Wall clock time and date at job start Tue Mar 31 2020 14:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99529 * 2 1 4 4 C 1.50701 * 109.47414 * 269.99924 * 3 2 1 5 5 H 1.08008 * 119.99629 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00198 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99809 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00206 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.46977 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46981 * 120.00020 * 8 6 4 11 11 H 1.48496 * 109.47154 * 240.00203 * 8 6 4 12 12 C 1.34772 * 120.00083 * 180.02562 * 2 1 3 13 13 O 1.21595 * 120.00091 * 179.97438 * 12 2 1 14 14 N 1.34773 * 120.00076 * 359.97438 * 12 2 1 15 15 C 1.40104 * 119.99927 * 184.58330 * 14 12 2 16 16 C 1.38864 * 119.94363 * 144.90409 * 15 14 12 17 17 C 1.38217 * 120.12787 * 180.20680 * 16 15 14 18 18 C 1.38522 * 119.90222 * 359.48754 * 17 16 15 19 19 C 1.39426 * 120.09521 * 0.54716 * 18 17 16 20 20 C 1.38327 * 119.93468 * 359.69636 * 19 18 17 21 21 O 1.35997 * 119.44898 * 179.65722 * 19 18 17 22 22 C 1.42996 * 116.72905 * 327.16951 * 21 19 18 23 23 C 1.50747 * 109.64111 * 46.46970 * 22 21 19 24 24 O 1.21304 * 120.13434 * 148.61820 * 23 22 21 25 25 N 1.35082 * 119.73418 * 328.63955 * 23 22 21 26 26 C 1.46496 * 120.51912 * 181.70636 * 25 23 22 27 27 H 1.08999 * 109.47126 * 269.99416 * 1 2 3 28 28 H 1.09002 * 109.47111 * 30.00028 * 1 2 3 29 29 H 1.09004 * 109.46934 * 149.99744 * 1 2 3 30 30 H 1.08998 * 109.47521 * 30.00523 * 3 2 1 31 31 H 1.09006 * 109.46336 * 150.00278 * 3 2 1 32 32 H 0.97003 * 120.00326 * 179.97438 * 7 6 4 33 33 H 0.96995 * 119.99968 * 4.58988 * 14 12 2 34 34 H 1.08001 * 119.93811 * 359.92615 * 16 15 14 35 35 H 1.07993 * 120.05207 * 179.71165 * 17 16 15 36 36 H 1.08001 * 120.08534 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.43463 * 166.52216 * 22 21 19 38 38 H 1.09002 * 109.43965 * 286.44866 * 22 21 19 39 39 H 1.09007 * 109.46492 * 0.02562 * 26 25 23 40 40 H 1.09004 * 109.47105 * 119.99660 * 26 25 23 41 41 H 1.08997 * 109.47174 * 240.00460 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5548 3.6172 -0.6730 8 14 3.4374 3.4173 -3.4338 9 1 2.8585 2.4179 -4.3672 10 1 2.8003 4.7383 -3.6664 11 1 4.8999 3.5249 -3.6678 12 6 2.1389 -1.1672 -0.0005 13 8 3.3548 -1.1672 -0.0010 14 7 1.4650 -2.3343 -0.0005 15 6 2.1623 -3.5457 0.0959 16 6 1.6084 -4.6106 0.7941 17 6 2.2948 -5.8060 0.8953 18 6 3.5329 -5.9448 0.2897 19 6 4.0919 -4.8771 -0.4114 20 6 3.4059 -3.6797 -0.5075 21 8 5.3113 -5.0255 -0.9949 22 6 6.2421 -5.8838 -0.3303 23 6 5.5555 -7.1662 0.0653 24 8 6.1807 -8.2050 0.1034 25 7 4.2412 -7.1539 0.3769 26 6 3.5653 -8.3830 0.7995 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0322 4.4428 -0.8502 33 1 0.4974 -2.3357 -0.0674 34 1 0.6413 -4.5031 1.2629 35 1 1.8649 -6.6319 1.4425 36 1 3.8364 -2.8512 -1.0503 37 1 7.0713 -6.1082 -1.0012 38 1 6.6217 -5.3857 0.5619 39 1 4.2791 -9.2068 0.8045 40 1 3.1597 -8.2482 1.8023 41 1 2.7545 -8.6085 0.1068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564159601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:02 Heat of formation + Delta-G solvation = -67.391255 kcal Electronic energy + Delta-G solvation = -26496.889597 eV Core-core repulsion = 22570.362656 eV Total energy + Delta-G solvation = -3926.526941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.60740 -41.46899 -39.90415 -38.74274 -37.23195 -36.50179 -35.23163 -34.42138 -31.73833 -30.39729 -30.27485 -29.28036 -27.39672 -27.03014 -25.26935 -24.08844 -23.52831 -21.05889 -20.77012 -20.17784 -19.12713 -18.67729 -18.35551 -18.08009 -17.54873 -16.85593 -16.62730 -16.54122 -16.23228 -15.88945 -15.76827 -15.29769 -15.06650 -14.89788 -14.59697 -14.40523 -14.36342 -13.89340 -13.54018 -13.49640 -13.44987 -13.18359 -13.07295 -12.79680 -12.65375 -12.56255 -12.49494 -12.18239 -11.76284 -11.65963 -11.23180 -10.92693 -10.62950 -10.52005 -9.65936 -9.42465 -8.60564 -8.19966 -6.34718 -0.04982 0.25369 1.11007 1.37368 1.40300 1.47978 1.51195 1.69629 2.14218 2.27839 2.41344 2.71516 2.87616 3.08020 3.12526 3.61256 3.91209 4.03727 4.09630 4.19795 4.30770 4.33347 4.34863 4.50848 4.65326 4.70320 4.73329 4.80987 4.88271 4.99083 5.01191 5.19327 5.24662 5.31517 5.39129 5.57040 5.74792 5.80303 5.80906 6.07846 6.10255 6.26243 6.56954 6.74559 7.07545 7.32513 7.64787 8.86211 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.019199 B = 0.003071 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.039481 B = 9116.309716 C =10183.493880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.619 5.619 3 C 0.275 3.725 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.965 3.035 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.284 1.284 12 C 0.691 3.309 13 O -0.619 6.619 14 N -0.671 5.671 15 C 0.172 3.828 16 C -0.121 4.121 17 C -0.083 4.083 18 C 0.064 3.936 19 C 0.081 3.919 20 C -0.140 4.140 21 O -0.322 6.322 22 C 0.047 3.953 23 C 0.485 3.515 24 O -0.545 6.545 25 N -0.550 5.550 26 C 0.068 3.932 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.031 0.969 31 H 0.000 1.000 32 H 0.267 0.733 33 H 0.424 0.576 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.116 0.884 37 H 0.163 0.837 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.945 -22.130 4.793 24.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.354 5.354 3 C 0.154 3.846 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.568 5.568 8 Si 0.790 3.210 9 H -0.193 1.193 10 H -0.194 1.194 11 H -0.210 1.210 12 C 0.393 3.607 13 O -0.499 6.499 14 N -0.323 5.323 15 C 0.076 3.924 16 C -0.142 4.142 17 C -0.103 4.103 18 C -0.031 4.031 19 C 0.034 3.966 20 C -0.162 4.162 21 O -0.236 6.236 22 C -0.031 4.031 23 C 0.274 3.726 24 O -0.424 6.424 25 N -0.275 5.275 26 C -0.072 4.072 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.018 0.982 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.194 0.806 35 H 0.196 0.804 36 H 0.134 0.866 37 H 0.181 0.819 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.630 -22.395 4.706 24.122 hybrid contribution 0.400 0.848 -0.864 1.275 sum -7.230 -21.547 3.842 23.050 Atomic orbital electron populations 1.21930 0.77725 1.04015 1.02857 1.47357 1.08088 1.04757 1.75154 1.18705 0.91006 0.79037 0.95895 1.21752 1.36616 1.06364 0.93198 0.92982 1.25803 0.94995 0.96513 1.01711 1.70046 1.38993 1.14890 1.32824 0.85405 0.77793 0.78391 0.79430 1.19299 1.19352 1.20970 1.16141 0.85099 0.81256 0.78226 1.90880 1.13933 1.86380 1.58682 1.42559 1.10766 1.01991 1.76988 1.17464 0.92153 0.86016 0.96782 1.21062 1.02926 0.90979 0.99267 1.20794 0.91587 0.99128 0.98832 1.18138 0.95955 0.85081 1.03885 1.18471 0.86908 0.93012 0.98188 1.20531 0.97369 0.95024 1.03247 1.86237 1.22498 1.66036 1.48860 1.23411 0.91710 0.85886 1.02070 1.21752 0.82467 0.92000 0.76371 1.90728 1.64712 1.33733 1.53182 1.45631 1.08718 1.09250 1.63945 1.22135 0.98521 0.84189 1.02339 0.90654 0.90961 0.89289 0.95113 0.98216 0.92422 0.73432 0.80575 0.80398 0.86594 0.81926 0.87102 0.89761 0.88418 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 10.24 127.77 1.31 3.35 16 2 N -0.62 -25.29 2.86 -869.29 -2.48 -27.78 16 3 C 0.28 14.55 5.16 85.63 0.44 14.99 16 4 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.50 5.46 84.65 0.46 0.96 16 7 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 8 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 C 0.69 28.47 8.12 179.06 1.45 29.93 16 13 O -0.62 -32.17 13.35 -4.01 -0.05 -32.22 16 14 N -0.67 -18.94 5.22 -317.05 -1.65 -20.59 16 15 C 0.17 4.67 6.30 38.12 0.24 4.91 16 16 C -0.12 -2.03 9.96 22.41 0.22 -1.81 16 17 C -0.08 -1.27 9.37 22.33 0.21 -1.06 16 18 C 0.06 1.42 6.39 38.12 0.24 1.66 16 19 C 0.08 2.38 6.44 22.58 0.15 2.53 16 20 C -0.14 -4.74 8.64 22.44 0.19 -4.54 16 21 O -0.32 -9.63 10.45 -93.52 -0.98 -10.60 16 22 C 0.05 1.05 7.17 71.25 0.51 1.56 16 23 C 0.48 11.81 7.67 87.62 0.67 12.49 16 24 O -0.55 -15.57 16.51 -3.10 -0.05 -15.62 16 25 N -0.55 -11.38 3.12 -653.38 -2.04 -13.42 16 26 C 0.07 0.87 9.71 127.77 1.24 2.11 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.09 1.65 6.30 -2.38 -0.02 1.64 16 30 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 31 H 0.00 -0.02 7.42 -2.38 -0.02 -0.04 16 32 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 33 H 0.42 8.05 6.52 -92.71 -0.60 7.45 16 34 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.18 1.21 6.79 -2.91 -0.02 1.19 16 36 H 0.12 5.01 6.22 -2.91 -0.02 4.99 16 37 H 0.16 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 1.27 6.96 -2.38 -0.02 1.26 16 40 H 0.10 0.71 7.48 -2.39 -0.02 0.69 16 41 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.48 346.24 3.12 -80.37 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.48 Total: 11.85 kcal Atomic # 6 Polarization: 28.88 SS G_CDS: 7.59 Total: 36.47 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -5.89 Total: -117.23 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -1.08 Total: -58.44 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -83.48 3.12 -80.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564159601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.974 kcal (2) G-P(sol) polarization free energy of solvation -83.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds