Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47323 * 2 1 4 4 C 1.37091 * 120.00620 * 264.52609 * 3 2 1 5 5 H 1.08001 * 120.00583 * 139.24732 * 4 3 2 6 6 C 1.38951 * 119.99879 * 319.25593 * 4 3 2 7 7 N 1.31412 * 120.00159 * 341.19134 * 6 4 3 8 8 Si 1.86798 * 120.00294 * 161.19697 * 6 4 3 9 9 H 1.48508 * 109.47148 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47472 * 119.99382 * 8 6 4 11 11 H 1.48494 * 109.47248 * 239.99772 * 8 6 4 12 12 C 1.34780 * 119.99828 * 84.52985 * 3 2 1 13 13 O 1.21293 * 120.00035 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99744 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47023 * 174.25379 * 14 12 3 16 16 H 1.09002 * 109.47462 * 55.32816 * 15 14 12 17 17 C 1.50705 * 109.47275 * 295.33051 * 15 14 12 18 18 N 1.30494 * 125.65385 * 300.27640 * 17 15 14 19 19 C 1.34123 * 109.26187 * 180.14576 * 18 17 15 20 20 C 1.34671 * 108.01815 * 359.61444 * 19 18 17 21 21 N 1.35046 * 125.64851 * 120.00043 * 17 15 14 22 22 C 1.46502 * 126.39998 * 359.97438 * 21 17 15 23 23 C 1.52996 * 109.47330 * 175.33188 * 15 14 12 24 24 F 1.39905 * 109.47424 * 176.34309 * 23 15 14 25 25 F 1.39903 * 109.47326 * 296.34160 * 23 15 14 26 26 F 1.39899 * 109.47056 * 56.34445 * 23 15 14 27 27 H 1.08996 * 109.47479 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46988 * 300.00036 * 1 2 3 29 29 H 1.09006 * 109.46942 * 59.99800 * 1 2 3 30 30 H 1.09004 * 109.46988 * 239.99964 * 2 1 3 31 31 H 1.08998 * 109.47253 * 120.00239 * 2 1 3 32 32 H 0.96999 * 120.00124 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47469 * 54.25779 * 14 12 3 34 34 H 1.08996 * 109.47420 * 294.25280 * 14 12 3 35 35 H 1.07998 * 125.99162 * 179.88839 * 19 18 17 36 36 H 1.07998 * 126.59353 * 180.24962 * 20 19 18 37 37 H 1.08997 * 109.47531 * 269.98282 * 22 21 17 38 38 H 1.09005 * 109.46598 * 29.98017 * 22 21 17 39 39 H 1.08993 * 109.47083 * 149.97552 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3537 1.9898 -1.1818 5 1 2.0855 3.0219 -1.3529 6 6 3.0385 1.2787 -2.1596 7 7 3.6839 0.1790 -1.8416 8 14 3.0420 1.8860 -3.9261 9 1 2.2470 3.1368 -4.0212 10 1 4.4384 2.1528 -4.3552 11 1 2.4428 0.8511 -4.8065 12 6 2.1381 2.0536 1.1619 13 8 2.5429 3.1970 1.1620 14 6 1.7690 1.3848 2.4610 15 6 2.1298 2.3050 3.6289 16 1 1.6477 3.2728 3.4913 17 6 3.6245 2.4910 3.6787 18 7 4.5049 1.5395 3.8283 19 6 5.7359 2.0719 3.8296 20 6 5.6142 3.4031 3.6663 21 7 4.2750 3.6696 3.5706 22 6 3.6619 4.9871 3.3848 23 6 1.6501 1.6779 4.9393 24 9 2.0529 2.4778 6.0141 25 9 0.2544 1.5818 4.9270 26 9 2.2042 0.4005 5.0754 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.1623 -0.3171 -2.5241 33 1 2.3163 0.4468 2.5551 34 1 0.6979 1.1834 2.4746 35 1 6.6626 1.5279 3.9378 36 1 6.4186 4.1222 3.6196 37 1 3.5595 5.1933 2.3194 38 1 2.6778 4.9992 3.8535 39 1 4.2920 5.7490 3.8435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581318592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = -120.699525 kcal Electronic energy + Delta-G solvation = -28921.541063 eV Core-core repulsion = 24450.845762 eV Total energy + Delta-G solvation = -4470.695301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.92515 -47.47223 -47.30133 -41.76339 -38.69205 -35.26037 -33.96064 -33.64951 -32.03883 -29.46041 -28.67368 -27.09645 -26.59600 -24.65415 -22.97721 -22.19533 -21.06456 -19.97997 -18.85450 -18.30963 -18.00701 -17.41277 -16.75514 -16.57672 -15.49006 -15.39837 -15.05663 -14.65731 -14.41803 -14.13654 -14.08518 -13.94510 -13.80238 -13.51704 -13.47754 -13.25609 -13.00299 -12.91263 -12.76206 -12.53772 -12.43336 -12.06346 -11.81953 -11.63302 -11.54413 -11.11248 -11.07591 -10.92945 -10.39991 -10.33135 -10.09122 -9.61625 -9.18947 -8.94717 -8.51716 -8.05088 -7.45715 -6.33445 -4.02309 2.28101 2.79484 3.13343 3.17719 3.23975 3.29082 3.48922 3.80775 3.92563 4.08638 4.15747 4.23075 4.70067 4.88048 4.95085 5.01668 5.03318 5.14970 5.25496 5.42990 5.67967 5.71739 5.83265 5.85501 5.91160 6.01688 6.18187 6.22563 6.32857 6.53290 6.62479 6.85879 7.09901 7.21683 7.44590 7.55944 8.25680 8.42387 8.46796 9.14934 9.36496 9.96466 10.71350 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.005266 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.544944 B = 5315.746452 C = 6233.079185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 N -0.434 5.434 4 C -0.310 4.310 5 H 0.088 0.912 6 C 0.040 3.960 7 N -0.866 5.866 8 Si 0.916 3.084 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.472 3.528 13 O -0.583 6.583 14 C -0.133 4.133 15 C -0.023 4.023 16 H 0.126 0.874 17 C 0.218 3.782 18 N -0.474 5.474 19 C -0.027 4.027 20 C -0.053 4.053 21 N -0.430 5.430 22 C 0.076 3.924 23 C 0.462 3.538 24 F -0.185 7.185 25 F -0.182 7.182 26 F -0.164 7.164 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.267 0.733 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.168 0.832 36 H 0.172 0.828 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 3.734 10.814 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.024 4.024 3 N -0.152 5.152 4 C -0.438 4.438 5 H 0.105 0.895 6 C -0.165 4.165 7 N -0.503 5.503 8 Si 0.743 3.257 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.259 3.741 13 O -0.467 6.467 14 C -0.174 4.174 15 C -0.045 4.045 16 H 0.144 0.856 17 C -0.044 4.044 18 N -0.193 5.193 19 C -0.176 4.176 20 C -0.187 4.187 21 N -0.110 5.110 22 C -0.066 4.066 23 C 0.406 3.594 24 F -0.166 7.166 25 F -0.164 7.164 26 F -0.146 7.146 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.681 3.456 10.777 11.631 hybrid contribution 0.283 0.870 -0.892 1.278 sum -2.398 4.327 9.884 11.053 Atomic orbital electron populations 1.22222 0.98081 1.00560 1.01476 1.21506 0.91650 0.85555 1.03736 1.43359 1.55476 1.11670 1.04702 1.19354 1.35298 0.98340 0.90817 0.89451 1.25424 0.94047 0.96567 1.00494 1.69958 1.28971 1.17483 1.33853 0.86048 0.78094 0.78985 0.82621 1.19265 1.20805 1.20568 1.19827 0.82128 0.87824 0.84287 1.90440 1.50821 1.18756 1.86698 1.21745 1.03194 0.99794 0.92680 1.20377 0.89912 1.02845 0.91387 0.85583 1.21724 0.93832 0.81606 1.07252 1.70156 0.99607 1.30109 1.19399 1.22174 0.95944 0.91453 1.08075 1.22604 0.85153 0.98980 1.11992 1.44923 1.06384 1.08074 1.51614 1.22037 0.98601 0.81230 1.04776 1.20289 0.74919 0.77543 0.86600 1.93162 1.90487 1.73796 1.59187 1.93172 1.30171 1.96239 1.96804 1.93237 1.85019 1.40013 1.96297 0.92916 0.93870 0.92397 0.87833 0.93087 0.92274 0.87626 0.88672 0.81479 0.81091 0.88757 0.90283 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.16 37.16 0.38 -2.51 16 2 C 0.10 2.14 5.41 -4.04 -0.02 2.12 16 3 N -0.43 -10.69 2.51 -114.81 -0.29 -10.97 16 4 C -0.31 -8.38 8.85 -14.94 -0.13 -8.52 16 5 H 0.09 2.45 7.81 -52.49 -0.41 2.04 16 6 C 0.04 1.04 4.94 -17.47 -0.09 0.95 16 7 N -0.87 -23.48 11.62 55.50 0.65 -22.83 16 8 Si 0.92 20.41 29.59 -169.99 -5.03 15.38 16 9 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 C 0.47 10.94 7.27 -10.98 -0.08 10.86 16 13 O -0.58 -14.48 13.63 5.55 0.08 -14.41 16 14 C -0.13 -2.47 3.61 -27.88 -0.10 -2.57 16 15 C -0.02 -0.40 1.83 -91.77 -0.17 -0.57 16 16 H 0.13 1.97 6.47 -51.93 -0.34 1.63 16 17 C 0.22 4.07 4.76 -155.41 -0.74 3.33 16 18 N -0.47 -9.45 10.70 -10.82 -0.12 -9.57 16 19 C -0.03 -0.47 11.87 -17.81 -0.21 -0.68 16 20 C -0.05 -0.83 11.58 -16.56 -0.19 -1.02 16 21 N -0.43 -7.22 3.04 -121.28 -0.37 -7.59 16 22 C 0.08 1.01 10.26 59.85 0.61 1.62 16 23 C 0.46 7.18 2.69 37.16 0.10 7.28 16 24 F -0.18 -2.83 16.93 2.25 0.04 -2.80 16 25 F -0.18 -2.60 16.86 2.25 0.04 -2.56 16 26 F -0.16 -2.77 16.09 2.25 0.04 -2.74 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.69 6.69 -51.93 -0.35 0.35 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.10 2.47 5.76 -51.93 -0.30 2.17 16 31 H 0.05 1.04 6.51 -51.93 -0.34 0.70 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.11 2.06 6.82 -51.93 -0.35 1.71 16 34 H 0.10 1.53 6.39 -51.93 -0.33 1.20 16 35 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.09 1.44 7.44 -51.93 -0.39 1.06 16 38 H 0.08 0.93 7.04 -51.93 -0.37 0.56 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -32.09 335.30 -4.97 -37.06 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.42 Total: 5.68 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.64 Total: 10.30 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.13 Total: -50.96 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 0.11 Total: -8.10 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.09 -4.97 -37.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581318592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.637 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds