Wall clock time and date at job start Tue Mar 31 2020 14:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 O 1.21277 * 119.99833 * 119.99582 * 4 2 1 6 6 N 1.34773 * 120.00068 * 299.99925 * 4 2 1 7 7 C 1.46500 * 119.99996 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47317 * 179.97438 * 7 6 4 9 9 C 1.52989 * 109.47566 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47512 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00352 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00332 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99708 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00071 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47233 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47046 * 120.00352 * 14 12 10 17 17 H 1.48500 * 109.46790 * 240.00027 * 14 12 10 18 18 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 19 19 C 1.34944 * 126.04011 * 325.00390 * 18 2 1 20 20 C 1.35320 * 107.74894 * 179.97438 * 19 18 2 21 21 C 1.39871 * 107.91941 * 0.02562 * 20 19 18 22 22 C 1.50695 * 125.90193 * 180.02562 * 21 20 19 23 23 F 1.39898 * 109.47390 * 89.99826 * 22 21 20 24 24 F 1.39898 * 109.47512 * 210.00126 * 22 21 20 25 25 F 1.39903 * 109.47046 * 329.99896 * 22 21 20 26 26 N 1.30838 * 108.20158 * 359.74077 * 21 20 19 27 27 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99906 * 359.97438 * 6 4 2 31 31 H 1.09002 * 109.47092 * 299.99922 * 7 6 4 32 32 H 1.09004 * 109.47042 * 59.99923 * 7 6 4 33 33 H 1.09002 * 109.46838 * 300.00552 * 8 7 6 34 34 H 1.09001 * 109.47248 * 59.99589 * 8 7 6 35 35 H 1.09002 * 109.47371 * 300.00077 * 9 8 7 36 36 H 1.09001 * 109.47294 * 59.99468 * 9 8 7 37 37 H 0.97001 * 119.99949 * 180.02562 * 13 12 10 38 38 H 1.08000 * 126.12657 * 359.95303 * 19 18 2 39 39 H 1.07999 * 126.03938 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1946 -0.9409 3.6507 8 6 1.6853 -0.2192 4.9000 9 6 2.1953 -0.9403 6.1492 10 6 1.6941 -0.2291 7.3796 11 1 1.0735 0.6492 7.2806 12 6 2.0270 -0.7003 8.6320 13 7 2.7815 -1.7707 8.7526 14 14 1.4052 0.1809 10.1571 15 1 0.5815 1.3486 9.7530 16 1 0.5796 -0.7519 10.9657 17 1 2.5607 0.6468 10.9652 18 7 2.0183 -0.6907 -1.1961 19 6 1.4401 -1.7559 -1.7894 20 6 2.1960 -2.0924 -2.8602 21 6 3.2734 -1.2026 -2.9231 22 6 4.3664 -1.2102 -3.9605 23 9 3.9912 -0.4023 -5.0392 24 9 5.5478 -0.7166 -3.3969 25 9 4.5749 -2.5191 -4.4086 26 7 3.1650 -0.3587 -1.9291 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.1494 0.5389 2.5435 31 1 1.8308 -1.9684 3.6505 32 1 3.2847 -0.9413 3.6508 33 1 2.0494 0.8082 4.8998 34 1 0.5953 -0.2183 4.9001 35 1 1.8315 -1.9679 6.1495 36 1 3.2853 -0.9409 6.1489 37 1 3.0154 -2.1024 9.6336 38 1 0.5362 -2.2514 -1.4672 39 1 2.0018 -2.9045 -3.5452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:26 Heat of formation + Delta-G solvation = -119.334753 kcal Electronic energy + Delta-G solvation = -25865.966911 eV Core-core repulsion = 21395.330791 eV Total energy + Delta-G solvation = -4470.636120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.37622 -47.91626 -47.85877 -41.91622 -39.77619 -35.71687 -35.15143 -33.45329 -31.61193 -30.83432 -30.39809 -27.02681 -26.84015 -24.92420 -23.20764 -21.73362 -21.37897 -20.85852 -20.00500 -18.76941 -18.47166 -18.29732 -17.50146 -17.29772 -16.43303 -15.78488 -15.39788 -14.98527 -14.74516 -14.66222 -14.55516 -14.44755 -14.29889 -14.13486 -14.02153 -14.01159 -13.79740 -13.71539 -13.21226 -12.93371 -12.47862 -12.37950 -12.22477 -11.94411 -11.81255 -11.34828 -10.98653 -10.86258 -10.65352 -10.46140 -9.98906 -9.94618 -9.53118 -9.21243 -9.07565 -9.05064 -8.44509 -6.08678 -4.12263 1.18658 1.53864 2.03370 2.35218 2.47963 3.05863 3.25128 3.32987 3.35881 3.38403 3.68317 4.05945 4.13853 4.24005 4.37197 4.39531 4.42029 4.85635 4.90482 5.04449 5.17724 5.27336 5.35172 5.41201 5.53365 5.61846 5.83928 6.00599 6.21644 6.39370 6.45295 6.65355 6.87238 6.97458 7.36546 7.55074 7.66129 7.89214 8.01600 8.29782 8.94537 9.52470 11.02598 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.029707 B = 0.002013 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.317596 B =13908.635180 C =14326.618425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.134 0.866 4 C 0.495 3.505 5 O -0.523 6.523 6 N -0.716 5.716 7 C 0.116 3.884 8 C -0.120 4.120 9 C 0.023 3.977 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 N -0.332 5.332 19 C 0.080 3.920 20 C -0.232 4.232 21 C -0.020 4.020 22 C 0.558 3.442 23 F -0.170 7.170 24 F -0.167 7.167 25 F -0.166 7.166 26 N -0.230 5.230 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.400 0.600 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.185 0.815 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 3.019 -26.254 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.151 0.849 4 C 0.277 3.723 5 O -0.398 6.398 6 N -0.368 5.368 7 C -0.006 4.006 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 N -0.114 5.114 19 C -0.065 4.065 20 C -0.261 4.261 21 C -0.187 4.187 22 C 0.502 3.498 23 F -0.152 7.152 24 F -0.148 7.148 25 F -0.147 7.147 26 N -0.053 5.053 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.202 0.798 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.458 3.245 -25.502 26.092 hybrid contribution -0.682 0.057 0.574 0.893 sum -5.140 3.302 -24.928 25.666 Atomic orbital electron populations 1.22196 0.89841 1.04762 1.05191 1.21364 0.96571 0.98047 0.80917 0.84855 1.20505 0.81529 0.85443 0.84773 1.90795 1.36870 1.25774 1.86357 1.46148 1.53082 1.31962 1.05614 1.21743 0.99537 0.96572 0.82742 1.21899 1.00236 0.99589 0.94105 1.19033 0.96743 0.95693 0.89964 1.21213 1.31771 1.12331 0.90854 0.92563 1.25041 0.95130 0.95051 0.99278 1.69970 1.36746 1.22876 1.23579 0.86517 0.78658 0.79643 0.83056 1.19751 1.20963 1.20958 1.48260 1.18276 1.23993 1.20909 1.22541 1.00041 0.90180 0.93743 1.21159 0.96549 1.04993 1.03425 1.21976 0.98612 1.00082 0.98033 1.16852 0.79841 0.73921 0.79215 1.93234 1.91298 1.73504 1.57146 1.93249 1.49156 1.87614 1.84809 1.93224 1.95128 1.36515 1.89820 1.77333 1.01713 1.21529 1.04753 0.88603 0.89900 0.90522 0.76547 0.91475 0.91509 0.92582 0.92588 0.96256 0.96245 0.92903 0.79799 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 8.73 37.16 0.32 -0.46 16 2 C 0.14 1.21 3.73 -69.08 -0.26 0.95 16 3 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.50 6.35 7.22 -10.99 -0.08 6.27 16 5 O -0.52 -9.31 16.42 5.56 0.09 -9.22 16 6 N -0.72 -8.55 5.45 -60.29 -0.33 -8.88 16 7 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 8 C -0.12 -2.16 5.27 -26.74 -0.14 -2.31 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 11 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 13 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 14 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 N -0.33 -3.69 3.02 -55.99 -0.17 -3.86 16 19 C 0.08 0.74 10.57 -17.22 -0.18 0.56 16 20 C -0.23 -2.28 10.43 -40.01 -0.42 -2.70 16 21 C -0.02 -0.24 6.56 -82.41 -0.54 -0.78 16 22 C 0.56 6.24 3.55 36.00 0.13 6.37 16 23 F -0.17 -1.81 17.30 2.25 0.04 -1.77 16 24 F -0.17 -2.10 17.25 2.25 0.04 -2.06 16 25 F -0.17 -1.74 17.04 2.25 0.04 -1.70 16 26 N -0.23 -3.09 12.51 33.67 0.42 -2.67 16 27 H 0.10 0.32 7.56 -51.93 -0.39 -0.08 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.37 7.15 -51.93 -0.37 -0.01 16 30 H 0.40 3.40 7.89 -40.82 -0.32 3.08 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.19 1.05 7.26 -52.49 -0.38 0.67 16 39 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -34.65 353.52 -5.38 -40.03 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.81 Total: -2.77 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.74 Total: -2.83 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.66 Total: -41.00 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.12 Total: -5.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.65 -5.38 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.306 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds