Wall clock time and date at job start Tue Mar 31 2020 13:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47445 * 2 1 4 4 C 1.50706 * 109.46941 * 119.99483 * 2 1 3 5 5 H 1.07999 * 119.99544 * 120.00337 * 4 2 1 6 6 C 1.37873 * 120.00226 * 300.00002 * 4 2 1 7 7 N 1.31510 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99866 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47309 * 90.00248 * 8 6 4 10 10 H 1.48507 * 109.47230 * 209.99845 * 8 6 4 11 11 H 1.48496 * 109.47248 * 329.99871 * 8 6 4 12 12 N 1.46497 * 109.47312 * 239.99423 * 2 1 3 13 13 C 1.46499 * 120.00370 * 300.00247 * 12 2 1 14 14 C 1.34777 * 119.99651 * 119.99934 * 12 2 1 15 15 O 1.21283 * 120.00331 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99829 * 180.02562 * 14 12 2 17 17 C 1.53008 * 109.47216 * 175.48835 * 16 14 12 18 18 H 1.08998 * 109.46524 * 306.33194 * 17 16 14 19 19 N 1.46501 * 109.46846 * 66.33164 * 17 16 14 20 20 C 1.34953 * 126.03680 * 84.72030 * 19 17 16 21 21 C 1.35318 * 107.74134 * 179.83521 * 20 19 17 22 22 C 1.39864 * 107.92432 * 0.42358 * 21 20 19 23 23 N 1.30840 * 108.20032 * 359.73770 * 22 21 20 24 24 C 1.52995 * 109.46924 * 186.33450 * 17 16 14 25 25 F 1.39895 * 109.47461 * 65.86692 * 24 17 16 26 26 F 1.39902 * 109.46753 * 185.86993 * 24 17 16 27 27 F 1.39909 * 109.47104 * 305.86489 * 24 17 16 28 28 H 1.08994 * 109.47120 * 60.00029 * 1 2 3 29 29 H 1.09003 * 109.47231 * 300.00162 * 1 2 3 30 30 H 1.08998 * 109.46925 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00622 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47101 * 89.99643 * 13 12 2 33 33 H 1.08998 * 109.46963 * 209.99993 * 13 12 2 34 34 H 1.09003 * 109.46562 * 329.99767 * 13 12 2 35 35 H 1.08999 * 109.47033 * 295.48516 * 16 14 12 36 36 H 1.08999 * 109.47407 * 55.48622 * 16 14 12 37 37 H 1.08000 * 126.12597 * 359.97438 * 20 19 17 38 38 H 1.08004 * 126.03271 * 180.16023 * 21 20 19 39 39 H 1.07993 * 125.90257 * 179.71913 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.6304 -0.5438 4.4119 10 1 1.3444 -0.9487 5.1124 11 1 2.4880 -2.5651 3.7124 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0832 15 8 3.0865 1.1253 -1.8912 16 6 3.2951 -0.7460 -3.3139 17 6 4.0505 0.2447 -4.2022 18 1 3.4164 1.1079 -4.4044 19 7 5.2691 0.6834 -3.5176 20 6 6.4556 0.0404 -3.5185 21 6 7.3206 0.7700 -2.7764 22 6 6.6368 1.8923 -2.2979 23 7 5.4069 1.8415 -2.7416 24 6 4.4230 -0.4347 -5.5215 25 9 3.2588 -0.7338 -6.2371 26 9 5.2274 0.4246 -6.2776 27 9 5.1237 -1.6162 -5.2560 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7087 1.1615 3.4843 32 1 0.7377 -2.1445 -1.9992 33 1 2.4630 -2.5819 -1.9861 34 1 1.5296 -2.5969 -0.4706 35 1 3.9651 -1.5538 -3.0193 36 1 2.4502 -1.1578 -3.8658 37 1 6.6759 -0.8886 -4.0232 38 1 8.3549 0.5262 -2.5838 39 1 7.0520 2.6669 -1.6703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:40 Heat of formation + Delta-G solvation = -111.337399 kcal Electronic energy + Delta-G solvation = -28337.857802 eV Core-core repulsion = 23867.568473 eV Total energy + Delta-G solvation = -4470.289329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.42164 -48.88995 -48.86874 -42.16497 -40.67868 -37.29531 -35.99693 -34.79261 -31.96387 -31.11055 -30.43850 -28.21429 -27.48565 -27.29162 -24.56605 -23.03310 -22.14605 -21.79963 -20.27701 -19.79566 -19.39332 -18.98737 -18.47791 -17.99966 -17.25520 -17.01613 -16.63823 -16.07507 -15.84798 -15.75877 -15.57084 -15.41678 -15.20280 -14.98787 -14.97605 -14.75305 -14.35261 -14.32295 -13.91088 -13.70271 -13.49605 -13.45967 -13.18210 -13.03005 -12.98609 -12.81706 -12.68447 -12.59904 -12.19083 -12.10348 -11.47101 -11.19489 -10.67105 -10.47912 -10.44815 -9.58246 -9.28291 -8.15212 -6.31621 0.84257 1.02549 1.39533 1.40912 1.44076 1.50665 1.81898 1.98956 2.14385 2.37742 2.52115 2.72835 2.95160 3.12953 3.30591 3.58671 3.79920 3.81421 4.07178 4.23297 4.31832 4.51230 4.63384 4.75457 4.77239 4.84966 4.90076 5.04541 5.07875 5.11115 5.47661 5.59909 5.66831 5.68717 6.00480 6.04485 6.16890 6.76498 6.78005 6.83520 7.32760 7.50131 8.88908 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.004218 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.817484 B = 6636.070400 C = 7410.456873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.266 3.734 3 H 0.006 0.994 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.284 1.284 10 H -0.280 1.280 11 H -0.261 1.261 12 N -0.602 5.602 13 C 0.077 3.923 14 C 0.489 3.511 15 O -0.564 6.564 16 C -0.147 4.147 17 C 0.138 3.862 18 H 0.138 0.862 19 N -0.376 5.376 20 C 0.031 3.969 21 C -0.264 4.264 22 C 0.019 3.981 23 N -0.284 5.284 24 C 0.470 3.530 25 F -0.158 7.158 26 F -0.175 7.175 27 F -0.165 7.165 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.203 0.797 38 H 0.176 0.824 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.091 -8.195 -17.028 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.210 1.210 10 H -0.206 1.206 11 H -0.185 1.185 12 N -0.334 5.334 13 C -0.066 4.066 14 C 0.277 3.723 15 O -0.443 6.443 16 C -0.188 4.188 17 C 0.032 3.968 18 H 0.156 0.844 19 N -0.160 5.160 20 C -0.112 4.112 21 C -0.293 4.293 22 C -0.169 4.169 23 N -0.103 5.103 24 C 0.415 3.585 25 F -0.139 7.139 26 F -0.156 7.156 27 F -0.147 7.147 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.220 0.780 38 H 0.193 0.807 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.890 -6.979 -16.903 19.542 hybrid contribution 0.900 -0.397 1.076 1.457 sum 7.790 -7.377 -15.827 19.121 Atomic orbital electron populations 1.21848 0.97203 1.00026 0.99816 1.18446 0.91452 0.92052 0.81639 0.97583 1.21564 1.31691 1.12960 0.91243 0.92301 1.25718 0.95097 0.95652 1.02006 1.70022 1.37336 1.23948 1.24351 0.85496 0.77736 0.79278 0.78753 1.21018 1.20558 1.18462 1.48172 1.49318 1.13379 1.22503 1.21879 1.01404 0.80581 1.02690 1.20732 0.79149 0.87255 0.85207 1.90820 1.57858 1.18397 1.77194 1.22205 1.03400 0.98336 0.94830 1.21956 0.86386 1.00377 0.88076 0.84427 1.48255 1.08387 1.19022 1.40375 1.23283 0.85325 1.00461 1.02170 1.21860 1.02716 0.97566 1.07115 1.24512 0.91084 1.00582 1.00672 1.77811 1.19342 1.02936 1.10257 1.19942 0.75390 0.77296 0.85916 1.93260 1.47888 1.93315 1.79480 1.93248 1.74192 1.70111 1.78068 1.93199 1.79189 1.48571 1.93703 0.96098 0.91711 0.93468 0.92717 0.91203 0.89182 0.91574 0.85505 0.82959 0.78043 0.80689 0.78569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.97 71.98 0.65 -5.60 16 2 C 0.27 13.75 2.64 44.25 0.12 13.86 16 3 H 0.01 0.39 6.90 -2.39 -0.02 0.37 16 4 C -0.54 -29.07 7.99 25.60 0.20 -28.87 16 5 H 0.06 3.10 7.33 -2.91 -0.02 3.08 16 6 C 0.01 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16 8 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 12 N -0.60 -24.31 2.75 -826.80 -2.28 -26.59 16 13 C 0.08 2.22 9.16 127.77 1.17 3.39 16 14 C 0.49 18.87 7.56 87.66 0.66 19.53 16 15 O -0.56 -27.38 13.02 -3.04 -0.04 -27.42 16 16 C -0.15 -3.56 3.55 29.85 0.11 -3.45 16 17 C 0.14 3.42 2.33 44.99 0.11 3.53 16 18 H 0.14 3.74 7.98 -2.39 -0.02 3.72 16 19 N -0.38 -11.27 3.02 -327.48 -0.99 -12.26 16 20 C 0.03 0.75 10.24 83.54 0.86 1.60 16 21 C -0.26 -6.60 10.80 21.99 0.24 -6.36 16 22 C 0.02 0.59 12.03 85.23 1.02 1.61 16 23 N -0.28 -10.66 10.54 -57.03 -0.60 -11.27 16 24 C 0.47 8.85 2.47 71.98 0.18 9.03 16 25 F -0.16 -2.69 16.93 44.97 0.76 -1.93 16 26 F -0.17 -3.74 16.91 44.97 0.76 -2.98 16 27 F -0.17 -2.69 14.39 44.97 0.65 -2.04 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 30 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.88 6.57 -2.39 -0.02 1.86 16 34 H 0.07 2.15 7.02 -2.39 -0.02 2.13 16 35 H 0.13 2.61 7.36 -2.39 -0.02 2.59 16 36 H 0.15 2.52 7.65 -2.39 -0.02 2.50 16 37 H 0.20 3.52 6.27 -2.91 -0.02 3.51 16 38 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.20 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -74.46 334.33 7.37 -67.09 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.09 Total: 15.73 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.76 Total: 9.54 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -3.62 Total: -103.21 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.04 Total: -27.42 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 2.17 Total: -6.95 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -74.46 7.37 -67.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.250 kcal (2) G-P(sol) polarization free energy of solvation -74.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds