Wall clock time and date at job start Tue Mar 31 2020 12:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47218 * 2 1 4 4 H 1.09009 * 109.46615 * 304.99916 * 3 2 1 5 5 C 1.50697 * 109.47009 * 185.00300 * 3 2 1 6 6 H 1.08005 * 119.99698 * 239.99051 * 5 3 2 7 7 C 1.37877 * 120.00457 * 59.99709 * 5 3 2 8 8 N 1.31509 * 119.99724 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00112 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47246 * 59.99861 * 9 7 5 11 11 H 1.48496 * 109.46840 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47020 * 299.99567 * 9 7 5 13 13 N 1.46501 * 109.47191 * 64.99791 * 3 2 1 14 14 C 1.34779 * 120.00120 * 274.99693 * 13 3 2 15 15 O 1.21278 * 119.99858 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99930 * 179.97438 * 14 13 3 17 17 C 1.52995 * 109.46746 * 173.99610 * 16 14 13 18 18 H 1.08994 * 109.47380 * 54.00533 * 17 16 14 19 19 N 1.46502 * 109.47372 * 293.99930 * 17 16 14 20 20 C 1.34947 * 126.03726 * 274.71629 * 19 17 16 21 21 C 1.35314 * 107.74614 * 179.83865 * 20 19 17 22 22 C 1.39867 * 107.91698 * 0.42640 * 21 20 19 23 23 N 1.30843 * 108.20580 * 359.73650 * 22 21 20 24 24 C 1.53004 * 109.46691 * 174.00124 * 17 16 14 25 25 F 1.39898 * 109.47432 * 54.28325 * 24 17 16 26 26 F 1.39905 * 109.47151 * 174.28219 * 24 17 16 27 27 F 1.39905 * 109.47226 * 294.27921 * 24 17 16 28 28 H 1.09002 * 109.47493 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47384 * 299.99815 * 1 2 3 30 30 H 1.09000 * 109.47547 * 59.99986 * 1 2 3 31 31 H 1.08993 * 109.46942 * 239.99595 * 2 1 3 32 32 H 1.08998 * 109.46809 * 119.99986 * 2 1 3 33 33 H 0.96998 * 120.00450 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99471 * 95.00712 * 13 3 2 35 35 H 1.09003 * 109.46649 * 54.00115 * 16 14 13 36 36 H 1.09001 * 109.47035 * 294.00020 * 16 14 13 37 37 H 1.08002 * 126.12178 * 0.02562 * 20 19 17 38 38 H 1.07992 * 126.04056 * 180.16076 * 21 20 19 39 39 H 1.08001 * 125.90051 * 179.71483 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9814 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8798 -1.3812 10 1 6.5966 0.1451 -0.2343 11 1 6.3977 0.2165 -2.6504 12 1 6.5004 2.2797 -1.3809 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3396 2.6320 0.4343 16 6 0.0362 3.3377 2.6548 17 6 -1.3196 4.0229 2.4733 18 1 -2.0455 3.2996 2.1021 19 7 -1.1876 5.1200 1.5114 20 6 -0.7921 6.3792 1.7926 21 6 -0.7989 7.0816 0.6361 22 6 -1.2221 6.2249 -0.3852 23 7 -1.4554 5.0487 0.1383 24 6 -1.7945 4.5779 3.8177 25 9 -0.8042 5.4063 4.3564 26 9 -2.9681 5.3159 3.6293 27 9 -2.0457 3.5189 4.6969 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8291 -0.0605 -2.9503 34 1 2.2720 2.1232 1.9977 35 1 0.7863 4.0817 2.9232 36 1 -0.0363 2.5926 3.4470 37 1 -0.5163 6.7575 2.7659 38 1 -0.5297 8.1213 0.5226 39 1 -1.3369 6.4887 -1.4262 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:44 Heat of formation + Delta-G solvation = -125.827446 kcal Electronic energy + Delta-G solvation = -28207.695377 eV Core-core repulsion = 23736.777712 eV Total energy + Delta-G solvation = -4470.917664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.41945 -48.89004 -48.86740 -42.16900 -40.62225 -37.17257 -35.88439 -34.27957 -32.87957 -31.34996 -30.67374 -29.17713 -27.91403 -25.07234 -24.30950 -22.42327 -22.14828 -21.63510 -21.02710 -19.92380 -19.75513 -18.96494 -18.65822 -17.80768 -17.14829 -16.92982 -16.74140 -16.14465 -15.90549 -15.67613 -15.55596 -15.42255 -15.20194 -14.99453 -14.98169 -14.81608 -14.58924 -14.34379 -14.02653 -13.60756 -13.50705 -13.45151 -13.19205 -13.05214 -12.89932 -12.75797 -12.63513 -12.18167 -12.02837 -11.57072 -11.49330 -11.05108 -10.64332 -10.49468 -10.46766 -9.61420 -9.54502 -8.15596 -6.32961 0.82859 1.03123 1.42671 1.44788 1.45730 1.53442 1.89973 1.97639 2.19461 2.39310 2.59224 2.84265 2.95460 3.13982 3.34425 3.63373 3.82505 4.02798 4.11832 4.30671 4.41226 4.51255 4.59296 4.63227 4.78704 4.84524 5.08012 5.11046 5.28270 5.45815 5.57532 5.64815 5.67597 5.81898 5.94938 5.99066 6.19154 6.75696 6.76325 7.01377 7.34869 7.63545 8.89300 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.003891 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.129116 B = 7194.267579 C = 7626.358759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.285 3.715 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.707 5.707 14 C 0.494 3.506 15 O -0.551 6.551 16 C -0.153 4.153 17 C 0.140 3.860 18 H 0.141 0.859 19 N -0.377 5.377 20 C 0.032 3.968 21 C -0.264 4.264 22 C 0.022 3.978 23 N -0.289 5.289 24 C 0.468 3.532 25 F -0.166 7.166 26 F -0.176 7.176 27 F -0.159 7.159 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.125 0.875 36 H 0.153 0.847 37 H 0.202 0.798 38 H 0.175 0.825 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.841 10.708 14.839 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.181 3.819 4 H 0.011 0.989 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.357 5.357 14 C 0.279 3.721 15 O -0.429 6.429 16 C -0.194 4.194 17 C 0.034 3.966 18 H 0.158 0.842 19 N -0.161 5.161 20 C -0.111 4.111 21 C -0.293 4.293 22 C -0.165 4.165 23 N -0.108 5.108 24 C 0.412 3.588 25 F -0.147 7.147 26 F -0.157 7.157 27 F -0.141 7.141 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.144 0.856 36 H 0.171 0.829 37 H 0.218 0.782 38 H 0.193 0.807 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.773 9.294 13.888 18.874 hybrid contribution 1.318 0.711 -0.045 1.499 sum -7.455 10.006 13.843 18.636 Atomic orbital electron populations 1.21646 0.96815 0.98961 1.00301 1.21770 0.93843 0.99188 1.01131 1.18245 0.93288 0.89000 0.81317 0.98916 1.21560 0.91647 1.38833 1.06615 0.91205 1.25743 1.03127 0.94443 0.95069 1.70045 1.37073 1.38388 1.09823 0.85473 0.79371 0.78374 0.77567 1.18828 1.21302 1.19805 1.46176 1.15560 1.56473 1.17525 1.20553 0.82490 0.79311 0.89704 1.90817 1.51689 1.59187 1.41228 1.22198 0.95714 1.02986 0.98461 1.21938 1.01799 0.89050 0.83814 0.84150 1.48287 1.53589 1.08037 1.06216 1.23287 1.00735 0.84648 1.02459 1.21863 1.13453 1.02844 0.91101 1.24526 0.99501 0.90622 1.01867 1.77807 1.22786 1.22283 0.87890 1.20016 0.75761 0.76464 0.86522 1.93196 1.61178 1.72734 1.87638 1.93248 1.49264 1.77930 1.95243 1.93262 1.94136 1.56110 1.70562 0.93885 0.93280 0.95904 0.91423 0.93990 0.92695 0.76320 0.85642 0.82917 0.78152 0.80728 0.78462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.82 5.45 30.59 0.17 -5.65 16 3 C 0.29 14.29 2.24 44.24 0.10 14.39 16 4 H -0.01 -0.43 7.58 -2.38 -0.02 -0.45 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.39 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.92 -52.42 11.29 21.45 0.24 -52.18 16 9 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 10 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.71 -27.32 5.02 -446.10 -2.24 -29.56 16 14 C 0.49 17.59 6.22 87.66 0.55 18.14 16 15 O -0.55 -24.27 11.22 -3.02 -0.03 -24.31 16 16 C -0.15 -3.46 5.08 29.85 0.15 -3.31 16 17 C 0.14 3.30 2.33 44.99 0.10 3.41 16 18 H 0.14 3.66 7.83 -2.39 -0.02 3.64 16 19 N -0.38 -10.69 3.06 -327.49 -1.00 -11.69 16 20 C 0.03 0.74 10.22 83.54 0.85 1.59 16 21 C -0.26 -6.24 10.80 21.99 0.24 -6.00 16 22 C 0.02 0.65 12.03 85.23 1.02 1.67 16 23 N -0.29 -10.22 10.92 -57.02 -0.62 -10.84 16 24 C 0.47 8.62 2.47 71.98 0.18 8.79 16 25 F -0.17 -2.66 14.38 44.97 0.65 -2.02 16 26 F -0.18 -3.69 16.91 44.97 0.76 -2.93 16 27 F -0.16 -2.71 16.93 44.97 0.76 -1.95 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 2.01 5.65 -2.38 -0.01 1.99 16 30 H 0.02 1.09 7.85 -2.39 -0.02 1.08 16 31 H 0.07 3.72 5.95 -2.39 -0.01 3.71 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.40 12.92 8.54 -92.71 -0.79 12.13 16 35 H 0.13 2.38 7.86 -2.39 -0.02 2.36 16 36 H 0.15 2.38 7.82 -2.39 -0.02 2.37 16 37 H 0.20 3.34 6.26 -2.91 -0.02 3.33 16 38 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.20 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -70.10 333.74 5.49 -64.60 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.31 Total: 25.70 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 4.65 Total: 1.29 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.62 Total: -104.26 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.03 Total: -24.31 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 2.17 Total: -6.89 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -70.10 5.49 -64.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.226 kcal (2) G-P(sol) polarization free energy of solvation -70.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds