Wall clock time and date at job start Tue Mar 31 2020 12:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28445 * 125.19264 * 2 1 4 4 C 1.30860 * 110.92705 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.06571 * 180.02562 * 4 3 2 6 6 F 1.39895 * 109.47028 * 5.02620 * 5 4 3 7 7 F 1.39898 * 109.46760 * 245.02298 * 5 4 3 8 8 F 1.39899 * 109.46991 * 125.02846 * 5 4 3 9 9 C 1.39669 * 107.86560 * 0.26817 * 4 3 2 10 10 C 1.36601 * 125.18732 * 180.02562 * 2 1 3 11 11 C 1.47158 * 126.88828 * 0.03351 * 10 2 1 12 12 O 1.21628 * 119.99554 * 5.36159 * 11 10 2 13 13 N 1.34777 * 120.00283 * 185.35526 * 11 10 2 14 14 C 1.46500 * 120.00213 * 185.14900 * 13 11 10 15 15 C 1.52990 * 109.47107 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47438 * 299.99776 * 15 14 13 17 17 C 1.52999 * 109.47544 * 60.00381 * 15 14 13 18 18 C 1.50703 * 109.46844 * 180.02562 * 15 14 13 19 19 H 1.07990 * 120.00438 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99767 * 179.97438 * 18 15 14 21 21 N 1.31517 * 120.00363 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 120.00116 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47027 * 59.99941 * 22 20 18 24 24 H 1.48495 * 109.47424 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46903 * 300.00079 * 22 20 18 26 26 H 1.09001 * 109.47139 * 86.13838 * 1 2 3 27 27 H 1.09001 * 109.47248 * 206.13879 * 1 2 3 28 28 H 1.08999 * 109.47309 * 326.14124 * 1 2 3 29 29 H 1.08003 * 127.32435 * 179.70545 * 9 4 3 30 30 H 0.96997 * 119.99598 * 5.15087 * 13 11 10 31 31 H 1.09001 * 109.47150 * 300.00431 * 14 13 11 32 32 H 1.09004 * 109.47023 * 60.00068 * 14 13 11 33 33 H 1.08996 * 109.46628 * 59.99937 * 16 15 14 34 34 H 1.08996 * 109.47580 * 179.97438 * 16 15 14 35 35 H 1.09004 * 109.46986 * 300.00438 * 16 15 14 36 36 H 1.08994 * 109.47465 * 59.99560 * 17 15 14 37 37 H 1.08996 * 109.47501 * 180.02562 * 17 15 14 38 38 H 1.09003 * 109.46690 * 299.99717 * 17 15 14 39 39 H 0.96993 * 120.00534 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4734 0.7272 0.0005 5 6 4.6335 1.6892 0.0013 6 9 4.1537 2.9982 0.1168 7 9 5.3485 1.5584 -1.1941 8 9 5.4752 1.4040 1.0817 9 6 3.5611 -0.6667 -0.0053 10 6 2.2521 -1.1164 -0.0005 11 6 1.7992 -2.5166 -0.0018 12 8 0.6143 -2.7723 -0.1010 13 7 2.6974 -3.5155 0.1068 14 6 2.2605 -4.9092 -0.0077 15 6 3.4667 -5.8365 0.1524 16 6 4.4926 -5.5324 -0.9412 17 6 4.1034 -5.6129 1.5255 18 6 3.0173 -7.2701 0.0340 19 1 1.9755 -7.4971 -0.1377 20 6 3.9362 -8.2920 0.1450 21 7 5.2048 -8.0158 0.3546 22 14 3.3793 -10.0690 -0.0024 23 1 2.7616 -10.2852 -1.3354 24 1 4.5500 -10.9692 0.1531 25 1 2.3834 -10.3653 1.0586 26 1 -0.3633 0.0692 -1.0253 27 1 -0.3634 -0.9226 0.4527 28 1 -0.3634 0.8534 0.5725 29 1 4.4594 -1.2663 -0.0109 30 1 3.6331 -3.3117 0.2607 31 1 1.5299 -5.1260 0.7716 32 1 1.8065 -5.0684 -0.9858 33 1 4.8177 -4.4955 -0.8561 34 1 5.3522 -6.1928 -0.8269 35 1 4.0390 -5.6917 -1.9195 36 1 3.3726 -5.8297 2.3045 37 1 4.9630 -6.2733 1.6393 38 1 4.4286 -4.5760 1.6106 39 1 5.8512 -8.7347 0.4331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563017632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:25 Heat of formation + Delta-G solvation = -112.479769 kcal Electronic energy + Delta-G solvation = -27101.475185 eV Core-core repulsion = 22631.136319 eV Total energy + Delta-G solvation = -4470.338866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.27939 -47.80093 -47.78253 -43.02824 -39.32365 -36.54908 -34.26678 -33.42060 -31.68071 -30.58691 -28.85836 -25.97405 -25.81231 -25.42574 -25.15714 -23.13015 -21.56686 -20.36708 -19.11479 -18.68956 -18.48162 -18.35440 -16.99670 -16.64149 -16.37878 -15.76315 -15.15242 -14.83002 -14.72234 -14.64648 -14.53335 -14.21675 -14.20198 -13.92446 -13.91565 -13.69720 -13.16958 -13.01380 -12.98435 -12.90382 -12.42900 -12.28443 -11.49206 -11.39993 -11.27251 -10.92379 -10.79426 -10.47970 -10.29728 -10.02785 -9.77508 -9.73525 -9.49479 -9.44000 -8.89305 -8.67026 -8.42863 -6.08617 -4.19483 0.99015 1.71196 1.79443 2.52288 3.17033 3.25861 3.28087 3.30944 3.35129 3.51975 3.74007 4.22660 4.33972 4.44798 4.58600 4.86140 4.92666 5.04228 5.18322 5.20460 5.35459 5.77840 6.05066 6.16602 6.19823 6.38619 6.55650 6.73293 6.77084 6.83317 6.91771 7.24994 7.39138 7.46960 7.61570 7.73843 7.92725 8.03954 8.23555 8.33503 8.80473 9.46855 10.92755 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003078 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.670621 B = 9095.146155 C =10117.492513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.239 5.239 3 N -0.225 5.225 4 C -0.075 4.075 5 C 0.562 3.438 6 F -0.169 7.169 7 F -0.168 7.168 8 F -0.167 7.167 9 C -0.144 4.144 10 C -0.017 4.017 11 C 0.580 3.420 12 O -0.546 6.546 13 N -0.693 5.693 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.510 4.510 19 H 0.058 0.942 20 C 0.068 3.932 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.175 0.825 30 H 0.403 0.597 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.006 0.994 34 H 0.087 0.913 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.006 0.994 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 17.154 -0.118 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.028 5.028 3 N -0.062 5.062 4 C -0.231 4.231 5 C 0.506 3.494 6 F -0.150 7.150 7 F -0.149 7.149 8 F -0.148 7.148 9 C -0.173 4.173 10 C -0.145 4.145 11 C 0.364 3.636 12 O -0.425 6.425 13 N -0.343 5.343 14 C 0.010 3.990 15 C 0.056 3.944 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.548 4.548 19 H 0.076 0.924 20 C -0.134 4.134 21 N -0.522 5.522 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.115 0.885 29 H 0.193 0.807 30 H 0.239 0.761 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.025 0.975 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.040 17.742 -0.180 18.197 hybrid contribution 0.852 -1.326 -0.051 1.577 sum -3.188 16.416 -0.231 16.724 Atomic orbital electron populations 1.22578 0.71102 1.06778 1.05413 1.45752 1.08408 1.01389 1.47223 1.73068 1.02140 1.13919 1.17055 1.21528 0.91941 0.93834 1.15802 1.16730 0.80473 0.78185 0.74035 1.93217 1.88031 1.38075 1.95693 1.93244 1.79497 1.95716 1.46492 1.93243 1.72696 1.93385 1.55507 1.21999 0.97081 0.92761 1.05417 1.21761 0.90366 0.90674 1.11658 1.16799 0.86208 0.82494 0.78136 1.90767 1.15980 1.84201 1.51552 1.46105 1.11096 1.07196 1.69908 1.21901 0.99544 0.76670 1.00887 1.18376 0.89866 0.93220 0.92987 1.21856 1.02202 0.97224 0.97748 1.21851 1.02379 0.97350 0.97436 1.20902 0.94425 0.89495 1.49979 0.92414 1.24870 0.94864 0.98993 0.94649 1.69780 1.01306 1.32164 1.48991 0.86621 0.78083 0.84376 0.78709 1.20261 1.21291 1.20268 0.88961 0.86127 0.88482 0.80743 0.76075 0.92013 0.92118 0.97477 0.89418 0.95297 0.95309 0.89430 0.97471 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.88 59.84 0.65 1.40 16 2 N -0.24 -3.03 3.75 -63.88 -0.24 -3.27 16 3 N -0.23 -2.98 11.68 33.64 0.39 -2.59 16 4 C -0.07 -0.95 6.50 -82.47 -0.54 -1.49 16 5 C 0.56 6.55 3.51 36.01 0.13 6.67 16 6 F -0.17 -2.02 17.14 2.25 0.04 -1.98 16 7 F -0.17 -1.95 17.30 2.25 0.04 -1.91 16 8 F -0.17 -1.91 17.30 2.25 0.04 -1.87 16 9 C -0.14 -1.79 10.43 -38.98 -0.41 -2.20 16 10 C -0.02 -0.23 6.96 -82.06 -0.57 -0.80 16 11 C 0.58 9.15 7.78 -12.64 -0.10 9.05 16 12 O -0.55 -9.70 14.69 5.25 0.08 -9.62 16 13 N -0.69 -11.20 4.94 -61.47 -0.30 -11.50 16 14 C 0.13 2.54 4.51 -4.05 -0.02 2.53 16 15 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 16 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 17 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 18 C -0.51 -12.68 8.01 -34.44 -0.28 -12.96 16 19 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.88 -22.69 9.35 55.43 0.52 -22.17 16 22 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.12 1.23 6.22 -51.93 -0.32 0.91 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.18 1.77 7.63 -52.48 -0.40 1.37 16 30 H 0.40 5.90 5.25 -40.82 -0.21 5.68 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 34 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.08 6.07 -51.93 -0.32 1.77 16 38 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 39 H 0.26 6.53 8.31 -40.82 -0.34 6.20 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -27.30 337.26 -4.43 -31.74 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.36 Total: 3.14 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.70 Total: -0.04 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.37 Total: -39.53 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.12 Total: -5.76 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.30 -4.43 -31.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563017632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.744 kcal (2) G-P(sol) polarization free energy of solvation -27.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds