Wall clock time and date at job start Tue Mar 31 2020 13:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47445 * 2 1 4 4 C 1.50706 * 109.46941 * 119.99483 * 2 1 3 5 5 H 1.07999 * 119.99544 * 120.00337 * 4 2 1 6 6 C 1.37873 * 120.00226 * 300.00002 * 4 2 1 7 7 N 1.31510 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99866 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47309 * 90.00248 * 8 6 4 10 10 H 1.48507 * 109.47230 * 209.99845 * 8 6 4 11 11 H 1.48496 * 109.47248 * 329.99871 * 8 6 4 12 12 N 1.46497 * 109.47312 * 239.99423 * 2 1 3 13 13 C 1.46499 * 120.00370 * 300.00247 * 12 2 1 14 14 C 1.34777 * 119.99651 * 119.99934 * 12 2 1 15 15 O 1.21283 * 120.00331 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99829 * 180.02562 * 14 12 2 17 17 C 1.53008 * 109.47216 * 175.48835 * 16 14 12 18 18 H 1.08998 * 109.46524 * 306.33194 * 17 16 14 19 19 N 1.46501 * 109.46846 * 66.33164 * 17 16 14 20 20 C 1.34953 * 126.03680 * 84.72030 * 19 17 16 21 21 C 1.35318 * 107.74134 * 179.83521 * 20 19 17 22 22 C 1.39864 * 107.92432 * 0.42358 * 21 20 19 23 23 N 1.30840 * 108.20032 * 359.73770 * 22 21 20 24 24 C 1.52995 * 109.46924 * 186.33450 * 17 16 14 25 25 F 1.39895 * 109.47461 * 65.86692 * 24 17 16 26 26 F 1.39902 * 109.46753 * 185.86993 * 24 17 16 27 27 F 1.39909 * 109.47104 * 305.86489 * 24 17 16 28 28 H 1.08994 * 109.47120 * 60.00029 * 1 2 3 29 29 H 1.09003 * 109.47231 * 300.00162 * 1 2 3 30 30 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00622 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47101 * 89.99643 * 13 12 2 33 33 H 1.08998 * 109.46963 * 209.99993 * 13 12 2 34 34 H 1.09003 * 109.46562 * 329.99767 * 13 12 2 35 35 H 1.08999 * 109.47033 * 295.48516 * 16 14 12 36 36 H 1.08999 * 109.47407 * 55.48622 * 16 14 12 37 37 H 1.08000 * 126.12597 * 359.97438 * 20 19 17 38 38 H 1.08004 * 126.03271 * 180.16023 * 21 20 19 39 39 H 1.07993 * 125.90257 * 179.71913 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6304 -0.5438 4.4119 10 1 1.3444 -0.9487 5.1124 11 1 2.4880 -2.5651 3.7124 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0832 15 8 3.0865 1.1253 -1.8912 16 6 3.2951 -0.7460 -3.3139 17 6 4.0505 0.2447 -4.2022 18 1 3.4164 1.1079 -4.4044 19 7 5.2691 0.6834 -3.5176 20 6 6.4556 0.0404 -3.5185 21 6 7.3206 0.7700 -2.7764 22 6 6.6368 1.8923 -2.2979 23 7 5.4069 1.8415 -2.7416 24 6 4.4230 -0.4347 -5.5215 25 9 3.2588 -0.7338 -6.2371 26 9 5.2274 0.4246 -6.2776 27 9 5.1237 -1.6162 -5.2560 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7087 1.1615 3.4843 32 1 0.7377 -2.1445 -1.9992 33 1 2.4630 -2.5819 -1.9861 34 1 1.5296 -2.5969 -0.4706 35 1 3.9651 -1.5538 -3.0193 36 1 2.4502 -1.1578 -3.8658 37 1 6.6759 -0.8886 -4.0232 38 1 8.3549 0.5262 -2.5838 39 1 7.0520 2.6669 -1.6703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597144217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:41 Heat of formation + Delta-G solvation = -91.181779 kcal Electronic energy + Delta-G solvation = -28336.983789 eV Core-core repulsion = 23867.568473 eV Total energy + Delta-G solvation = -4469.415316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.56517 -48.06919 -47.99286 -41.06094 -39.16786 -35.70405 -34.72295 -32.89625 -30.48108 -29.82977 -29.11919 -27.10063 -26.08855 -25.23607 -23.49779 -21.45190 -21.07229 -20.59366 -19.11246 -18.89566 -18.09430 -17.99652 -16.81173 -16.55276 -15.86607 -15.58596 -15.14175 -14.99486 -14.77503 -14.50472 -14.44849 -14.26646 -14.22881 -14.11319 -14.05564 -13.39904 -12.96174 -12.80392 -12.51839 -12.46646 -12.43664 -12.07381 -11.81680 -11.60976 -11.51842 -11.05570 -10.87658 -10.71898 -10.36244 -10.25408 -10.19258 -9.31106 -9.22733 -9.01226 -8.50872 -8.44080 -7.62697 -6.09248 -4.17370 1.85350 2.05412 2.43142 3.07661 3.14746 3.25382 3.27101 3.32484 3.34528 3.53458 3.82034 3.96603 4.36525 4.38155 4.61997 4.79808 5.03051 5.09438 5.22160 5.24290 5.38574 5.64218 5.67891 5.86505 5.95461 6.11720 6.30387 6.72231 6.77251 6.79629 6.98212 7.03221 7.36870 7.49934 7.68757 7.88831 7.98541 8.17201 8.46573 8.79617 8.98824 9.49058 10.96048 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.004218 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.817484 B = 6636.070400 C = 7410.456873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.081 3.919 14 C 0.501 3.499 15 O -0.516 6.516 16 C -0.163 4.163 17 C 0.145 3.855 18 H 0.150 0.850 19 N -0.369 5.369 20 C 0.030 3.970 21 C -0.259 4.259 22 C 0.032 3.968 23 N -0.223 5.223 24 C 0.452 3.548 25 F -0.167 7.167 26 F -0.170 7.170 27 F -0.175 7.175 28 H 0.011 0.989 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.173 0.827 38 H 0.147 0.853 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.227 -5.259 -15.732 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.324 5.324 13 C -0.063 4.063 14 C 0.285 3.715 15 O -0.392 6.392 16 C -0.204 4.204 17 C 0.039 3.961 18 H 0.168 0.832 19 N -0.153 5.153 20 C -0.114 4.114 21 C -0.289 4.289 22 C -0.156 4.156 23 N -0.041 5.041 24 C 0.396 3.604 25 F -0.148 7.148 26 F -0.152 7.152 27 F -0.157 7.157 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.190 0.810 38 H 0.164 0.836 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.028 -4.001 -15.576 17.174 hybrid contribution 1.151 -1.345 0.707 1.906 sum 7.179 -5.346 -14.868 17.355 Atomic orbital electron populations 1.22078 0.98169 0.99349 1.00801 1.18934 0.90796 0.94519 0.79694 0.91815 1.21289 1.31842 1.13017 0.90331 0.92404 1.24878 0.94896 0.94978 0.98943 1.69872 1.36233 1.22585 1.23782 0.86504 0.78695 0.79819 0.82413 1.20595 1.21090 1.19967 1.48196 1.48986 1.11561 1.23617 1.21622 0.98666 0.83421 1.02561 1.19770 0.80208 0.87523 0.83979 1.90829 1.56535 1.15961 1.75907 1.22263 1.01868 0.98764 0.97545 1.21882 0.86779 1.00494 0.86990 0.83242 1.48130 1.07299 1.19385 1.40473 1.22727 0.86159 0.99829 1.02646 1.21464 1.01368 0.98474 1.07566 1.24059 0.91358 0.99402 1.00784 1.77887 1.17593 1.00562 1.08033 1.20511 0.75242 0.77445 0.87217 1.93234 1.48294 1.93439 1.79845 1.93249 1.74037 1.69738 1.78151 1.93179 1.79391 1.49315 1.93797 0.97038 0.88839 0.95211 0.92661 0.93729 0.93090 0.89929 0.87499 0.86741 0.81020 0.83552 0.79954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.55 2.64 -69.08 -0.18 6.37 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.09 7.99 -34.44 -0.28 -14.37 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.59 -12.13 2.75 -175.26 -0.48 -12.61 16 13 C 0.08 1.29 9.16 59.85 0.55 1.84 16 14 C 0.50 9.75 7.56 -10.99 -0.08 9.66 16 15 O -0.52 -12.06 13.02 5.55 0.07 -11.99 16 16 C -0.16 -2.20 3.55 -27.88 -0.10 -2.30 16 17 C 0.14 1.91 2.33 -67.93 -0.16 1.75 16 18 H 0.15 2.03 7.98 -51.93 -0.41 1.62 16 19 N -0.37 -5.68 3.02 -54.86 -0.17 -5.85 16 20 C 0.03 0.39 10.24 -17.22 -0.18 0.22 16 21 C -0.26 -3.44 10.80 -40.01 -0.43 -3.87 16 22 C 0.03 0.50 12.03 -17.37 -0.21 0.29 16 23 N -0.22 -4.06 10.54 30.62 0.32 -3.74 16 24 C 0.45 4.90 2.47 37.15 0.09 4.99 16 25 F -0.17 -1.70 16.93 2.25 0.04 -1.66 16 26 F -0.17 -2.00 16.91 2.25 0.04 -1.97 16 27 F -0.18 -1.78 14.39 2.25 0.03 -1.75 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 30 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.65 6.57 -51.93 -0.34 0.30 16 34 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 35 H 0.11 1.32 7.36 -51.93 -0.38 0.94 16 36 H 0.11 1.20 7.65 -51.93 -0.40 0.81 16 37 H 0.17 1.82 6.27 -52.49 -0.33 1.49 16 38 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 39 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -32.35 334.33 -4.75 -37.10 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.51 Total: 2.68 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.74 Total: 3.17 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.30 Total: -46.60 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.11 Total: -5.37 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.35 -4.75 -37.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.086 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds