Wall clock time and date at job start Tue Mar 31 2020 13:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46467 * 2 1 4 4 C 1.50699 * 109.47273 * 240.00079 * 2 1 3 5 5 H 1.08000 * 120.00358 * 275.12026 * 4 2 1 6 6 C 1.37881 * 119.99730 * 95.11219 * 4 2 1 7 7 N 1.31515 * 119.99469 * 179.89469 * 6 4 2 8 8 Si 1.86796 * 120.00000 * 359.90142 * 6 4 2 9 9 H 1.48508 * 109.47124 * 86.59594 * 8 6 4 10 10 H 1.48507 * 109.46900 * 206.59310 * 8 6 4 11 11 H 1.48492 * 109.47346 * 326.59229 * 8 6 4 12 12 N 1.46497 * 109.46776 * 119.99936 * 2 1 3 13 13 C 1.46499 * 119.99756 * 60.00491 * 12 2 1 14 14 C 1.34774 * 120.00083 * 240.00080 * 12 2 1 15 15 O 1.21286 * 119.99691 * 0.02562 * 14 12 2 16 16 C 1.50698 * 120.00137 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.47220 * 173.71225 * 16 14 12 18 18 H 1.08993 * 109.47181 * 54.00026 * 17 16 14 19 19 N 1.46498 * 109.46918 * 294.00300 * 17 16 14 20 20 C 1.34948 * 126.03701 * 274.71774 * 19 17 16 21 21 C 1.35320 * 107.74539 * 179.83955 * 20 19 17 22 22 C 1.39872 * 107.91762 * 0.42182 * 21 20 19 23 23 N 1.30831 * 108.20334 * 359.73795 * 22 21 20 24 24 C 1.53000 * 109.46997 * 174.00735 * 17 16 14 25 25 F 1.39897 * 109.47409 * 54.32686 * 24 17 16 26 26 F 1.39905 * 109.46810 * 174.33082 * 24 17 16 27 27 F 1.39906 * 109.47004 * 294.32559 * 24 17 16 28 28 H 1.09003 * 109.47304 * 55.16057 * 1 2 3 29 29 H 1.09006 * 109.46899 * 175.15624 * 1 2 3 30 30 H 1.08995 * 109.47628 * 295.16164 * 1 2 3 31 31 H 0.96997 * 119.99355 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47502 * 269.99003 * 13 12 2 33 33 H 1.08997 * 109.47402 * 29.99759 * 13 12 2 34 34 H 1.09010 * 109.47023 * 149.99781 * 13 12 2 35 35 H 1.08998 * 109.47368 * 53.71007 * 16 14 12 36 36 H 1.09002 * 109.46938 * 293.70905 * 16 14 12 37 37 H 1.07995 * 126.13037 * 359.97438 * 20 19 17 38 38 H 1.08001 * 126.04431 * 180.15980 * 21 20 19 39 39 H 1.08006 * 125.89631 * 179.71800 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1338 -1.7856 -1.2297 6 6 2.3626 0.0124 -2.3573 7 7 2.8029 -0.6074 -3.4303 8 14 2.1845 1.8719 -2.3595 9 1 3.4216 2.4883 -1.8164 10 1 1.9640 2.3463 -3.7494 11 1 1.0263 2.2593 -1.5147 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0356 2.0834 15 8 3.0857 1.1257 1.8917 16 6 3.2958 -0.7462 3.3136 17 6 4.2706 0.1627 4.0650 18 1 3.7926 1.1216 4.2650 19 7 5.4684 0.3750 3.2486 20 6 6.5467 -0.4346 3.1955 21 6 7.4286 0.1096 2.3253 22 6 6.8742 1.2973 1.8370 23 7 5.6992 1.4573 2.3898 24 6 4.6655 -0.4962 5.3881 25 9 5.1605 -1.7809 5.1399 26 9 5.6533 0.2712 6.0147 27 9 3.5437 -0.5814 6.2198 28 1 -0.3634 0.5871 -0.8435 29 1 -0.3633 -1.0241 -0.0868 30 1 -0.3634 0.4369 0.9301 31 1 3.0355 -0.0988 -4.2229 32 1 0.7376 -2.1445 1.9993 33 1 1.5295 -2.5968 0.4707 34 1 2.4629 -2.5819 1.9863 35 1 3.8068 -1.6632 3.0202 36 1 2.4540 -0.9906 3.9615 37 1 6.6809 -1.3535 3.7469 38 1 8.3923 -0.2985 2.0585 39 1 7.3364 1.9668 1.1266 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597144219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:46 Heat of formation + Delta-G solvation = -114.953519 kcal Electronic energy + Delta-G solvation = -28568.274761 eV Core-core repulsion = 24097.828625 eV Total energy + Delta-G solvation = -4470.446135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.42433 -48.89261 -48.87144 -42.20526 -40.76082 -37.35233 -36.03171 -34.72016 -32.54215 -31.26470 -30.57063 -28.26347 -27.57583 -27.25631 -24.58049 -22.93856 -22.18894 -21.76814 -20.25112 -19.80068 -19.46512 -19.20156 -18.92845 -18.06234 -17.21124 -17.03829 -16.78830 -16.00599 -15.88429 -15.78280 -15.58485 -15.43117 -15.20923 -14.99801 -14.97843 -14.80805 -14.48770 -14.32339 -14.20191 -13.98455 -13.63668 -13.52237 -13.38896 -13.14725 -13.07371 -12.96881 -12.77519 -12.60099 -12.24739 -11.84300 -11.54098 -11.26660 -10.84635 -10.67408 -10.50462 -9.62563 -9.31444 -8.39048 -6.42337 0.80502 1.00312 1.23983 1.31540 1.38018 1.40995 1.76854 1.93970 2.12177 2.25466 2.43881 2.68942 2.94547 3.04792 3.29630 3.58549 3.76303 3.78946 4.03259 4.22681 4.27503 4.48409 4.50464 4.59833 4.67555 4.73008 4.81768 4.83830 5.00308 5.07578 5.15022 5.32948 5.54089 5.63204 5.81717 5.96891 6.13345 6.63267 6.71890 6.74842 7.23074 7.38518 8.76303 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.004935 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.055389 B = 5672.814381 C = 6540.483938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.226 3.774 3 H 0.036 0.964 4 C -0.517 4.517 5 H 0.054 0.946 6 C 0.030 3.970 7 N -0.935 5.935 8 Si 0.925 3.075 9 H -0.290 1.290 10 H -0.278 1.278 11 H -0.249 1.249 12 N -0.598 5.598 13 C 0.076 3.924 14 C 0.495 3.505 15 O -0.568 6.568 16 C -0.150 4.150 17 C 0.136 3.864 18 H 0.143 0.857 19 N -0.378 5.378 20 C 0.034 3.966 21 C -0.264 4.264 22 C 0.021 3.979 23 N -0.290 5.290 24 C 0.470 3.530 25 F -0.166 7.166 26 F -0.175 7.175 27 F -0.157 7.157 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.267 0.733 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.159 0.841 37 H 0.204 0.796 38 H 0.175 0.825 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -3.889 20.099 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.124 3.876 3 H 0.054 0.946 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.170 4.170 7 N -0.574 5.574 8 Si 0.751 3.249 9 H -0.216 1.216 10 H -0.204 1.204 11 H -0.173 1.173 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.282 3.718 15 O -0.448 6.448 16 C -0.190 4.190 17 C 0.031 3.969 18 H 0.160 0.840 19 N -0.162 5.162 20 C -0.109 4.109 21 C -0.293 4.293 22 C -0.167 4.167 23 N -0.110 5.110 24 C 0.414 3.586 25 F -0.147 7.147 26 F -0.157 7.157 27 F -0.139 7.139 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.177 0.823 37 H 0.221 0.779 38 H 0.192 0.808 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.623 -2.576 19.989 20.325 hybrid contribution 0.931 0.249 -0.742 1.216 sum 3.554 -2.327 19.247 19.710 Atomic orbital electron populations 1.22075 0.95832 1.01822 0.99970 1.18998 0.92453 0.93262 0.82921 0.94614 1.21370 1.43222 0.94682 0.96263 0.92829 1.25588 0.94058 1.01868 0.95440 1.69984 1.45671 1.37548 1.04220 0.86100 0.79446 0.82012 0.77354 1.21623 1.20356 1.17266 1.48184 1.49473 1.13339 1.21919 1.21902 1.01711 0.80519 1.02477 1.20680 0.78797 0.87159 0.85145 1.90773 1.58024 1.18561 1.77407 1.22235 1.01117 0.99310 0.96316 1.22008 0.85307 1.03389 0.86202 0.83967 1.48297 1.13985 1.18785 1.35109 1.23286 0.87578 0.98440 1.01597 1.21868 1.04134 0.98599 1.04726 1.24495 0.92415 0.99293 1.00481 1.77759 1.17749 1.07800 1.07655 1.19948 0.75447 0.77117 0.86052 1.93199 1.87739 1.39753 1.94028 1.93249 1.62964 1.75361 1.84083 1.93263 1.51232 1.96087 1.73282 0.93545 0.91816 0.93223 0.92363 0.90198 0.92178 0.89532 0.85744 0.82346 0.77913 0.80779 0.78742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 9.07 71.98 0.65 -4.82 16 2 C 0.23 10.58 2.23 44.25 0.10 10.68 16 3 H 0.04 1.89 4.24 -2.39 -0.01 1.88 16 4 C -0.52 -28.48 8.73 25.60 0.22 -28.26 16 5 H 0.05 3.15 6.82 -2.91 -0.02 3.13 16 6 C 0.03 1.74 5.47 84.66 0.46 2.21 16 7 N -0.93 -57.55 13.96 21.45 0.30 -57.25 16 8 Si 0.92 47.04 26.64 68.60 1.83 48.86 16 9 H -0.29 -15.53 7.11 99.48 0.71 -14.83 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.25 -11.90 6.49 99.48 0.65 -11.25 16 12 N -0.60 -22.81 2.75 -826.78 -2.28 -25.09 16 13 C 0.08 2.12 9.41 127.77 1.20 3.33 16 14 C 0.49 18.09 7.50 87.66 0.66 18.75 16 15 O -0.57 -26.02 13.42 -3.05 -0.04 -26.07 16 16 C -0.15 -3.46 3.81 29.85 0.11 -3.35 16 17 C 0.14 3.30 2.33 44.99 0.11 3.40 16 18 H 0.14 3.71 7.82 -2.39 -0.02 3.69 16 19 N -0.38 -11.32 3.07 -327.50 -1.00 -12.32 16 20 C 0.03 0.86 10.22 83.54 0.85 1.71 16 21 C -0.26 -6.95 10.80 21.99 0.24 -6.71 16 22 C 0.02 0.66 12.03 85.24 1.02 1.68 16 23 N -0.29 -10.95 10.93 -57.02 -0.62 -11.58 16 24 C 0.47 8.62 2.47 71.98 0.18 8.80 16 25 F -0.17 -2.68 14.37 44.97 0.65 -2.03 16 26 F -0.18 -3.69 16.91 44.97 0.76 -2.93 16 27 F -0.16 -2.55 16.93 44.97 0.76 -1.79 16 28 H 0.05 1.89 7.43 -2.39 -0.02 1.88 16 29 H 0.06 2.31 7.83 -2.38 -0.02 2.29 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 1.98 6.56 -2.39 -0.02 1.96 16 34 H 0.09 1.84 6.27 -2.38 -0.01 1.83 16 35 H 0.12 2.52 6.78 -2.39 -0.02 2.50 16 36 H 0.16 2.35 7.81 -2.39 -0.02 2.33 16 37 H 0.20 3.67 6.25 -2.91 -0.02 3.65 16 38 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 39 H 0.20 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -76.85 332.29 7.20 -69.65 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.03 Total: 13.11 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.81 Total: 7.42 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.60 Total: -106.24 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.04 Total: -26.07 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 2.17 Total: -6.75 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.83 Total: 48.86 kcal Total: -76.85 7.20 -69.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597144219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.299 kcal (2) G-P(sol) polarization free energy of solvation -76.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds