Wall clock time and date at job start Tue Mar 31 2020 13:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46467 * 2 1 4 4 C 1.50699 * 109.47273 * 240.00079 * 2 1 3 5 5 H 1.08000 * 120.00358 * 275.12026 * 4 2 1 6 6 C 1.37881 * 119.99730 * 95.11219 * 4 2 1 7 7 N 1.31515 * 119.99469 * 179.89469 * 6 4 2 8 8 Si 1.86796 * 120.00000 * 359.90142 * 6 4 2 9 9 H 1.48508 * 109.47124 * 86.59594 * 8 6 4 10 10 H 1.48507 * 109.46900 * 206.59310 * 8 6 4 11 11 H 1.48492 * 109.47346 * 326.59229 * 8 6 4 12 12 N 1.46497 * 109.46776 * 119.99936 * 2 1 3 13 13 C 1.46499 * 119.99756 * 60.00491 * 12 2 1 14 14 C 1.34774 * 120.00083 * 240.00080 * 12 2 1 15 15 O 1.21286 * 119.99691 * 0.02562 * 14 12 2 16 16 C 1.50698 * 120.00137 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.47220 * 173.71225 * 16 14 12 18 18 H 1.08993 * 109.47181 * 54.00026 * 17 16 14 19 19 N 1.46498 * 109.46918 * 294.00300 * 17 16 14 20 20 C 1.34948 * 126.03701 * 274.71774 * 19 17 16 21 21 C 1.35320 * 107.74539 * 179.83955 * 20 19 17 22 22 C 1.39872 * 107.91762 * 0.42182 * 21 20 19 23 23 N 1.30831 * 108.20334 * 359.73795 * 22 21 20 24 24 C 1.53000 * 109.46997 * 174.00735 * 17 16 14 25 25 F 1.39897 * 109.47409 * 54.32686 * 24 17 16 26 26 F 1.39905 * 109.46810 * 174.33082 * 24 17 16 27 27 F 1.39906 * 109.47004 * 294.32559 * 24 17 16 28 28 H 1.09003 * 109.47304 * 55.16057 * 1 2 3 29 29 H 1.09006 * 109.46899 * 175.15624 * 1 2 3 30 30 H 1.08995 * 109.47628 * 295.16164 * 1 2 3 31 31 H 0.96997 * 119.99355 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47502 * 269.99003 * 13 12 2 33 33 H 1.08997 * 109.47402 * 29.99759 * 13 12 2 34 34 H 1.09010 * 109.47023 * 149.99781 * 13 12 2 35 35 H 1.08998 * 109.47368 * 53.71007 * 16 14 12 36 36 H 1.09002 * 109.46938 * 293.70905 * 16 14 12 37 37 H 1.07995 * 126.13037 * 359.97438 * 20 19 17 38 38 H 1.08001 * 126.04431 * 180.15980 * 21 20 19 39 39 H 1.08006 * 125.89631 * 179.71800 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1338 -1.7856 -1.2297 6 6 2.3626 0.0124 -2.3573 7 7 2.8029 -0.6074 -3.4303 8 14 2.1845 1.8719 -2.3595 9 1 3.4216 2.4883 -1.8164 10 1 1.9640 2.3463 -3.7494 11 1 1.0263 2.2593 -1.5147 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0834 15 8 3.0857 1.1257 1.8917 16 6 3.2958 -0.7462 3.3136 17 6 4.2706 0.1627 4.0650 18 1 3.7926 1.1216 4.2650 19 7 5.4684 0.3750 3.2486 20 6 6.5467 -0.4346 3.1955 21 6 7.4286 0.1096 2.3253 22 6 6.8742 1.2973 1.8370 23 7 5.6992 1.4573 2.3898 24 6 4.6655 -0.4962 5.3881 25 9 5.1605 -1.7809 5.1399 26 9 5.6533 0.2712 6.0147 27 9 3.5437 -0.5814 6.2198 28 1 -0.3634 0.5871 -0.8435 29 1 -0.3633 -1.0241 -0.0868 30 1 -0.3634 0.4369 0.9301 31 1 3.0355 -0.0988 -4.2229 32 1 0.7376 -2.1445 1.9993 33 1 1.5295 -2.5968 0.4707 34 1 2.4629 -2.5819 1.9863 35 1 3.8068 -1.6632 3.0202 36 1 2.4540 -0.9906 3.9615 37 1 6.6809 -1.3535 3.7469 38 1 8.3923 -0.2985 2.0585 39 1 7.3364 1.9668 1.1266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597144219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:46 Heat of formation + Delta-G solvation = -92.473963 kcal Electronic energy + Delta-G solvation = -28567.299974 eV Core-core repulsion = 24097.828625 eV Total energy + Delta-G solvation = -4469.471349 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.57820 -48.08225 -48.00510 -41.07505 -39.28569 -35.80921 -34.78441 -32.73738 -30.87551 -30.04474 -29.39974 -27.19539 -26.21861 -25.26718 -23.52148 -21.43848 -21.08340 -20.54571 -19.09953 -18.90492 -18.12877 -18.02366 -17.21204 -16.79712 -15.78775 -15.71526 -15.36239 -15.00680 -14.79168 -14.51521 -14.46232 -14.27453 -14.15754 -14.09912 -14.04681 -13.36272 -13.11867 -12.74697 -12.59859 -12.48677 -12.47572 -12.30317 -12.08360 -11.98136 -11.62663 -11.39213 -11.10556 -10.70880 -10.44677 -10.37045 -9.82065 -9.34513 -9.30815 -9.10979 -8.65081 -8.51966 -7.72408 -6.18885 -4.21658 1.83659 2.04540 2.40874 3.07298 3.10828 3.20640 3.30950 3.37864 3.44861 3.51276 3.79526 3.87130 4.33935 4.37304 4.61207 4.79148 4.94988 5.07278 5.19435 5.24353 5.33976 5.64409 5.65817 5.86997 5.87735 6.12348 6.21418 6.28639 6.35321 6.53792 6.76227 6.88709 6.97673 7.02153 7.43348 7.59790 7.86795 8.05935 8.45125 8.80371 8.85066 9.43495 10.92930 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.004935 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.055389 B = 5672.814381 C = 6540.483938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.226 3.774 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.077 0.923 6 C 0.081 3.919 7 N -0.891 5.891 8 Si 0.875 3.125 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.586 5.586 13 C 0.080 3.920 14 C 0.504 3.496 15 O -0.525 6.525 16 C -0.163 4.163 17 C 0.144 3.856 18 H 0.152 0.848 19 N -0.372 5.372 20 C 0.032 3.968 21 C -0.257 4.257 22 C 0.037 3.963 23 N -0.232 5.232 24 C 0.452 3.548 25 F -0.175 7.175 26 F -0.170 7.170 27 F -0.167 7.167 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.026 0.974 31 H 0.266 0.734 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 -2.625 17.593 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.126 3.874 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.095 0.905 6 C -0.123 4.123 7 N -0.528 5.528 8 Si 0.702 3.298 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.318 5.318 13 C -0.064 4.064 14 C 0.289 3.711 15 O -0.401 6.401 16 C -0.204 4.204 17 C 0.038 3.962 18 H 0.169 0.831 19 N -0.155 5.155 20 C -0.111 4.111 21 C -0.286 4.286 22 C -0.152 4.152 23 N -0.050 5.050 24 C 0.396 3.604 25 F -0.156 7.156 26 F -0.152 7.152 27 F -0.148 7.148 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.191 0.809 38 H 0.166 0.834 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.126 -1.285 17.453 17.777 hybrid contribution 0.756 -0.069 -0.039 0.760 sum 3.882 -1.354 17.415 17.893 Atomic orbital electron populations 1.22234 0.98356 1.00838 0.99148 1.19266 0.90626 0.94896 0.82662 0.91772 1.21091 1.44755 0.95568 0.94974 0.90502 1.24944 0.93508 0.98500 0.95366 1.69886 1.43236 1.36242 1.03438 0.86894 0.79994 0.85993 0.76946 1.19507 1.21401 1.18831 1.48259 1.49063 1.11611 1.22868 1.21665 0.98804 0.83194 1.02723 1.19794 0.79936 0.87393 0.83927 1.90783 1.56879 1.16318 1.76152 1.22259 0.99725 0.99873 0.98555 1.21893 0.85769 1.03324 0.85251 0.83080 1.48143 1.12979 1.19143 1.35284 1.22740 0.88417 0.98014 1.01964 1.21480 1.02934 0.99342 1.04885 1.24067 0.92632 0.98093 1.00372 1.77845 1.16172 1.05436 1.05583 1.20503 0.75401 0.77231 0.87258 1.93180 1.87835 1.40495 1.94106 1.93251 1.62704 1.75044 1.84165 1.93235 1.51711 1.96146 1.73754 0.92578 0.93200 0.95541 0.92379 0.93648 0.89820 0.92722 0.87379 0.86470 0.80906 0.83421 0.79918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.07 37.16 0.34 -2.70 16 2 C 0.23 5.34 2.23 -69.08 -0.15 5.19 16 3 H 0.06 1.69 4.24 -51.93 -0.22 1.47 16 4 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 5 H 0.08 2.21 6.82 -52.49 -0.36 1.85 16 6 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 7 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 8 Si 0.87 22.27 26.64 -169.99 -4.53 17.74 16 9 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.44 6.49 56.52 0.37 -6.08 16 12 N -0.59 -11.68 2.75 -175.26 -0.48 -12.16 16 13 C 0.08 1.24 9.41 59.85 0.56 1.80 16 14 C 0.50 9.62 7.50 -10.99 -0.08 9.54 16 15 O -0.52 -11.98 13.42 5.55 0.07 -11.90 16 16 C -0.16 -2.16 3.81 -27.88 -0.11 -2.26 16 17 C 0.14 1.89 2.33 -67.93 -0.16 1.73 16 18 H 0.15 2.04 7.82 -51.93 -0.41 1.63 16 19 N -0.37 -5.80 3.07 -54.87 -0.17 -5.97 16 20 C 0.03 0.43 10.22 -17.22 -0.18 0.26 16 21 C -0.26 -3.55 10.80 -40.01 -0.43 -3.99 16 22 C 0.04 0.59 12.03 -17.37 -0.21 0.38 16 23 N -0.23 -4.33 10.93 30.63 0.33 -3.99 16 24 C 0.45 4.87 2.47 37.16 0.09 4.96 16 25 F -0.17 -1.77 14.37 2.25 0.03 -1.74 16 26 F -0.17 -2.00 16.91 2.25 0.04 -1.96 16 27 F -0.17 -1.67 16.93 2.25 0.04 -1.63 16 28 H 0.06 1.19 7.43 -51.93 -0.39 0.80 16 29 H 0.05 0.95 7.83 -51.93 -0.41 0.55 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.44 6.56 -51.93 -0.34 1.10 16 34 H 0.05 0.69 6.27 -51.92 -0.33 0.37 16 35 H 0.11 1.33 6.78 -51.93 -0.35 0.98 16 36 H 0.12 1.17 7.81 -51.93 -0.41 0.77 16 37 H 0.17 1.87 6.25 -52.49 -0.33 1.54 16 38 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.18 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -33.94 332.29 -3.99 -37.93 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.39 Total: 2.14 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.72 Total: 2.51 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.46 Total: -48.10 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.11 Total: -5.33 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.53 Total: 17.74 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.94 -3.99 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.541 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds