Wall clock time and date at job start Tue Mar 31 2020 14:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47237 * 2 1 4 4 C 1.50706 * 109.47232 * 120.00055 * 2 1 3 5 5 H 1.08002 * 120.00011 * 120.00036 * 4 2 1 6 6 C 1.37874 * 119.99990 * 299.99752 * 4 2 1 7 7 N 1.31506 * 120.00319 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99878 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47008 * 89.99693 * 8 6 4 10 10 H 1.48494 * 109.47295 * 209.99624 * 8 6 4 11 11 H 1.48492 * 109.47290 * 330.00097 * 8 6 4 12 12 N 1.46497 * 109.47081 * 240.00046 * 2 1 3 13 13 C 1.34774 * 120.00492 * 84.99931 * 12 2 1 14 14 O 1.21288 * 119.99527 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00512 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.46942 * 185.90145 * 15 13 12 17 17 H 1.08993 * 109.47734 * 305.98877 * 16 15 13 18 18 C 1.50703 * 109.46930 * 65.98842 * 16 15 13 19 19 N 1.30498 * 125.65301 * 59.95573 * 18 16 15 20 20 C 1.34120 * 109.25874 * 180.02562 * 19 18 16 21 21 C 1.34667 * 108.02050 * 359.97438 * 20 19 18 22 22 N 1.35048 * 125.64831 * 239.99553 * 18 16 15 23 23 C 1.46499 * 126.39652 * 359.70082 * 22 18 16 24 24 C 1.52999 * 109.47015 * 185.98212 * 16 15 13 25 25 F 1.39903 * 109.47156 * 304.86799 * 24 16 15 26 26 F 1.39908 * 109.46757 * 64.86426 * 24 16 15 27 27 F 1.39900 * 109.47311 * 184.86501 * 24 16 15 28 28 H 1.09005 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47274 * 299.99879 * 1 2 3 30 30 H 1.08996 * 109.47268 * 60.00400 * 1 2 3 31 31 H 0.97000 * 120.00629 * 180.02562 * 7 6 4 32 32 H 0.97008 * 119.99964 * 265.00130 * 12 2 1 33 33 H 1.08999 * 109.46477 * 65.90534 * 15 13 12 34 34 H 1.09000 * 109.46906 * 305.90755 * 15 13 12 35 35 H 1.08001 * 125.99315 * 179.97438 * 20 19 18 36 36 H 1.08011 * 126.59058 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.46603 * 89.99978 * 23 22 18 38 38 H 1.08994 * 109.46724 * 209.99904 * 23 22 18 39 39 H 1.09001 * 109.47340 * 330.00213 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9951 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7286 -3.5875 16 6 2.8411 0.2839 -4.7185 17 1 1.9158 0.8400 -4.8687 18 6 3.9481 1.2397 -4.3551 19 7 5.1862 0.9105 -4.1064 20 6 5.8887 2.0162 -3.8189 21 6 5.0545 3.0708 -3.8929 22 7 3.8232 2.5788 -4.2323 23 6 2.5998 3.3596 -4.4321 24 6 3.2075 -0.4545 -6.0074 25 9 4.3325 -1.2551 -5.7825 26 9 2.1343 -1.2592 -6.4050 27 9 3.4906 0.4757 -7.0134 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.9035 -0.5278 4.4375 32 1 2.2489 -1.6318 -1.1526 33 1 1.9246 -1.4826 -3.8936 34 1 3.6024 -1.2097 -3.3654 35 1 6.9393 2.0542 -3.5715 36 1 5.3083 4.1060 -3.7177 37 1 2.0619 3.4401 -3.4875 38 1 2.8593 4.3564 -4.7886 39 1 1.9681 2.8632 -5.1688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553427279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:01 Heat of formation + Delta-G solvation = -125.401397 kcal Electronic energy + Delta-G solvation = -28234.354410 eV Core-core repulsion = 23763.455220 eV Total energy + Delta-G solvation = -4470.899190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.18334 -47.72426 -47.56502 -42.09988 -39.25762 -35.42128 -34.31919 -33.96689 -32.44827 -30.29209 -28.78476 -27.09272 -26.81032 -25.22624 -23.40909 -21.57093 -21.21417 -20.04582 -19.61048 -18.60541 -18.49421 -17.71346 -17.11375 -16.81505 -15.83517 -15.72341 -15.49296 -15.23616 -14.62520 -14.38980 -14.31748 -14.27885 -14.06197 -13.77022 -13.73386 -13.59437 -13.25137 -13.13140 -12.93876 -12.89299 -12.68828 -12.44612 -12.25980 -12.08778 -11.72123 -11.61328 -11.24756 -10.87277 -10.24430 -9.94780 -9.79173 -9.51615 -9.30228 -9.28436 -8.80443 -8.39864 -8.23198 -6.24199 -4.26930 1.94830 2.48894 2.84934 3.09778 3.16875 3.18442 3.30545 3.33163 3.46401 3.76718 3.87072 4.11818 4.26992 4.37605 4.58594 4.69920 4.73296 4.96031 5.10119 5.15848 5.29285 5.37847 5.47232 5.54771 5.64777 5.76066 6.23937 6.29542 6.30422 6.49145 6.77180 6.79096 7.11568 7.12279 7.21262 7.45973 8.07431 8.08932 8.45944 8.70706 8.82568 9.35918 10.88113 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.004144 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.881033 B = 6755.437409 C = 7300.997709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.047 0.953 4 C -0.536 4.536 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.696 5.696 13 C 0.515 3.485 14 O -0.559 6.559 15 C -0.141 4.141 16 C -0.025 4.025 17 H 0.131 0.869 18 C 0.204 3.796 19 N -0.472 5.472 20 C -0.026 4.026 21 C -0.048 4.048 22 N -0.431 5.431 23 C 0.073 3.927 24 C 0.464 3.536 25 F -0.164 7.164 26 F -0.181 7.181 27 F -0.182 7.182 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 5.060 -19.369 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.136 3.864 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.099 0.901 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.343 5.343 13 C 0.299 3.701 14 O -0.439 6.439 15 C -0.182 4.182 16 C -0.047 4.047 17 H 0.148 0.852 18 C -0.057 4.057 19 N -0.191 5.191 20 C -0.175 4.175 21 C -0.182 4.182 22 N -0.111 5.111 23 C -0.069 4.069 24 C 0.409 3.591 25 F -0.145 7.145 26 F -0.162 7.162 27 F -0.163 7.163 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.231 0.769 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.189 0.811 36 H 0.192 0.808 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.837 5.176 -19.229 19.931 hybrid contribution -0.762 1.095 0.249 1.357 sum 0.075 6.271 -18.980 19.990 Atomic orbital electron populations 1.22447 0.99266 1.00910 0.99228 1.19084 0.90051 0.94559 0.82743 0.93538 1.21043 1.33306 1.14498 0.88511 0.90123 1.24828 0.95503 0.96648 0.95532 1.69861 1.44785 1.40080 0.98055 0.86868 0.80536 0.83619 0.77354 1.20310 1.22146 1.18895 1.46131 1.64593 1.13970 1.09580 1.19965 0.78215 0.87310 0.84576 1.90585 1.52074 1.15893 1.85337 1.21738 1.05610 0.97896 0.92978 1.20360 0.97619 0.95041 0.91658 0.85152 1.21761 0.93721 0.82200 1.08066 1.70171 1.01511 1.29910 1.17535 1.22243 1.00208 0.87809 1.07275 1.22710 0.84582 1.00903 1.10035 1.44977 1.09470 1.07043 1.49644 1.22088 0.85032 0.95528 1.04269 1.20156 0.75121 0.78016 0.85848 1.93250 1.52304 1.74436 1.94490 1.93194 1.56082 1.74901 1.92031 1.93180 1.93694 1.65754 1.63693 0.92747 0.93484 0.94619 0.92250 0.76902 0.87172 0.86573 0.81148 0.80784 0.88839 0.89966 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.96 37.15 0.33 -3.10 16 2 C 0.24 5.53 2.15 -69.08 -0.15 5.38 16 3 H 0.05 1.20 6.64 -51.93 -0.34 0.85 16 4 C -0.54 -14.32 9.31 -34.44 -0.32 -14.64 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 8 Si 0.89 21.45 24.37 -169.99 -4.14 17.31 16 9 H -0.28 -6.45 6.87 56.52 0.39 -6.07 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.70 -13.23 5.07 -54.93 -0.28 -13.51 16 13 C 0.51 8.92 7.48 -10.99 -0.08 8.84 16 14 O -0.56 -10.80 13.53 5.55 0.08 -10.72 16 15 C -0.14 -1.87 4.87 -27.88 -0.14 -2.00 16 16 C -0.03 -0.32 1.83 -91.77 -0.17 -0.49 16 17 H 0.13 1.50 6.42 -51.93 -0.33 1.17 16 18 C 0.20 3.04 4.82 -155.41 -0.75 2.29 16 19 N -0.47 -7.68 10.74 -10.82 -0.12 -7.80 16 20 C -0.03 -0.37 11.87 -17.82 -0.21 -0.58 16 21 C -0.05 -0.61 11.58 -16.56 -0.19 -0.80 16 22 N -0.43 -5.80 3.08 -121.28 -0.37 -6.17 16 23 C 0.07 0.75 10.29 59.85 0.62 1.37 16 24 C 0.46 5.71 2.69 37.16 0.10 5.81 16 25 F -0.16 -2.24 16.13 2.25 0.04 -2.20 16 26 F -0.18 -2.04 16.89 2.25 0.04 -2.00 16 27 F -0.18 -2.32 16.90 2.25 0.04 -2.28 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.40 6.73 8.54 -40.82 -0.35 6.38 16 33 H 0.11 1.14 7.79 -51.93 -0.40 0.73 16 34 H 0.12 1.57 7.87 -51.93 -0.41 1.16 16 35 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 37 H 0.09 1.13 7.46 -51.93 -0.39 0.74 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.71 7.06 -51.93 -0.37 0.35 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -32.93 334.35 -4.44 -37.37 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.48 Total: 6.27 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.06 Total: 4.16 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.01 Total: -52.96 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.11 Total: -6.48 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.31 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.93 -4.44 -37.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553427279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.028 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds