Wall clock time and date at job start Tue Mar 31 2020 12:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47218 * 2 1 4 4 H 1.09009 * 109.46615 * 304.99916 * 3 2 1 5 5 C 1.50697 * 109.47009 * 185.00300 * 3 2 1 6 6 H 1.08005 * 119.99698 * 239.99051 * 5 3 2 7 7 C 1.37877 * 120.00457 * 59.99709 * 5 3 2 8 8 N 1.31509 * 119.99724 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00112 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47246 * 59.99861 * 9 7 5 11 11 H 1.48496 * 109.46840 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47020 * 299.99567 * 9 7 5 13 13 N 1.46501 * 109.47191 * 64.99791 * 3 2 1 14 14 C 1.34779 * 120.00120 * 274.99693 * 13 3 2 15 15 O 1.21278 * 119.99858 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99930 * 179.97438 * 14 13 3 17 17 C 1.52995 * 109.46746 * 173.99610 * 16 14 13 18 18 H 1.08994 * 109.47380 * 54.00533 * 17 16 14 19 19 N 1.46502 * 109.47372 * 293.99930 * 17 16 14 20 20 C 1.34947 * 126.03726 * 274.71629 * 19 17 16 21 21 C 1.35314 * 107.74614 * 179.83865 * 20 19 17 22 22 C 1.39867 * 107.91698 * 0.42640 * 21 20 19 23 23 N 1.30843 * 108.20580 * 359.73650 * 22 21 20 24 24 C 1.53004 * 109.46691 * 174.00124 * 17 16 14 25 25 F 1.39898 * 109.47432 * 54.28325 * 24 17 16 26 26 F 1.39905 * 109.47151 * 174.28219 * 24 17 16 27 27 F 1.39905 * 109.47226 * 294.27921 * 24 17 16 28 28 H 1.09002 * 109.47493 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47384 * 299.99815 * 1 2 3 30 30 H 1.09000 * 109.47547 * 59.99986 * 1 2 3 31 31 H 1.08993 * 109.46942 * 239.99595 * 2 1 3 32 32 H 1.08998 * 109.46809 * 119.99986 * 2 1 3 33 33 H 0.96998 * 120.00450 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99471 * 95.00712 * 13 3 2 35 35 H 1.09003 * 109.46649 * 54.00115 * 16 14 13 36 36 H 1.09001 * 109.47035 * 294.00020 * 16 14 13 37 37 H 1.08002 * 126.12178 * 0.02562 * 20 19 17 38 38 H 1.07992 * 126.04056 * 180.16076 * 21 20 19 39 39 H 1.08001 * 125.90051 * 179.71483 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9814 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8798 -1.3812 10 1 6.5966 0.1451 -0.2343 11 1 6.3977 0.2165 -2.6504 12 1 6.5004 2.2797 -1.3809 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3396 2.6320 0.4343 16 6 0.0362 3.3377 2.6548 17 6 -1.3196 4.0229 2.4733 18 1 -2.0455 3.2996 2.1021 19 7 -1.1876 5.1200 1.5114 20 6 -0.7921 6.3792 1.7926 21 6 -0.7989 7.0816 0.6361 22 6 -1.2221 6.2249 -0.3852 23 7 -1.4554 5.0487 0.1383 24 6 -1.7945 4.5779 3.8177 25 9 -0.8042 5.4063 4.3564 26 9 -2.9681 5.3159 3.6293 27 9 -2.0457 3.5189 4.6969 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8291 -0.0605 -2.9503 34 1 2.2720 2.1232 1.9977 35 1 0.7863 4.0817 2.9232 36 1 -0.0363 2.5926 3.4470 37 1 -0.5163 6.7575 2.7659 38 1 -0.5297 8.1213 0.5226 39 1 -1.3369 6.4887 -1.4262 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:45 Heat of formation + Delta-G solvation = -105.944723 kcal Electronic energy + Delta-G solvation = -28206.833197 eV Core-core repulsion = 23736.777712 eV Total energy + Delta-G solvation = -4470.055485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.58097 -48.08457 -48.00918 -41.11464 -39.12100 -35.60675 -34.55171 -32.42448 -31.12566 -30.21127 -29.58048 -27.66385 -26.48524 -23.58679 -22.88819 -21.16784 -21.07139 -20.24264 -19.38423 -18.96074 -18.83632 -18.01537 -17.00686 -16.67313 -15.65466 -15.49088 -15.25028 -15.01386 -14.78756 -14.52269 -14.46236 -14.29818 -14.20641 -14.12909 -14.07046 -13.51822 -13.03843 -12.79978 -12.68961 -12.54103 -12.42506 -11.98667 -11.72108 -11.36383 -11.26084 -11.01092 -10.83342 -10.43472 -10.34272 -10.19574 -9.65339 -9.37624 -9.11022 -9.03756 -8.57404 -8.51395 -7.84143 -6.13839 -4.23529 1.80717 2.01612 2.39074 3.01260 3.13514 3.23806 3.29489 3.29928 3.32206 3.52578 3.80280 4.08574 4.34373 4.36564 4.62837 4.76428 5.03197 5.17438 5.19555 5.36159 5.52253 5.59565 5.81283 6.06568 6.37245 6.42808 6.63683 6.71118 6.92679 7.00675 7.17792 7.34353 7.42267 7.59277 7.69780 7.82141 7.88338 8.16323 8.61193 8.74789 9.07924 9.43712 10.91386 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003891 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.129116 B = 7194.267579 C = 7626.358759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.500 3.500 15 O -0.515 6.515 16 C -0.167 4.167 17 C 0.145 3.855 18 H 0.152 0.848 19 N -0.370 5.370 20 C 0.031 3.969 21 C -0.260 4.260 22 C 0.034 3.966 23 N -0.229 5.229 24 C 0.451 3.549 25 F -0.175 7.175 26 F -0.171 7.171 27 F -0.167 7.167 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.387 0.613 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.173 0.827 38 H 0.147 0.853 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 9.774 12.212 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.283 3.717 15 O -0.392 6.392 16 C -0.209 4.209 17 C 0.039 3.961 18 H 0.170 0.830 19 N -0.154 5.154 20 C -0.112 4.112 21 C -0.289 4.289 22 C -0.154 4.154 23 N -0.047 5.047 24 C 0.395 3.605 25 F -0.157 7.157 26 F -0.152 7.152 27 F -0.148 7.148 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.191 0.809 38 H 0.165 0.835 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.657 8.343 11.213 16.988 hybrid contribution 1.647 0.955 0.786 2.059 sum -8.010 9.298 12.000 17.164 Atomic orbital electron populations 1.21824 0.98292 0.97982 1.01177 1.21934 0.92634 0.99823 1.02232 1.18760 0.94105 0.89070 0.80809 0.93284 1.21180 0.90733 1.39176 1.06318 0.92273 1.24870 0.98549 0.94784 0.95362 1.69878 1.35218 1.37474 1.09292 0.86528 0.84918 0.78305 0.77469 1.20176 1.21099 1.20217 1.46434 1.14328 1.56122 1.18663 1.19703 0.83689 0.80186 0.88165 1.90814 1.50817 1.58284 1.39256 1.22258 0.95331 1.02098 1.01166 1.21881 1.01990 0.89208 0.82982 0.82998 1.48166 1.53378 1.07034 1.06802 1.22755 1.01803 0.85418 1.01239 1.21474 1.13961 1.01694 0.91765 1.24074 1.00034 0.90747 1.00551 1.77882 1.20394 1.20461 0.85981 1.20532 0.75923 0.76451 0.87584 1.93177 1.61585 1.73014 1.87916 1.93250 1.48918 1.77825 1.95217 1.93240 1.94181 1.56358 1.71012 0.95931 0.94464 0.93039 0.88322 0.95123 0.92489 0.78124 0.87722 0.86520 0.80949 0.83496 0.79910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.03 5.45 -26.74 -0.15 -3.17 16 3 C 0.27 6.71 2.24 -69.09 -0.15 6.56 16 4 H 0.05 1.42 7.58 -51.92 -0.39 1.03 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -13.86 5.02 -54.93 -0.28 -14.13 16 14 C 0.50 9.05 6.22 -10.98 -0.07 8.99 16 15 O -0.52 -11.08 11.22 5.56 0.06 -11.02 16 16 C -0.17 -2.11 5.08 -27.88 -0.14 -2.25 16 17 C 0.15 1.84 2.33 -67.93 -0.16 1.68 16 18 H 0.15 2.01 7.83 -51.93 -0.41 1.61 16 19 N -0.37 -5.42 3.06 -54.86 -0.17 -5.59 16 20 C 0.03 0.39 10.22 -17.22 -0.18 0.22 16 21 C -0.26 -3.27 10.80 -40.01 -0.43 -3.71 16 22 C 0.03 0.50 12.03 -17.36 -0.21 0.29 16 23 N -0.23 -3.98 10.92 30.63 0.33 -3.64 16 24 C 0.45 4.76 2.47 37.16 0.09 4.85 16 25 F -0.18 -1.73 14.38 2.25 0.03 -1.70 16 26 F -0.17 -1.97 16.91 2.25 0.04 -1.93 16 27 F -0.17 -1.67 16.93 2.25 0.04 -1.64 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.04 0.76 5.65 -51.93 -0.29 0.47 16 30 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 31 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.39 6.56 8.54 -40.82 -0.35 6.21 16 35 H 0.10 1.18 7.86 -51.93 -0.41 0.78 16 36 H 0.12 1.15 7.82 -51.93 -0.41 0.74 16 37 H 0.17 1.74 6.26 -52.49 -0.33 1.41 16 38 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.18 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -31.00 333.74 -5.31 -36.31 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.53 Total: 8.44 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.47 Total: -1.68 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.52 Total: -47.25 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.06 Total: -11.02 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.00 -5.31 -36.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.630 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds