Wall clock time and date at job start Tue Mar 31 2020 14:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47237 * 2 1 4 4 C 1.50706 * 109.47232 * 120.00055 * 2 1 3 5 5 H 1.08002 * 120.00011 * 120.00036 * 4 2 1 6 6 C 1.37874 * 119.99990 * 299.99752 * 4 2 1 7 7 N 1.31506 * 120.00319 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99878 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47008 * 89.99693 * 8 6 4 10 10 H 1.48494 * 109.47295 * 209.99624 * 8 6 4 11 11 H 1.48492 * 109.47290 * 330.00097 * 8 6 4 12 12 N 1.46497 * 109.47081 * 240.00046 * 2 1 3 13 13 C 1.34774 * 120.00492 * 84.99931 * 12 2 1 14 14 O 1.21288 * 119.99527 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00512 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.46942 * 185.90145 * 15 13 12 17 17 H 1.08993 * 109.47734 * 305.98877 * 16 15 13 18 18 C 1.50703 * 109.46930 * 65.98842 * 16 15 13 19 19 N 1.30498 * 125.65301 * 59.95573 * 18 16 15 20 20 C 1.34120 * 109.25874 * 180.02562 * 19 18 16 21 21 C 1.34667 * 108.02050 * 359.97438 * 20 19 18 22 22 N 1.35048 * 125.64831 * 239.99553 * 18 16 15 23 23 C 1.46499 * 126.39652 * 359.70082 * 22 18 16 24 24 C 1.52999 * 109.47015 * 185.98212 * 16 15 13 25 25 F 1.39903 * 109.47156 * 304.86799 * 24 16 15 26 26 F 1.39908 * 109.46757 * 64.86426 * 24 16 15 27 27 F 1.39900 * 109.47311 * 184.86501 * 24 16 15 28 28 H 1.09005 * 109.47271 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47274 * 299.99879 * 1 2 3 30 30 H 1.08996 * 109.47268 * 60.00400 * 1 2 3 31 31 H 0.97000 * 120.00629 * 180.02562 * 7 6 4 32 32 H 0.97008 * 119.99964 * 265.00130 * 12 2 1 33 33 H 1.08999 * 109.46477 * 65.90534 * 15 13 12 34 34 H 1.09000 * 109.46906 * 305.90755 * 15 13 12 35 35 H 1.08001 * 125.99315 * 179.97438 * 20 19 18 36 36 H 1.08011 * 126.59058 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.46603 * 89.99978 * 23 22 18 38 38 H 1.08994 * 109.46724 * 209.99904 * 23 22 18 39 39 H 1.09001 * 109.47340 * 330.00213 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9759 1.9951 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7286 -3.5875 16 6 2.8411 0.2839 -4.7185 17 1 1.9158 0.8400 -4.8687 18 6 3.9481 1.2397 -4.3551 19 7 5.1862 0.9105 -4.1064 20 6 5.8887 2.0162 -3.8189 21 6 5.0545 3.0708 -3.8929 22 7 3.8232 2.5788 -4.2323 23 6 2.5998 3.3596 -4.4321 24 6 3.2075 -0.4545 -6.0074 25 9 4.3325 -1.2551 -5.7825 26 9 2.1343 -1.2592 -6.4050 27 9 3.4906 0.4757 -7.0134 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.9035 -0.5278 4.4375 32 1 2.2489 -1.6318 -1.1526 33 1 1.9246 -1.4826 -3.8936 34 1 3.6024 -1.2097 -3.3654 35 1 6.9393 2.0542 -3.5715 36 1 5.3083 4.1060 -3.7177 37 1 2.0619 3.4401 -3.4875 38 1 2.8593 4.3564 -4.7886 39 1 1.9681 2.8632 -5.1688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000553427279.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:00 Heat of formation + Delta-G solvation = -148.133337 kcal Electronic energy + Delta-G solvation = -28235.340141 eV Core-core repulsion = 23763.455220 eV Total energy + Delta-G solvation = -4471.884920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.15537 -48.67460 -48.56567 -43.10350 -40.68822 -37.03589 -35.51792 -34.93445 -34.39766 -31.96479 -29.87721 -28.15136 -27.75269 -27.20711 -24.49376 -23.05826 -22.32300 -21.40279 -20.87810 -19.65707 -19.50113 -18.92394 -18.59817 -17.93838 -17.55130 -17.04985 -16.74114 -16.27782 -16.03586 -15.56918 -15.50297 -15.28728 -15.04942 -14.95810 -14.82991 -14.75417 -14.71427 -14.45287 -14.20476 -14.11359 -13.85725 -13.70314 -13.49980 -13.48202 -13.11632 -12.89257 -12.75675 -12.57551 -12.13978 -11.62853 -11.28187 -11.00776 -10.88643 -10.78946 -10.52651 -9.86828 -9.39579 -8.38408 -6.44738 0.95296 1.26420 1.34133 1.43178 1.50448 1.72017 1.92505 2.11623 2.24995 2.30725 2.77999 2.82638 2.96518 2.98310 3.41885 3.54552 3.74116 3.96191 4.00210 4.12651 4.36972 4.41672 4.46304 4.52902 4.58465 4.63619 4.72076 4.74389 4.77157 5.00086 5.32687 5.33658 5.44516 5.64236 5.81583 6.12159 6.16736 6.57567 6.84266 7.06071 7.17698 7.40033 8.77227 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.004144 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.881033 B = 6755.437409 C = 7300.997709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.021 0.979 4 C -0.535 4.535 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.936 5.936 8 Si 0.943 3.057 9 H -0.258 1.258 10 H -0.295 1.295 11 H -0.260 1.260 12 N -0.701 5.701 13 C 0.514 3.486 14 O -0.576 6.576 15 C -0.131 4.131 16 C -0.024 4.024 17 H 0.146 0.854 18 C 0.184 3.816 19 N -0.506 5.506 20 C -0.056 4.056 21 C -0.043 4.043 22 N -0.437 5.437 23 C 0.069 3.931 24 C 0.471 3.529 25 F -0.173 7.173 26 F -0.172 7.172 27 F -0.184 7.184 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.270 0.730 32 H 0.407 0.593 33 H 0.145 0.855 34 H 0.113 0.887 35 H 0.186 0.814 36 H 0.209 0.791 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.399 6.163 -21.015 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.142 3.858 3 H 0.039 0.961 4 C -0.574 4.574 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.771 3.229 9 H -0.184 1.184 10 H -0.223 1.223 11 H -0.185 1.185 12 N -0.349 5.349 13 C 0.301 3.699 14 O -0.457 6.457 15 C -0.171 4.171 16 C -0.045 4.045 17 H 0.163 0.837 18 C -0.077 4.077 19 N -0.226 5.226 20 C -0.204 4.204 21 C -0.178 4.178 22 N -0.117 5.117 23 C -0.072 4.072 24 C 0.416 3.584 25 F -0.154 7.154 26 F -0.153 7.153 27 F -0.165 7.165 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.242 0.758 33 H 0.162 0.838 34 H 0.132 0.868 35 H 0.203 0.797 36 H 0.225 0.775 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.436 6.268 -20.914 21.837 hybrid contribution -0.277 0.742 0.715 1.067 sum -0.713 7.010 -20.198 21.392 Atomic orbital electron populations 1.22321 0.97460 1.01742 0.99604 1.18699 0.91305 0.92887 0.82896 0.96105 1.21301 1.32304 1.13552 0.90200 0.92950 1.25602 0.96929 0.99469 0.95294 1.69985 1.46732 1.42055 0.98692 0.85944 0.79723 0.80150 0.77130 1.18398 1.22261 1.18511 1.45989 1.65349 1.14449 1.09139 1.20553 0.77281 0.87149 0.84946 1.90578 1.52580 1.16808 1.85702 1.21685 1.06146 0.98231 0.91084 1.20411 0.97788 0.94796 0.91523 0.83663 1.22071 0.93847 0.83229 1.08602 1.70109 1.02583 1.31287 1.18585 1.22695 1.01378 0.88052 1.08305 1.23291 0.84065 1.02136 1.08274 1.45260 1.10466 1.06935 1.49058 1.22278 0.84111 0.97047 1.03766 1.19996 0.74961 0.77814 0.85592 1.93235 1.52959 1.74689 1.94548 1.93213 1.55539 1.74629 1.91937 1.93175 1.93732 1.65886 1.63718 0.91724 0.94325 0.92881 0.92094 0.75836 0.83761 0.86839 0.79712 0.77470 0.90735 0.86861 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.25 8.96 71.98 0.65 -5.60 16 2 C 0.25 11.24 2.15 44.25 0.10 11.34 16 3 H 0.02 1.07 6.64 -2.39 -0.02 1.06 16 4 C -0.54 -28.92 9.31 25.60 0.24 -28.68 16 5 H 0.05 3.05 7.98 -2.91 -0.02 3.03 16 6 C 0.03 1.49 5.45 84.66 0.46 1.95 16 7 N -0.94 -56.08 13.96 21.44 0.30 -55.78 16 8 Si 0.94 43.91 24.37 68.60 1.67 45.59 16 9 H -0.26 -11.22 6.87 99.48 0.68 -10.54 16 10 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.26 -11.88 6.53 99.48 0.65 -11.23 16 12 N -0.70 -25.98 5.07 -446.10 -2.26 -28.25 16 13 C 0.51 17.02 7.48 87.66 0.66 17.68 16 14 O -0.58 -21.36 13.53 -3.06 -0.04 -21.40 16 15 C -0.13 -3.20 4.87 29.85 0.15 -3.06 16 16 C -0.02 -0.56 1.83 -11.54 -0.02 -0.58 16 17 H 0.15 2.97 6.42 -2.39 -0.02 2.95 16 18 C 0.18 5.25 4.82 138.13 0.67 5.92 16 19 N -0.51 -16.18 10.74 -188.13 -2.02 -18.20 16 20 C -0.06 -1.54 11.87 83.52 0.99 -0.55 16 21 C -0.04 -1.01 11.58 83.09 0.96 -0.05 16 22 N -0.44 -10.98 3.08 -537.61 -1.66 -12.64 16 23 C 0.07 1.26 10.29 127.77 1.31 2.57 16 24 C 0.47 10.72 2.69 71.98 0.19 10.91 16 25 F -0.17 -4.52 16.13 44.97 0.73 -3.79 16 26 F -0.17 -3.44 16.89 44.97 0.76 -2.68 16 27 F -0.18 -4.37 16.90 44.97 0.76 -3.61 16 28 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.04 1.63 3.27 -2.39 -0.01 1.62 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.41 13.49 8.54 -92.70 -0.79 12.69 16 33 H 0.14 2.52 7.79 -2.39 -0.02 2.50 16 34 H 0.11 2.91 7.87 -2.39 -0.02 2.89 16 35 H 0.19 4.17 8.06 -2.91 -0.02 4.14 16 36 H 0.21 3.18 8.06 -2.90 -0.02 3.16 16 37 H 0.07 1.67 7.46 -2.39 -0.02 1.66 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.09 1.42 7.06 -2.39 -0.02 1.41 16 Total: -1.00 -71.28 334.35 4.82 -66.46 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.24 Total: 22.46 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.35 Total: 11.84 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -5.64 Total: -114.86 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.04 Total: -21.40 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 2.24 Total: -10.08 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.67 Total: 45.59 kcal Total: -71.28 4.82 -66.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553427279.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.677 kcal (2) G-P(sol) polarization free energy of solvation -71.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds