 120.00394 * 175.60220 * 6 5 4 9 9 N 1.31507 * 120.00218 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99570 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46904 * 90.00268 * 10 8 6 12 12 H 1.48499 * 109.46823 * 209.99971 * 10 8 6 13 13 H 1.48502 * 109.47254 * 330.00108 * 10 8 6 14 14 C 1.37843 * 110.99905 * 165.09244 * 4 3 2 15 15 N 1.32643 * 120.91843 * 64.24331 * 14 4 3 16 16 C 1.32336 * 121.49458 * 179.97438 * 15 14 4 17 17 C 1.50696 * 118.51508 * 179.97438 * 16 15 14 18 18 F 1.39895 * 109.47323 * 209.98175 * 17 16 15 19 19 F 1.39895 * 109.47307 * 329.98600 * 17 16 15 20 20 N 1.31201 * 122.97039 * 359.97438 * 16 15 14 21 21 C 1.34113 * 120.46367 * 0.02562 * 20 16 15 22 22 C 1.40149 * 121.98949 * 179.97438 * 21 20 16 23 23 C 1.36320 * 119.58428 * 179.97438 * 22 21 20 24 24 C 1.39213 * 121.02743 * 0.06344 * 23 22 21 25 25 C 1.36386 * 120.89756 * 359.95519 * 24 23 22 26 26 C 1.39928 * 119.50491 * 0.02562 * 25 24 23 27 27 H 1.08004 * 120.00110 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99776 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99776 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.46968 * 4.99339 * 3 2 1 31 31 H 1.09007 * 109.46727 * 245.00022 * 3 2 1 32 32 H 1.09004 * 109.47035 * 280.70985 * 5 4 3 33 33 H 1.08998 * 109.47209 * 40.70754 * 5 4 3 34 34 H 0.97003 * 120.00219 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.46539 * 89.98041 * 17 16 15 36 36 H 1.08000 * 120.21455 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.48673 * 180.02562 * 23 22 21 38 38 H 1.07995 * 119.55052 * 179.97438 * 24 23 22 39 39 H 1.08006 * 120.24093 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2741 1.4645 2.4068 6 6 3.1651 1.0222 3.5388 7 1 4.1413 0.6106 3.3283 8 6 2.7344 1.1429 4.8429 9 7 3.5122 0.7574 5.8307 10 14 1.0463 1.8555 5.2067 11 1 0.0434 0.7608 5.2384 12 1 1.0720 2.5416 6.5235 13 1 0.6818 2.8304 4.1475 14 6 3.9252 2.3395 0.9865 15 7 3.5541 3.6130 0.9799 16 6 4.4362 4.5894 0.8391 17 6 3.9404 6.0125 0.8407 18 9 4.7818 6.8003 0.0480 19 9 2.6405 6.0541 0.3252 20 7 5.7228 4.3745 0.6982 21 6 6.2064 3.1237 0.6908 22 6 7.5743 2.8574 0.5420 23 6 8.0126 1.5666 0.5419 24 6 7.1220 0.5064 0.6862 25 6 5.7846 0.7302 0.8328 26 6 5.3021 2.0436 0.8375 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4024 -0.9315 32 1 1.9878 2.5057 2.5553 33 1 1.3799 0.8416 2.3836 34 1 3.2090 0.8420 6.7483 35 1 3.9390 6.3955 1.8612 36 1 8.2769 3.6697 0.4280 37 1 9.0671 1.3633 0.4275 38 1 7.4952 -0.5070 0.6824 39 1 5.1032 -0.1003 0.9444 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488484370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:26 Heat of formation + Delta-G solvation = -7.459880 kcal Electronic energy + Delta-G solvation = -26941.690198 eV Core-core repulsion = 22906.674561 eV Total energy + Delta-G solvation = -4035.015637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.12408 -48.13648 -42.59710 -39.45988 -38.59316 -35.23209 -34.93189 -33.52267 -32.57594 -31.60324 -30.04318 -28.41187 -26.82762 -25.32524 -24.11546 -23.74653 -22.19681 -20.78646 -19.86394 -19.44816 -18.87665 -18.70700 -18.22715 -17.84439 -17.29971 -17.07289 -16.31773 -16.06995 -15.81836 -15.57390 -15.12386 -15.07391 -14.95579 -14.71975 -14.46969 -14.38326 -14.10764 -13.95817 -13.54772 -13.31304 -13.18967 -12.87300 -12.75644 -12.53660 -12.45354 -12.15639 -12.03172 -11.86393 -11.85145 -11.59689 -10.84892 -10.55508 -10.34013 -10.27316 -9.71950 -9.35530 -8.33882 -6.37133 -0.96146 -0.42827 0.78595 1.28844 1.30497 1.32865 1.41153 1.77920 1.99783 2.28245 2.47182 2.83316 2.90043 2.93223 3.00998 3.50174 3.65680 3.74427 3.87688 3.91305 4.02763 4.06846 4.16001 4.23919 4.35396 4.45052 4.59993 4.75261 4.75722 4.87733 4.96898 5.05630 5.15003 5.22706 5.38365 5.40548 5.56280 5.69684 5.70993 5.89769 5.91017 6.13778 6.35212 6.67390 6.77522 7.25557 8.81679 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.008997 B = 0.005911 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.521911 B = 4736.161316 C = 5317.730271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.089 3.911 4 N -0.480 5.480 5 C 0.179 3.821 6 C -0.516 4.516 7 H 0.046 0.954 8 C 0.020 3.980 9 N -0.938 5.938 10 Si 0.929 3.071 11 H -0.257 1.257 12 H -0.282 1.282 13 H -0.258 1.258 14 C 0.418 3.582 15 N -0.567 5.567 16 C 0.242 3.758 17 C 0.354 3.646 18 F -0.185 7.185 19 F -0.190 7.190 20 N -0.497 5.497 21 C 0.135 3.865 22 C -0.117 4.117 23 C -0.057 4.057 24 C -0.116 4.116 25 C -0.063 4.063 26 C -0.147 4.147 27 H 0.122 0.878 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.000 1.000 33 H 0.047 0.953 34 H 0.267 0.733 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.167 0.833 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 2.205 -13.081 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C -0.037 4.037 4 N -0.203 5.203 5 C 0.054 3.946 6 C -0.554 4.554 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.578 5.578 10 Si 0.753 3.247 11 H -0.181 1.181 12 H -0.208 1.208 13 H -0.182 1.182 14 C 0.169 3.831 15 N -0.285 5.285 16 C -0.032 4.032 17 C 0.299 3.701 18 F -0.166 7.166 19 F -0.172 7.172 20 N -0.212 5.212 21 C 0.008 3.992 22 C -0.136 4.136 23 C -0.078 4.078 24 C -0.134 4.134 25 C -0.084 4.084 26 C -0.153 4.153 27 H 0.140 0.860 28 H 0.114 0.886 29 H 0.140 0.860 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.018 0.982 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.183 0.817 36 H 0.177 0.823 37 H 0.199 0.801 38 H 0.185 0.815 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.840 2.791 -12.941 13.784 hybrid contribution -1.042 0.227 0.699 1.275 sum 2.798 3.018 -12.242 12.915 Atomic orbital electron populations 1.24053 0.95384 1.02932 0.99262 1.22747 0.96021 0.97368 1.00777 1.21282 0.93723 0.96738 0.91961 1.59879 1.17218 1.38592 1.04632 1.20096 0.93972 0.95594 0.84969 1.21134 1.02996 1.41138 0.90158 0.93563 1.25634 1.00948 0.95374 0.95923 1.70009 1.38792 1.49199 0.99832 0.85974 0.80769 0.79907 0.78050 1.18122 1.20789 1.18176 1.20482 0.91901 0.86654 0.84029 1.68057 1.40655 1.01728 1.18098 1.23558 0.86790 0.96539 0.96287 1.19940 0.72221 0.83195 0.94785 1.93014 1.71467 1.74619 1.77544 1.93009 1.38066 1.96638 1.89443 1.68356 1.14219 1.23408 1.15229 1.19360 0.96128 0.86853 0.96824 1.20998 0.91219 0.99434 1.01954 1.21568 1.02330 0.90707 0.93192 1.21532 0.91962 1.01892 0.98018 1.21168 0.97570 0.94595 0.95061 1.19526 0.93330 0.97479 1.04982 0.85997 0.88610 0.85998 0.93856 0.90103 0.98229 0.93469 0.92379 0.81711 0.82291 0.80140 0.81541 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.47 14.32 67.78 0.97 -3.50 16 2 C -0.15 -4.36 8.70 25.64 0.22 -4.13 16 3 C 0.09 3.00 5.23 85.56 0.45 3.44 16 4 N -0.48 -19.73 3.64 -708.86 -2.58 -22.31 16 5 C 0.18 8.52 3.64 85.55 0.31 8.83 16 6 C -0.52 -29.00 9.50 25.60 0.24 -28.76 16 7 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 8 C 0.02 1.13 5.47 84.66 0.46 1.60 16 9 N -0.94 -57.31 13.96 21.45 0.30 -57.01 16 10 Si 0.93 43.71 27.56 68.60 1.89 45.60 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 13 H -0.26 -11.78 6.42 99.48 0.64 -11.14 16 14 C 0.42 17.56 4.87 134.00 0.65 18.21 16 15 N -0.57 -23.88 9.12 -184.61 -1.68 -25.56 16 16 C 0.24 9.22 7.38 138.76 1.02 10.24 16 17 C 0.35 10.88 5.78 71.23 0.41 11.29 16 18 F -0.19 -5.60 17.01 44.97 0.76 -4.83 16 19 F -0.19 -6.24 17.01 44.97 0.77 -5.47 16 20 N -0.50 -18.57 9.97 -181.80 -1.81 -20.38 16 21 C 0.14 4.83 6.61 40.10 0.27 5.10 16 22 C -0.12 -3.10 10.01 22.29 0.22 -2.88 16 23 C -0.06 -1.18 9.95 22.06 0.22 -0.96 16 24 C -0.12 -2.76 9.96 22.07 0.22 -2.54 16 25 C -0.06 -2.08 9.58 22.25 0.21 -1.86 16 26 C -0.15 -5.66 5.75 -21.20 -0.12 -5.78 16 27 H 0.12 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.10 2.35 7.84 -2.91 -0.02 2.33 16 29 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.04 1.53 7.72 -2.38 -0.02 1.51 16 31 H 0.08 2.54 7.98 -2.38 -0.02 2.52 16 32 H 0.00 -0.01 6.21 -2.39 -0.01 -0.02 16 33 H 0.05 2.16 6.73 -2.39 -0.02 2.15 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.17 3.96 8.14 -2.39 -0.02 3.94 16 36 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.14 4.70 7.66 -2.91 -0.02 4.68 16 Total: -1.00 -71.97 344.58 4.41 -67.55 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.01 Total: 14.11 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.76 Total: 8.29 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -5.78 Total: -125.26 kcal Atomic # 9 Polarization: -11.84 SS G_CDS: 1.53 Total: -10.31 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.89 Total: 45.60 kcal Total: -71.97 4.41 -67.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488484370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.094 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds