Wall clock time and date at job start Tue Mar 31 2020 12:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28445 * 125.19264 * 2 1 4 4 C 1.30860 * 110.92705 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.06571 * 180.02562 * 4 3 2 6 6 F 1.39895 * 109.47028 * 5.02620 * 5 4 3 7 7 F 1.39898 * 109.46760 * 245.02298 * 5 4 3 8 8 F 1.39899 * 109.46991 * 125.02846 * 5 4 3 9 9 C 1.39669 * 107.86560 * 0.26817 * 4 3 2 10 10 C 1.36601 * 125.18732 * 180.02562 * 2 1 3 11 11 C 1.47158 * 126.88828 * 0.03351 * 10 2 1 12 12 O 1.21628 * 119.99554 * 5.36159 * 11 10 2 13 13 N 1.34777 * 120.00283 * 185.35526 * 11 10 2 14 14 C 1.46500 * 120.00213 * 185.14900 * 13 11 10 15 15 C 1.52990 * 109.47107 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47438 * 299.99776 * 15 14 13 17 17 C 1.52999 * 109.47544 * 60.00381 * 15 14 13 18 18 C 1.50703 * 109.46844 * 180.02562 * 15 14 13 19 19 H 1.07990 * 120.00438 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99767 * 179.97438 * 18 15 14 21 21 N 1.31517 * 120.00363 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 120.00116 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47027 * 59.99941 * 22 20 18 24 24 H 1.48495 * 109.47424 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46903 * 300.00079 * 22 20 18 26 26 H 1.09001 * 109.47139 * 86.13838 * 1 2 3 27 27 H 1.09001 * 109.47248 * 206.13879 * 1 2 3 28 28 H 1.08999 * 109.47309 * 326.14124 * 1 2 3 29 29 H 1.08003 * 127.32435 * 179.70545 * 9 4 3 30 30 H 0.96997 * 119.99598 * 5.15087 * 13 11 10 31 31 H 1.09001 * 109.47150 * 300.00431 * 14 13 11 32 32 H 1.09004 * 109.47023 * 60.00068 * 14 13 11 33 33 H 1.08996 * 109.46628 * 59.99937 * 16 15 14 34 34 H 1.08996 * 109.47580 * 179.97438 * 16 15 14 35 35 H 1.09004 * 109.46986 * 300.00438 * 16 15 14 36 36 H 1.08994 * 109.47465 * 59.99560 * 17 15 14 37 37 H 1.08996 * 109.47501 * 180.02562 * 17 15 14 38 38 H 1.09003 * 109.46690 * 299.99717 * 17 15 14 39 39 H 0.96993 * 120.00534 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4734 0.7272 0.0005 5 6 4.6335 1.6892 0.0013 6 9 4.1537 2.9982 0.1168 7 9 5.3485 1.5584 -1.1941 8 9 5.4752 1.4040 1.0817 9 6 3.5611 -0.6667 -0.0053 10 6 2.2521 -1.1164 -0.0005 11 6 1.7992 -2.5166 -0.0018 12 8 0.6143 -2.7723 -0.1010 13 7 2.6974 -3.5155 0.1068 14 6 2.2605 -4.9092 -0.0077 15 6 3.4667 -5.8365 0.1524 16 6 4.4926 -5.5324 -0.9412 17 6 4.1034 -5.6129 1.5255 18 6 3.0173 -7.2701 0.0340 19 1 1.9755 -7.4971 -0.1377 20 6 3.9362 -8.2920 0.1450 21 7 5.2048 -8.0158 0.3546 22 14 3.3793 -10.0690 -0.0024 23 1 2.7616 -10.2852 -1.3354 24 1 4.5500 -10.9692 0.1531 25 1 2.3834 -10.3653 1.0586 26 1 -0.3633 0.0692 -1.0253 27 1 -0.3634 -0.9226 0.4527 28 1 -0.3634 0.8534 0.5725 29 1 4.4594 -1.2663 -0.0109 30 1 3.6331 -3.3117 0.2607 31 1 1.5299 -5.1260 0.7716 32 1 1.8065 -5.0684 -0.9858 33 1 4.8177 -4.4955 -0.8561 34 1 5.3522 -6.1928 -0.8269 35 1 4.0390 -5.6917 -1.9195 36 1 3.3726 -5.8297 2.3045 37 1 4.9630 -6.2733 1.6393 38 1 4.4286 -4.5760 1.6106 39 1 5.8512 -8.7347 0.4331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563017632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:24 Heat of formation + Delta-G solvation = -127.991438 kcal Electronic energy + Delta-G solvation = -27102.147821 eV Core-core repulsion = 22631.136319 eV Total energy + Delta-G solvation = -4471.011502 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.18825 -48.70088 -48.69817 -44.01308 -40.65676 -38.15201 -35.42621 -34.72896 -33.13307 -31.97764 -29.71804 -27.54701 -27.52752 -26.98167 -26.26682 -24.31463 -22.62044 -21.47504 -20.65043 -19.69897 -19.59576 -19.37897 -18.06045 -17.75371 -17.61391 -17.27285 -16.66818 -16.26442 -16.13898 -15.55271 -15.49201 -15.24327 -15.11072 -15.04104 -14.83165 -14.82657 -14.67999 -14.50927 -14.02671 -13.90526 -13.78483 -13.30463 -13.17687 -13.06245 -12.66061 -12.61397 -12.39014 -12.22839 -12.11587 -11.45953 -11.39884 -11.11736 -10.77071 -10.68589 -10.48684 -10.36815 -10.02101 -7.99604 -6.15183 -0.06363 0.73656 0.87888 1.46436 1.48478 1.53350 1.56486 1.97253 2.14998 2.48739 2.55952 2.79932 3.24669 3.32120 3.44382 3.56875 3.88862 4.21558 4.24781 4.29621 4.42568 4.52886 4.60938 4.73404 4.86065 4.99656 5.08887 5.11650 5.22914 5.26122 5.28970 5.54787 5.70577 5.70780 6.18558 6.23671 6.34350 6.45440 6.52322 6.88548 7.01738 7.52739 8.98879 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003078 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.670621 B = 9095.146155 C =10117.492513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.237 5.237 3 N -0.230 5.230 4 C -0.086 4.086 5 C 0.568 3.432 6 F -0.171 7.171 7 F -0.167 7.167 8 F -0.165 7.165 9 C -0.133 4.133 10 C -0.034 4.034 11 C 0.587 3.413 12 O -0.568 6.568 13 N -0.689 5.689 14 C 0.149 3.851 15 C 0.051 3.949 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.528 4.528 19 H 0.048 0.952 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.942 3.058 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.197 0.803 30 H 0.412 0.588 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 18.398 -0.151 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.026 5.026 3 N -0.067 5.067 4 C -0.241 4.241 5 C 0.512 3.488 6 F -0.152 7.152 7 F -0.148 7.148 8 F -0.146 7.146 9 C -0.161 4.161 10 C -0.162 4.162 11 C 0.372 3.628 12 O -0.448 6.448 13 N -0.340 5.340 14 C 0.026 3.974 15 C 0.050 3.950 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.567 4.567 19 H 0.066 0.934 20 C -0.170 4.170 21 N -0.536 5.536 22 Si 0.769 3.231 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.214 0.786 30 H 0.250 0.750 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.969 19.002 -0.211 19.413 hybrid contribution 0.795 -1.649 -0.040 1.831 sum -3.174 17.353 -0.251 17.643 Atomic orbital electron populations 1.22810 0.69567 1.07367 1.06684 1.46066 1.09345 1.00891 1.46348 1.73068 1.02524 1.14056 1.17052 1.21706 0.92092 0.94227 1.16075 1.16580 0.80206 0.77901 0.74078 1.93214 1.88081 1.38203 1.95711 1.93249 1.79427 1.95694 1.46463 1.93250 1.72579 1.93354 1.55420 1.22299 0.97321 0.92829 1.03688 1.21447 0.91154 0.89834 1.13750 1.16921 0.85650 0.83148 0.77104 1.90761 1.16983 1.84735 1.52354 1.45848 1.11667 1.06058 1.70429 1.21438 0.98082 0.78011 0.99883 1.18368 0.90850 0.92299 0.93458 1.21703 1.00824 0.98588 0.97040 1.21698 1.00972 0.98640 0.96809 1.21240 0.94068 0.91572 1.49812 0.93360 1.25419 0.95082 1.01734 0.94795 1.69895 1.01703 1.32615 1.49433 0.85865 0.77584 0.81196 0.78427 1.20250 1.21175 1.20288 0.87622 0.87162 0.85974 0.78586 0.75013 0.93191 0.93136 0.94246 0.92001 0.96043 0.96128 0.91985 0.94372 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.88 127.77 1.39 2.63 16 2 N -0.24 -5.54 3.75 -356.03 -1.33 -6.87 16 3 N -0.23 -5.58 11.68 -47.49 -0.55 -6.13 16 4 C -0.09 -1.99 6.50 43.05 0.28 -1.71 16 5 C 0.57 12.06 3.51 71.24 0.25 12.31 16 6 F -0.17 -3.77 17.14 44.97 0.77 -3.00 16 7 F -0.17 -3.52 17.30 44.97 0.78 -2.74 16 8 F -0.16 -3.41 17.30 44.97 0.78 -2.63 16 9 C -0.13 -2.96 10.43 22.66 0.24 -2.73 16 10 C -0.03 -0.87 6.96 40.79 0.28 -0.59 16 11 C 0.59 17.63 7.78 86.59 0.67 18.30 16 12 O -0.57 -19.69 14.69 -4.12 -0.06 -19.75 16 13 N -0.69 -21.06 4.94 -466.65 -2.30 -23.37 16 14 C 0.15 5.64 4.51 86.38 0.39 6.03 16 15 C 0.05 2.18 0.50 -52.93 -0.03 2.15 16 16 C -0.12 -5.11 8.08 71.98 0.58 -4.52 16 17 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 18 C -0.53 -26.39 8.01 25.60 0.21 -26.18 16 19 H 0.05 2.44 7.74 -2.92 -0.02 2.41 16 20 C 0.03 1.50 5.15 84.65 0.44 1.94 16 21 N -0.90 -46.23 9.35 21.45 0.20 -46.03 16 22 Si 0.94 41.11 29.54 68.60 2.03 43.14 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.11 2.14 6.22 -2.39 -0.01 2.12 16 28 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.20 3.32 7.63 -2.91 -0.02 3.30 16 30 H 0.41 10.95 5.25 -92.71 -0.49 10.47 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 34 H 0.06 2.90 6.07 -2.39 -0.01 2.89 16 35 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 38 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 39 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 Total: -1.00 -57.32 337.26 6.21 -51.11 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.63 Total: 13.19 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.28 Total: 3.08 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -3.99 Total: -82.40 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.06 Total: -19.75 kcal Atomic # 9 Polarization: -10.70 SS G_CDS: 2.33 Total: -8.37 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -57.32 6.21 -51.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563017632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.878 kcal (2) G-P(sol) polarization free energy of solvation -57.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds