Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47323 * 2 1 4 4 C 1.37091 * 120.00620 * 264.52609 * 3 2 1 5 5 H 1.08001 * 120.00583 * 139.24732 * 4 3 2 6 6 C 1.38951 * 119.99879 * 319.25593 * 4 3 2 7 7 N 1.31412 * 120.00159 * 341.19134 * 6 4 3 8 8 Si 1.86798 * 120.00294 * 161.19697 * 6 4 3 9 9 H 1.48508 * 109.47148 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47472 * 119.99382 * 8 6 4 11 11 H 1.48494 * 109.47248 * 239.99772 * 8 6 4 12 12 C 1.34780 * 119.99828 * 84.52985 * 3 2 1 13 13 O 1.21293 * 120.00035 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99744 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47023 * 174.25379 * 14 12 3 16 16 H 1.09002 * 109.47462 * 55.32816 * 15 14 12 17 17 C 1.50705 * 109.47275 * 295.33051 * 15 14 12 18 18 N 1.30494 * 125.65385 * 300.27640 * 17 15 14 19 19 C 1.34123 * 109.26187 * 180.14576 * 18 17 15 20 20 C 1.34671 * 108.01815 * 359.61444 * 19 18 17 21 21 N 1.35046 * 125.64851 * 120.00043 * 17 15 14 22 22 C 1.46502 * 126.39998 * 359.97438 * 21 17 15 23 23 C 1.52996 * 109.47330 * 175.33188 * 15 14 12 24 24 F 1.39905 * 109.47424 * 176.34309 * 23 15 14 25 25 F 1.39903 * 109.47326 * 296.34160 * 23 15 14 26 26 F 1.39899 * 109.47056 * 56.34445 * 23 15 14 27 27 H 1.08996 * 109.47479 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46988 * 300.00036 * 1 2 3 29 29 H 1.09006 * 109.46942 * 59.99800 * 1 2 3 30 30 H 1.09004 * 109.46988 * 239.99964 * 2 1 3 31 31 H 1.08998 * 109.47253 * 120.00239 * 2 1 3 32 32 H 0.96999 * 120.00124 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47469 * 54.25779 * 14 12 3 34 34 H 1.08996 * 109.47420 * 294.25280 * 14 12 3 35 35 H 1.07998 * 125.99162 * 179.88839 * 19 18 17 36 36 H 1.07998 * 126.59353 * 180.24962 * 20 19 18 37 37 H 1.08997 * 109.47531 * 269.98282 * 22 21 17 38 38 H 1.09005 * 109.46598 * 29.98017 * 22 21 17 39 39 H 1.08993 * 109.47083 * 149.97552 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3537 1.9898 -1.1818 5 1 2.0855 3.0219 -1.3529 6 6 3.0385 1.2787 -2.1596 7 7 3.6839 0.1790 -1.8416 8 14 3.0420 1.8860 -3.9261 9 1 2.2470 3.1368 -4.0212 10 1 4.4384 2.1528 -4.3552 11 1 2.4428 0.8511 -4.8065 12 6 2.1381 2.0536 1.1619 13 8 2.5429 3.1970 1.1620 14 6 1.7690 1.3848 2.4610 15 6 2.1298 2.3050 3.6289 16 1 1.6477 3.2728 3.4913 17 6 3.6245 2.4910 3.6787 18 7 4.5049 1.5395 3.8283 19 6 5.7359 2.0719 3.8296 20 6 5.6142 3.4031 3.6663 21 7 4.2750 3.6696 3.5706 22 6 3.6619 4.9871 3.3848 23 6 1.6501 1.6779 4.9393 24 9 2.0529 2.4778 6.0141 25 9 0.2544 1.5818 4.9270 26 9 2.2042 0.4005 5.0754 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 4.1623 -0.3171 -2.5241 33 1 2.3163 0.4468 2.5551 34 1 0.6979 1.1834 2.4746 35 1 6.6626 1.5279 3.9378 36 1 6.4186 4.1222 3.6196 37 1 3.5595 5.1933 2.3194 38 1 2.6778 4.9992 3.8535 39 1 4.2920 5.7490 3.8435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581318592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = -139.580570 kcal Electronic energy + Delta-G solvation = -28922.359806 eV Core-core repulsion = 24450.845762 eV Total energy + Delta-G solvation = -4471.514045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.15818 -48.67306 -48.56479 -43.04509 -40.46885 -37.02970 -35.46688 -34.88730 -33.95868 -31.14035 -30.05242 -28.55625 -27.75860 -26.46280 -24.36559 -23.79774 -22.33587 -21.43402 -20.40778 -19.55186 -19.36886 -18.83157 -18.49651 -17.94671 -17.25402 -16.87176 -16.52266 -16.09356 -16.02082 -15.51807 -15.47131 -15.27622 -15.04119 -14.77164 -14.72003 -14.61993 -14.52996 -14.47396 -14.16322 -13.83128 -13.61381 -13.54699 -13.41822 -13.22258 -12.91084 -12.85298 -12.66902 -12.52140 -12.24688 -12.05757 -11.76062 -10.95817 -10.87685 -10.49254 -10.34484 -9.39646 -9.31922 -8.31789 -6.07872 1.00636 1.35846 1.40460 1.52254 1.55187 1.96319 2.07101 2.17338 2.28802 2.58586 2.82476 2.93637 3.03684 3.24192 3.45696 3.67541 3.77448 3.98593 4.06894 4.16692 4.30041 4.38140 4.43012 4.56320 4.65112 4.68518 4.76448 4.79782 4.86997 5.07442 5.31026 5.38280 5.47076 5.55957 5.85997 6.21575 6.24830 6.55056 7.11792 7.19367 7.48406 8.07605 8.71914 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.005266 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.544944 B = 5315.746452 C = 6233.079185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.452 5.452 4 C -0.334 4.334 5 H 0.067 0.933 6 C 0.002 3.998 7 N -0.893 5.893 8 Si 0.979 3.021 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.267 1.267 12 C 0.463 3.537 13 O -0.605 6.605 14 C -0.120 4.120 15 C -0.022 4.022 16 H 0.139 0.861 17 C 0.193 3.807 18 N -0.510 5.510 19 C -0.058 4.058 20 C -0.045 4.045 21 N -0.436 5.436 22 C 0.073 3.927 23 C 0.472 3.528 24 F -0.182 7.182 25 F -0.172 7.172 26 F -0.173 7.173 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.270 0.730 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.186 0.814 36 H 0.211 0.789 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 4.327 11.285 12.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.171 5.171 4 C -0.462 4.462 5 H 0.085 0.915 6 C -0.201 4.201 7 N -0.531 5.531 8 Si 0.803 3.197 9 H -0.191 1.191 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.252 3.748 13 O -0.490 6.490 14 C -0.160 4.160 15 C -0.044 4.044 16 H 0.156 0.844 17 C -0.069 4.069 18 N -0.229 5.229 19 C -0.207 4.207 20 C -0.179 4.179 21 N -0.116 5.116 22 C -0.069 4.069 23 C 0.417 3.583 24 F -0.163 7.163 25 F -0.153 7.153 26 F -0.154 7.154 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.203 0.797 36 H 0.227 0.773 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.309 4.044 11.260 12.413 hybrid contribution 0.531 0.721 -0.994 1.338 sum -2.779 4.765 10.266 11.654 Atomic orbital electron populations 1.22111 0.94794 1.02615 1.01654 1.21549 0.94300 0.83849 1.02689 1.43617 1.56132 1.12703 1.04607 1.19342 1.36278 0.97978 0.92587 0.91532 1.26156 0.93334 0.96649 1.03924 1.70044 1.29515 1.18448 1.35050 0.85105 0.77848 0.78745 0.78009 1.19125 1.20915 1.19147 1.20514 0.81247 0.87633 0.85399 1.90415 1.51458 1.19831 1.87325 1.21587 1.04625 0.99046 0.90781 1.20376 0.89584 1.03079 0.91334 0.84375 1.21965 0.94377 0.82303 1.08233 1.70085 1.00860 1.31528 1.20445 1.22683 0.96067 0.92715 1.09187 1.23262 0.85674 0.99266 1.09729 1.45228 1.06828 1.08711 1.50851 1.22230 1.00259 0.80675 1.03715 1.19977 0.75209 0.77036 0.86065 1.93166 1.90550 1.73689 1.58887 1.93196 1.29212 1.96160 1.96740 1.93223 1.85281 1.40611 1.96303 0.89888 0.92280 0.93562 0.90499 0.92440 0.92017 0.88639 0.85919 0.79699 0.77266 0.91187 0.88956 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 10.16 71.98 0.73 -4.39 16 2 C 0.10 4.28 5.41 86.38 0.47 4.75 16 3 N -0.45 -22.50 2.51 -635.54 -1.59 -24.09 16 4 C -0.33 -18.40 8.85 84.04 0.74 -17.66 16 5 H 0.07 3.86 7.81 -2.91 -0.02 3.84 16 6 C 0.00 0.09 4.94 84.93 0.42 0.51 16 7 N -0.89 -49.13 11.62 21.66 0.25 -48.87 16 8 Si 0.98 42.14 29.59 68.60 2.03 44.17 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 12 C 0.46 21.55 7.27 87.66 0.64 22.19 16 13 O -0.60 -30.36 13.63 -3.07 -0.04 -30.40 16 14 C -0.12 -4.34 3.61 29.85 0.11 -4.24 16 15 C -0.02 -0.73 1.83 -11.54 -0.02 -0.75 16 16 H 0.14 4.12 6.47 -2.39 -0.02 4.10 16 17 C 0.19 7.10 4.76 138.13 0.66 7.76 16 18 N -0.51 -20.29 10.70 -188.13 -2.01 -22.30 16 19 C -0.06 -1.98 11.87 83.52 0.99 -0.99 16 20 C -0.04 -1.33 11.58 83.09 0.96 -0.37 16 21 N -0.44 -14.12 3.04 -537.60 -1.63 -15.75 16 22 C 0.07 1.80 10.26 127.77 1.31 3.11 16 23 C 0.47 13.96 2.69 71.98 0.19 14.15 16 24 F -0.18 -5.27 16.93 44.97 0.76 -4.51 16 25 F -0.17 -4.51 16.86 44.97 0.76 -3.75 16 26 F -0.17 -5.67 16.09 44.97 0.72 -4.95 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 1.76 6.69 -2.38 -0.02 1.74 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.08 3.73 5.76 -2.38 -0.01 3.71 16 31 H 0.06 2.33 6.51 -2.39 -0.02 2.32 16 32 H 0.27 13.97 8.31 -92.71 -0.77 13.19 16 33 H 0.10 3.70 6.82 -2.39 -0.02 3.68 16 34 H 0.12 3.69 6.39 -2.39 -0.02 3.68 16 35 H 0.19 5.25 8.06 -2.91 -0.02 5.22 16 36 H 0.21 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.07 2.11 7.44 -2.39 -0.02 2.09 16 38 H 0.09 2.00 7.04 -2.38 -0.02 1.98 16 39 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -70.49 335.30 7.54 -62.95 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 1.10 Total: 23.42 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 7.20 Total: 24.07 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -4.99 Total: -111.01 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.04 Total: -30.40 kcal Atomic # 9 Polarization: -15.44 SS G_CDS: 2.24 Total: -13.20 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -70.49 7.54 -62.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581318592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.629 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds